Wall clock time and date at job start Tue Mar 31 2020 20:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99443 * 2 1 4 4 C 1.46896 * 111.00070 * 123.95065 * 2 1 3 5 5 C 1.52997 * 109.47478 * 170.00660 * 4 2 1 6 6 C 1.52999 * 109.47497 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47012 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00052 * 270.00134 * 7 6 5 9 9 C 1.50707 * 109.46850 * 270.00146 * 8 7 6 10 10 H 1.07998 * 119.99806 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99627 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99580 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00011 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46824 * 90.00401 * 13 11 9 15 15 H 1.48501 * 109.46947 * 210.00202 * 13 11 9 16 16 H 1.48491 * 109.47386 * 330.00271 * 13 11 9 17 17 C 1.34773 * 119.99691 * 90.00164 * 7 6 5 18 18 O 1.21588 * 120.00221 * 359.97438 * 17 7 6 19 19 N 1.34777 * 120.00251 * 179.97438 * 17 7 6 20 20 C 1.39252 * 120.00528 * 180.02562 * 19 17 7 21 21 N 1.31544 * 120.44471 * 359.97438 * 20 19 17 22 22 C 1.33189 * 120.75716 * 180.02562 * 21 20 19 23 23 C 1.35071 * 121.72085 * 359.74086 * 22 21 20 24 24 N 1.36249 * 120.86005 * 0.52396 * 23 22 21 25 25 C 1.46499 * 120.43803 * 179.76081 * 24 23 22 26 26 C 1.35178 * 119.12299 * 359.49214 * 24 23 22 27 27 O 1.21946 * 120.78251 * 180.23415 * 26 24 23 28 28 H 1.09000 * 109.47600 * 296.04517 * 1 2 3 29 29 H 1.09001 * 109.47326 * 56.05536 * 1 2 3 30 30 H 1.09009 * 109.46640 * 176.04475 * 1 2 3 31 31 H 1.09007 * 109.46789 * 183.95279 * 3 2 1 32 32 H 1.08999 * 109.47475 * 303.94664 * 3 2 1 33 33 H 1.08998 * 109.47234 * 63.95410 * 3 2 1 34 34 H 1.08998 * 109.47510 * 50.00391 * 4 2 1 35 35 H 1.09003 * 109.47459 * 290.00438 * 4 2 1 36 36 H 1.09004 * 109.47312 * 59.99685 * 5 4 2 37 37 H 1.09003 * 109.46594 * 300.00307 * 5 4 2 38 38 H 1.08998 * 109.46744 * 59.99859 * 6 5 4 39 39 H 1.08995 * 109.46890 * 299.99957 * 6 5 4 40 40 H 1.08996 * 109.47270 * 29.99992 * 8 7 6 41 41 H 1.08997 * 109.46980 * 150.00306 * 8 7 6 42 42 H 0.97005 * 119.99728 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99542 * 0.02562 * 19 17 7 44 44 H 1.08008 * 119.13762 * 179.97438 * 22 21 20 45 45 H 1.08004 * 119.57319 * 180.28393 * 23 22 21 46 46 H 1.09002 * 109.47391 * 269.72251 * 25 24 23 47 47 H 1.09001 * 109.46813 * 149.72307 * 25 24 23 48 48 H 1.09004 * 109.47041 * 29.72434 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 6 4.0529 -1.7523 2.1557 7 7 5.4977 -1.9340 1.9953 8 6 6.0141 -3.1057 1.2834 9 6 6.2359 -4.2304 2.2617 10 1 6.0140 -4.0868 3.3089 11 6 6.7221 -5.4425 1.8199 12 7 6.9161 -6.4238 2.6737 13 14 7.1052 -5.6909 0.0085 14 1 8.5161 -5.3102 -0.2557 15 1 6.9022 -7.1178 -0.3492 16 1 6.2021 -4.8423 -0.8094 17 6 6.3518 -1.0232 2.5026 18 8 5.9232 -0.0506 3.0930 19 7 7.6810 -1.1905 2.3556 20 6 8.5636 -0.2498 2.8802 21 7 8.1095 0.8057 3.5206 22 6 8.9479 1.7096 4.0244 23 6 10.2871 1.5802 3.9054 24 7 10.8310 0.5162 3.2507 25 6 12.2847 0.3876 3.1226 26 6 10.0116 -0.4221 2.7258 27 8 10.4659 -1.3889 2.1376 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5738 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9164 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5090 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0196 0.9324 37 1 3.7024 -1.4964 0.0453 38 1 3.5665 -2.7270 2.1941 39 1 3.8548 -1.2107 3.0806 40 1 5.2936 -3.4183 0.5277 41 1 6.9583 -2.8513 0.8020 42 1 7.2579 -7.2768 2.3628 43 1 8.0229 -1.9663 1.8842 44 1 8.5466 2.5666 4.5450 45 1 10.9353 2.3318 4.3313 46 1 12.6135 0.8782 2.2064 47 1 12.5543 -0.6679 3.0865 48 1 12.7678 0.8570 3.9796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350638265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:13 Heat of formation + Delta-G solvation = 14.665943 kcal Electronic energy + Delta-G solvation = -29912.747162 eV Core-core repulsion = 25811.910664 eV Total energy + Delta-G solvation = -4100.836498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.43631 -39.65865 -37.68307 -37.39966 -36.19018 -35.04064 -33.75701 -32.69294 -31.49061 -29.42796 -28.21420 -28.02111 -27.59258 -26.05015 -24.10961 -23.29722 -22.63461 -22.27506 -20.66627 -19.70728 -18.70917 -17.45260 -17.02543 -16.90843 -16.76951 -16.29812 -15.74229 -15.44935 -15.24339 -15.02346 -14.54231 -14.37185 -14.27797 -14.20532 -13.81830 -13.49289 -13.38211 -13.10866 -12.69244 -12.62146 -12.46176 -12.40674 -12.21758 -12.00517 -11.77741 -11.52767 -11.46966 -11.26826 -11.12323 -11.05825 -10.80602 -10.68500 -10.28176 -10.15893 -9.70997 -9.66418 -9.59537 -8.74889 -8.68334 -8.34970 -7.82192 -7.33108 -6.19423 -4.22311 0.83769 1.84773 2.19385 3.08709 3.22988 3.29542 3.31927 3.53859 3.92402 4.09065 4.15609 4.29528 4.30939 4.63487 4.81312 4.95597 5.02438 5.10245 5.11123 5.15106 5.28753 5.36453 5.37918 5.40283 5.55133 5.63700 5.69261 5.69646 5.78766 5.79464 5.89135 6.00202 6.17625 6.27665 6.36571 6.43814 6.57333 6.61433 6.66917 6.89503 7.02984 7.05996 7.12664 7.42598 7.49205 7.72938 8.05723 8.30568 8.56291 8.87186 9.18678 9.39826 10.93039 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.004288 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3731.004460 B = 6528.863955 C = 9542.472206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.549 5.549 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.132 4.132 6 C 0.141 3.859 7 N -0.601 5.601 8 C 0.208 3.792 9 C -0.546 4.546 10 H 0.080 0.920 11 C 0.079 3.921 12 N -0.888 5.888 13 Si 0.867 3.133 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.262 1.262 17 C 0.703 3.297 18 O -0.552 6.552 19 N -0.635 5.635 20 C 0.335 3.665 21 N -0.426 5.426 22 C 0.007 3.993 23 C 0.013 3.987 24 N -0.487 5.487 25 C 0.067 3.933 26 C 0.484 3.516 27 O -0.521 6.521 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.036 0.964 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.020 0.980 42 H 0.267 0.733 43 H 0.429 0.571 44 H 0.169 0.831 45 H 0.162 0.838 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.621 16.957 -1.505 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.171 4.171 6 C 0.017 3.983 7 N -0.336 5.336 8 C 0.086 3.914 9 C -0.584 4.584 10 H 0.098 0.902 11 C -0.125 4.125 12 N -0.525 5.525 13 Si 0.694 3.306 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.187 1.187 17 C 0.404 3.596 18 O -0.425 6.425 19 N -0.287 5.287 20 C 0.071 3.929 21 N -0.151 5.151 22 C -0.133 4.133 23 C -0.114 4.114 24 N -0.204 5.204 25 C -0.074 4.074 26 C 0.274 3.726 27 O -0.397 6.397 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.271 0.729 44 H 0.186 0.814 45 H 0.179 0.821 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.984 16.791 -1.728 16.908 hybrid contribution 1.158 -0.437 -0.405 1.302 sum 2.142 16.354 -2.133 16.631 Atomic orbital electron populations 1.22368 0.87656 1.02167 1.00148 1.61976 1.07504 1.13993 1.43778 1.22424 1.01467 0.88692 1.00018 1.22073 0.95889 0.98085 0.90925 1.22000 0.93846 1.01329 0.99916 1.21133 0.79028 1.00417 0.97716 1.47080 1.05155 1.23419 1.57900 1.19789 0.94403 0.83937 0.93258 1.21394 1.45286 0.95511 0.96214 0.90221 1.24876 0.94494 0.95664 0.97495 1.69891 1.44355 1.03753 1.34484 0.86974 0.79735 0.78182 0.85744 1.19615 1.20794 1.18695 1.15758 0.80050 0.83476 0.80281 1.90946 1.75936 1.30226 1.45430 1.42659 1.04851 1.24916 1.56235 1.20914 0.85848 0.90486 0.95610 1.68010 1.37220 1.00907 1.08916 1.21754 0.87627 1.00187 1.03771 1.22548 0.96733 0.92158 0.99944 1.45138 1.08926 1.20128 1.46192 1.22138 0.76667 1.05411 1.03214 1.19010 0.87384 0.83763 0.82450 1.90995 1.77068 1.29139 1.42501 0.95841 0.91680 0.91351 0.90869 0.91852 0.95687 0.90541 0.94616 0.91669 0.91075 0.89938 0.90616 0.94034 0.96247 0.92339 0.72914 0.81411 0.82057 0.90605 0.88805 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -7.00 5.02 -251.26 -1.26 -8.26 16 3 C 0.02 0.26 9.32 60.06 0.56 0.82 16 4 C 0.06 0.78 4.96 -3.83 -0.02 0.76 16 5 C -0.13 -2.05 5.46 -26.73 -0.15 -2.20 16 6 C 0.14 2.54 5.41 -4.04 -0.02 2.51 16 7 N -0.60 -12.57 2.46 -180.80 -0.44 -13.01 16 8 C 0.21 4.66 3.99 -5.19 -0.02 4.64 16 9 C -0.55 -14.58 9.94 -34.44 -0.34 -14.92 16 10 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 11 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 12 N -0.89 -26.20 13.96 55.43 0.77 -25.42 16 13 Si 0.87 20.23 27.47 -169.99 -4.67 15.56 16 14 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.26 -5.77 6.54 56.52 0.37 -5.40 16 17 C 0.70 15.35 8.24 -86.92 -0.72 14.63 16 18 O -0.55 -12.72 14.23 5.29 0.08 -12.64 16 19 N -0.64 -13.27 5.26 -13.99 -0.07 -13.34 16 20 C 0.34 6.39 7.68 -152.44 -1.17 5.22 16 21 N -0.43 -7.72 8.03 -10.97 -0.09 -7.81 16 22 C 0.01 0.08 11.03 -18.09 -0.20 -0.12 16 23 C 0.01 0.13 10.32 -16.72 -0.17 -0.05 16 24 N -0.49 -6.01 3.02 -124.88 -0.38 -6.39 16 25 C 0.07 0.56 10.46 59.85 0.63 1.18 16 26 C 0.48 8.31 7.65 -12.69 -0.10 8.21 16 27 O -0.52 -10.30 16.33 4.97 0.08 -10.22 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.07 0.66 8.12 -51.92 -0.42 0.24 16 31 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 32 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.06 1.09 6.55 -51.93 -0.34 0.75 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 39 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 40 H 0.04 0.91 7.13 -51.93 -0.37 0.54 16 41 H 0.02 0.43 5.79 -51.93 -0.30 0.13 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.43 9.15 6.02 -40.82 -0.25 8.90 16 44 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 45 H 0.16 0.83 8.06 -52.48 -0.42 0.41 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.09 0.92 7.49 -51.93 -0.39 0.53 16 48 H 0.09 0.42 8.05 -51.93 -0.42 0.01 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -34.94 394.61 -8.71 -43.66 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.44 Total: 8.34 kcal Atomic # 6 Polarization: 24.84 SS G_CDS: -1.24 Total: 23.60 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.47 Total: -74.24 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: 0.16 Total: -22.86 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.67 Total: 15.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.94 -8.71 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350638265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.323 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds