Wall clock time and date at job start Tue Mar 31 2020 20:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 110.99443 * 2 1 4 4 C 1.46896 * 111.00070 * 123.95065 * 2 1 3 5 5 C 1.52997 * 109.47478 * 170.00660 * 4 2 1 6 6 C 1.52999 * 109.47497 * 179.97438 * 5 4 2 7 7 N 1.46504 * 109.47012 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00052 * 270.00134 * 7 6 5 9 9 C 1.50707 * 109.46850 * 270.00146 * 8 7 6 10 10 H 1.07998 * 119.99806 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99627 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99580 * 179.97438 * 11 9 8 13 13 Si 1.86801 * 120.00011 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46824 * 90.00401 * 13 11 9 15 15 H 1.48501 * 109.46947 * 210.00202 * 13 11 9 16 16 H 1.48491 * 109.47386 * 330.00271 * 13 11 9 17 17 C 1.34773 * 119.99691 * 90.00164 * 7 6 5 18 18 O 1.21588 * 120.00221 * 359.97438 * 17 7 6 19 19 N 1.34777 * 120.00251 * 179.97438 * 17 7 6 20 20 C 1.39252 * 120.00528 * 180.02562 * 19 17 7 21 21 N 1.31544 * 120.44471 * 359.97438 * 20 19 17 22 22 C 1.33189 * 120.75716 * 180.02562 * 21 20 19 23 23 C 1.35071 * 121.72085 * 359.74086 * 22 21 20 24 24 N 1.36249 * 120.86005 * 0.52396 * 23 22 21 25 25 C 1.46499 * 120.43803 * 179.76081 * 24 23 22 26 26 C 1.35178 * 119.12299 * 359.49214 * 24 23 22 27 27 O 1.21946 * 120.78251 * 180.23415 * 26 24 23 28 28 H 1.09000 * 109.47600 * 296.04517 * 1 2 3 29 29 H 1.09001 * 109.47326 * 56.05536 * 1 2 3 30 30 H 1.09009 * 109.46640 * 176.04475 * 1 2 3 31 31 H 1.09007 * 109.46789 * 183.95279 * 3 2 1 32 32 H 1.08999 * 109.47475 * 303.94664 * 3 2 1 33 33 H 1.08998 * 109.47234 * 63.95410 * 3 2 1 34 34 H 1.08998 * 109.47510 * 50.00391 * 4 2 1 35 35 H 1.09003 * 109.47459 * 290.00438 * 4 2 1 36 36 H 1.09004 * 109.47312 * 59.99685 * 5 4 2 37 37 H 1.09003 * 109.46594 * 300.00307 * 5 4 2 38 38 H 1.08998 * 109.46744 * 59.99859 * 6 5 4 39 39 H 1.08995 * 109.46890 * 299.99957 * 6 5 4 40 40 H 1.08996 * 109.47270 * 29.99992 * 8 7 6 41 41 H 1.08997 * 109.46980 * 150.00306 * 8 7 6 42 42 H 0.97005 * 119.99728 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99542 * 0.02562 * 19 17 7 44 44 H 1.08008 * 119.13762 * 179.97438 * 22 21 20 45 45 H 1.08004 * 119.57319 * 180.28393 * 23 22 21 46 46 H 1.09002 * 109.47391 * 269.72251 * 25 24 23 47 47 H 1.09001 * 109.46813 * 149.72307 * 25 24 23 48 48 H 1.09004 * 109.47041 * 29.72434 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9552 0.9705 6 6 4.0529 -1.7523 2.1557 7 7 5.4977 -1.9340 1.9953 8 6 6.0141 -3.1057 1.2834 9 6 6.2359 -4.2304 2.2617 10 1 6.0140 -4.0868 3.3089 11 6 6.7221 -5.4425 1.8199 12 7 6.9161 -6.4238 2.6737 13 14 7.1052 -5.6909 0.0085 14 1 8.5161 -5.3102 -0.2557 15 1 6.9022 -7.1178 -0.3492 16 1 6.2021 -4.8423 -0.8094 17 6 6.3518 -1.0232 2.5026 18 8 5.9232 -0.0506 3.0930 19 7 7.6810 -1.1905 2.3556 20 6 8.5636 -0.2498 2.8802 21 7 8.1095 0.8057 3.5206 22 6 8.9479 1.7096 4.0244 23 6 10.2871 1.5802 3.9054 24 7 10.8310 0.5162 3.2507 25 6 12.2847 0.3876 3.1226 26 6 10.0116 -0.4221 2.7258 27 8 10.4659 -1.3889 2.1376 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5738 -0.8525 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9164 -0.8525 33 1 1.7042 1.8724 0.9233 34 1 1.5090 -1.7406 1.1757 35 1 1.7975 -0.2247 2.0628 36 1 3.9909 0.0196 0.9324 37 1 3.7024 -1.4964 0.0453 38 1 3.5665 -2.7270 2.1941 39 1 3.8548 -1.2107 3.0806 40 1 5.2936 -3.4183 0.5277 41 1 6.9583 -2.8513 0.8020 42 1 7.2579 -7.2768 2.3628 43 1 8.0229 -1.9663 1.8842 44 1 8.5466 2.5666 4.5450 45 1 10.9353 2.3318 4.3313 46 1 12.6135 0.8782 2.2064 47 1 12.5543 -0.6679 3.0865 48 1 12.7678 0.8570 3.9796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350638265.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:12 Heat of formation + Delta-G solvation = -11.045721 kcal Electronic energy + Delta-G solvation = -29913.862104 eV Core-core repulsion = 25811.910664 eV Total energy + Delta-G solvation = -4101.951440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.63601 -41.20193 -38.77349 -38.61978 -37.47230 -36.64826 -35.13207 -34.64992 -32.90040 -30.57234 -29.85639 -29.16034 -28.47774 -27.30557 -25.33211 -24.48206 -24.40388 -23.52782 -21.78562 -21.15794 -20.05481 -19.10289 -18.78991 -18.31764 -17.99023 -17.44694 -17.03250 -16.56562 -16.54138 -16.32899 -16.08980 -15.77099 -15.54997 -15.24964 -15.09446 -14.84430 -14.50328 -14.36584 -14.31754 -13.95982 -13.72498 -13.47446 -13.37490 -13.27823 -12.96173 -12.93710 -12.61966 -12.51064 -12.47678 -12.35707 -12.20235 -12.19345 -12.00546 -11.72137 -11.49177 -11.29354 -10.99722 -10.81680 -10.04808 -9.49233 -9.31110 -8.54793 -8.32689 -6.40740 -0.31030 0.63943 1.05354 1.38351 1.40053 1.48579 1.76760 2.10270 2.32106 2.67431 2.73739 3.01119 3.05953 3.10135 3.64110 3.89711 3.97205 4.12930 4.18363 4.23900 4.37942 4.41378 4.42797 4.43548 4.51011 4.60581 4.64601 4.67381 4.73555 4.75389 4.77540 4.81642 4.86878 5.00839 5.03119 5.11166 5.23668 5.29667 5.38123 5.40081 5.57484 5.66289 5.90330 6.06046 6.13501 6.17302 6.55427 6.62106 6.70186 7.07173 7.25726 7.57519 8.83650 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.007503 B = 0.004288 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3731.004460 B = 6528.863955 C = 9542.472206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.024 3.976 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.140 3.860 7 N -0.607 5.607 8 C 0.219 3.781 9 C -0.543 4.543 10 H 0.030 0.970 11 C 0.022 3.978 12 N -0.939 5.939 13 Si 0.936 3.064 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.235 1.235 17 C 0.699 3.301 18 O -0.574 6.574 19 N -0.647 5.647 20 C 0.272 3.728 21 N -0.439 5.439 22 C -0.034 4.034 23 C 0.072 3.928 24 N -0.474 5.474 25 C 0.057 3.943 26 C 0.473 3.527 27 O -0.565 6.565 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.029 0.971 42 H 0.269 0.731 43 H 0.421 0.579 44 H 0.201 0.799 45 H 0.234 0.766 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 19.902 -2.354 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.064 4.064 5 C -0.153 4.153 6 C 0.017 3.983 7 N -0.341 5.341 8 C 0.096 3.904 9 C -0.581 4.581 10 H 0.048 0.952 11 C -0.177 4.177 12 N -0.578 5.578 13 Si 0.759 3.241 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.158 1.158 17 C 0.401 3.599 18 O -0.450 6.450 19 N -0.299 5.299 20 C 0.012 3.988 21 N -0.163 5.163 22 C -0.174 4.174 23 C -0.056 4.056 24 N -0.188 5.188 25 C -0.082 4.082 26 C 0.265 3.735 27 O -0.446 6.446 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.078 0.922 43 H 0.261 0.739 44 H 0.218 0.782 45 H 0.250 0.750 46 H 0.114 0.886 47 H 0.093 0.907 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.304 19.792 -2.565 20.090 hybrid contribution 0.934 -1.071 0.110 1.425 sum 3.237 18.721 -2.455 19.157 Atomic orbital electron populations 1.22431 0.85924 1.02921 1.01034 1.61969 1.09141 1.14355 1.43208 1.22420 1.00621 0.88550 1.00873 1.21968 0.94165 0.98849 0.91394 1.21791 0.95381 0.99883 0.98283 1.21252 0.77783 1.00741 0.98573 1.47153 1.06209 1.22826 1.57921 1.19572 0.95265 0.83066 0.92449 1.21498 1.44704 0.97137 0.94800 0.95167 1.25769 0.94186 0.95130 1.02623 1.70047 1.46118 1.04538 1.37106 0.85879 0.79964 0.78538 0.79756 1.19406 1.20474 1.15780 1.15908 0.80567 0.83368 0.80107 1.90891 1.76488 1.31044 1.46569 1.42501 1.04644 1.25491 1.57218 1.20959 0.86600 0.91712 0.99518 1.67827 1.40229 1.00947 1.07260 1.22421 0.88867 1.00673 1.05462 1.23564 0.96793 0.90691 0.94529 1.45507 1.10505 1.19066 1.43711 1.22576 0.73803 1.05245 1.06589 1.18849 0.87131 0.84458 0.83057 1.90951 1.77468 1.31093 1.45058 0.95372 0.90236 0.90812 0.92381 0.90034 0.95606 0.89658 0.94673 0.92985 0.91481 0.89860 0.91469 0.92481 0.95350 0.92215 0.73904 0.78205 0.75008 0.88568 0.90734 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.57 127.69 1.22 1.68 16 2 N -0.56 -13.72 5.02 -948.84 -4.76 -18.48 16 3 C 0.02 0.53 9.32 127.69 1.19 1.72 16 4 C 0.06 1.71 4.96 86.30 0.43 2.13 16 5 C -0.11 -3.63 5.46 30.59 0.17 -3.46 16 6 C 0.14 5.24 5.41 86.38 0.47 5.71 16 7 N -0.61 -26.63 2.46 -844.20 -2.07 -28.70 16 8 C 0.22 10.09 3.99 85.64 0.34 10.44 16 9 C -0.54 -30.44 9.94 25.60 0.25 -30.19 16 10 H 0.03 1.95 8.06 -2.91 -0.02 1.92 16 11 C 0.02 1.26 5.47 84.66 0.46 1.73 16 12 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 13 Si 0.94 42.21 27.47 68.60 1.88 44.09 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.23 -9.48 6.54 99.48 0.65 -8.83 16 17 C 0.70 32.34 8.24 179.06 1.48 33.82 16 18 O -0.57 -27.83 14.23 -3.99 -0.06 -27.89 16 19 N -0.65 -28.84 5.26 -316.43 -1.67 -30.51 16 20 C 0.27 10.79 7.68 135.21 1.04 11.82 16 21 N -0.44 -16.05 8.03 -188.62 -1.51 -17.56 16 22 C -0.03 -0.77 11.03 83.76 0.92 0.15 16 23 C 0.07 1.08 10.32 83.28 0.86 1.94 16 24 N -0.47 -10.29 3.02 -666.90 -2.01 -12.30 16 25 C 0.06 0.72 10.46 127.77 1.34 2.05 16 26 C 0.47 16.42 7.65 86.37 0.66 17.08 16 27 O -0.57 -23.29 16.33 -5.14 -0.08 -23.37 16 28 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 30 H 0.07 1.29 8.12 -2.38 -0.02 1.27 16 31 H 0.06 1.48 6.47 -2.38 -0.02 1.46 16 32 H 0.08 1.52 8.12 -2.39 -0.02 1.50 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 2.09 8.06 -2.39 -0.02 2.07 16 35 H 0.04 0.93 8.12 -2.39 -0.02 0.91 16 36 H 0.05 1.79 6.55 -2.39 -0.02 1.77 16 37 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 3.05 8.07 -2.39 -0.02 3.03 16 39 H 0.07 2.60 7.42 -2.39 -0.02 2.59 16 40 H 0.06 2.47 7.13 -2.39 -0.02 2.45 16 41 H 0.03 1.29 5.79 -2.39 -0.01 1.27 16 42 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 43 H 0.42 19.33 6.02 -92.71 -0.56 18.77 16 44 H 0.20 3.10 8.06 -2.91 -0.02 3.08 16 45 H 0.23 0.31 8.06 -2.91 -0.02 0.29 16 46 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 1.32 7.49 -2.39 -0.02 1.31 16 48 H 0.14 0.42 8.05 -2.38 -0.02 0.40 16 Total: -1.00 -84.53 394.61 1.20 -83.33 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.36 Total: 32.26 kcal Atomic # 6 Polarization: 45.79 SS G_CDS: 10.83 Total: 56.62 kcal Atomic # 7 Polarization: -153.31 SS G_CDS: -11.73 Total: -165.04 kcal Atomic # 8 Polarization: -51.12 SS G_CDS: -0.14 Total: -51.26 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -84.53 1.20 -83.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350638265.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.280 kcal (2) G-P(sol) polarization free energy of solvation -84.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds