Wall clock time and date at job start Tue Mar 31 2020 21:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46907 * 110.99220 * 2 1 4 4 C 1.46899 * 111.00097 * 123.95042 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04931 * 4 2 1 6 6 N 1.46497 * 109.46983 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99566 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.35815 * 126.05152 * 124.99881 * 10 9 7 12 12 C 1.35761 * 107.56531 * 179.97438 * 11 10 9 13 13 N 1.40759 * 126.08157 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99754 * 179.97438 * 13 12 11 15 15 O 1.21304 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99655 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.46854 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46934 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99806 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99857 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47314 * 90.00083 * 22 20 18 24 24 H 1.48494 * 109.47402 * 210.00118 * 22 20 18 25 25 H 1.48502 * 109.47159 * 330.00029 * 22 20 18 26 26 C 1.40256 * 107.83472 * 0.02562 * 12 11 10 27 27 N 1.30835 * 108.33822 * 359.75231 * 26 12 11 28 28 H 1.09002 * 109.46773 * 296.04648 * 1 2 3 29 29 H 1.08998 * 109.47211 * 56.05194 * 1 2 3 30 30 H 1.08998 * 109.46611 * 176.05062 * 1 2 3 31 31 H 1.09010 * 109.46325 * 183.95642 * 3 2 1 32 32 H 1.08995 * 109.47065 * 303.94695 * 3 2 1 33 33 H 1.08991 * 109.47325 * 63.95675 * 3 2 1 34 34 H 1.09001 * 109.46901 * 306.04780 * 4 2 1 35 35 H 1.09002 * 109.47043 * 186.05001 * 4 2 1 36 36 H 1.09001 * 109.46832 * 59.99813 * 5 4 2 37 37 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 38 38 H 0.96995 * 120.00423 * 359.97438 * 6 5 4 39 39 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 40 40 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 41 41 H 1.07999 * 126.22073 * 359.94688 * 11 10 9 42 42 H 0.96996 * 119.99994 * 359.97438 * 13 12 11 43 43 H 1.09000 * 109.47480 * 300.00088 * 16 14 13 44 44 H 1.08996 * 109.47356 * 60.00338 * 16 14 13 45 45 H 1.08994 * 109.46679 * 299.99951 * 17 16 14 46 46 H 1.08996 * 109.46999 * 59.99952 * 17 16 14 47 47 H 0.97007 * 119.99749 * 179.97438 * 21 20 18 48 48 H 1.08005 * 125.83005 * 179.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6317 -2.2425 0.9705 6 7 2.1572 -3.0064 2.1047 7 6 1.9569 -4.3375 2.1713 8 8 1.3412 -4.9029 1.2926 9 6 2.4970 -5.1233 3.3384 10 7 2.1487 -6.5372 3.1782 11 6 3.0184 -7.5803 3.1842 12 6 2.2967 -8.7165 3.0074 13 7 2.8117 -10.0253 2.9510 14 6 1.9792 -11.0698 2.7706 15 8 0.7861 -10.8819 2.6571 16 6 2.5305 -12.4710 2.7097 17 6 1.3836 -13.4616 2.4990 18 6 1.9349 -14.8629 2.4388 19 1 2.9971 -15.0301 2.5401 20 6 1.0833 -15.9314 2.2542 21 7 -0.2101 -15.7277 2.1313 22 14 1.7667 -17.6682 2.1788 23 1 1.7972 -18.2480 3.5456 24 1 0.9023 -18.5028 1.3063 25 1 3.1440 -17.6346 1.6245 26 6 0.9469 -8.3541 2.8897 27 7 0.8592 -7.0531 2.9968 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3632 -1.0252 -0.0708 31 1 3.0828 1.3434 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5612 -0.3871 2.0628 35 1 3.0798 -0.6609 1.1757 36 1 2.0660 -2.6213 0.0452 37 1 0.5474 -2.3475 0.9324 38 1 2.6500 -2.5543 2.8073 39 1 3.5813 -5.0179 3.3767 40 1 2.0623 -4.7449 4.2636 41 1 4.0896 -7.5174 3.3068 42 1 3.7656 -10.1755 3.0421 43 1 3.2343 -12.5489 1.8809 44 1 3.0426 -12.7008 3.6440 45 1 0.6797 -13.3838 3.3275 46 1 0.8719 -13.2316 1.5645 47 1 -0.8093 -16.4794 2.0011 48 1 0.1206 -9.0334 2.7401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360283409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:42 Heat of formation + Delta-G solvation = 19.389809 kcal Electronic energy + Delta-G solvation = -27451.269307 eV Core-core repulsion = 23350.637651 eV Total energy + Delta-G solvation = -4100.631656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27936 -39.97731 -38.91289 -38.15782 -35.08510 -34.52114 -33.45671 -33.01857 -31.00722 -30.33516 -29.23961 -28.17725 -27.24986 -25.52048 -24.48577 -22.33526 -21.88652 -21.74586 -20.84714 -20.45360 -19.36602 -17.71853 -17.44747 -16.84287 -16.59513 -16.52732 -15.93133 -15.67559 -15.46157 -15.17398 -15.13068 -14.90289 -14.54919 -14.39143 -14.03647 -13.83981 -13.52584 -13.25723 -12.97553 -12.85935 -12.64427 -12.47777 -12.34120 -12.32184 -12.15289 -12.07050 -11.70880 -11.14230 -10.92040 -10.70977 -10.57996 -10.49837 -10.25813 -9.93926 -9.62853 -9.54259 -9.24806 -9.15334 -9.03289 -9.01167 -8.29577 -7.52454 -5.93218 -3.97670 1.75944 2.18641 2.22623 2.67878 2.83531 3.35762 3.41708 3.44131 3.46122 3.53966 3.57960 4.15244 4.28112 4.32611 4.44378 4.50282 4.59331 4.65990 4.74205 4.75594 4.83462 4.99388 5.01911 5.19549 5.27793 5.28543 5.40902 5.41886 5.48892 5.50839 5.69465 5.83892 5.87744 6.22210 6.24238 6.33561 6.34511 6.44907 6.81388 6.89522 7.02869 7.14914 7.72423 7.77208 7.80310 7.88875 7.92702 8.09840 8.40754 8.74444 9.10646 9.65819 11.17676 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001439 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.552578 B =19454.429117 C =19817.634176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.025 3.975 4 C 0.044 3.956 5 C 0.123 3.877 6 N -0.734 5.734 7 C 0.497 3.503 8 O -0.498 6.498 9 C 0.130 3.870 10 N -0.373 5.373 11 C -0.003 4.003 12 C 0.025 3.975 13 N -0.658 5.658 14 C 0.511 3.489 15 O -0.520 6.520 16 C -0.126 4.126 17 C 0.036 3.964 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.051 3.949 27 N -0.260 5.260 28 H 0.028 0.972 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.041 0.959 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.399 0.601 39 H 0.123 0.877 40 H 0.111 0.889 41 H 0.174 0.826 42 H 0.407 0.593 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.025 0.975 47 H 0.261 0.739 48 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.114 36.185 2.716 37.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.001 4.001 6 N -0.389 5.389 7 C 0.280 3.720 8 O -0.370 6.370 9 C 0.003 3.997 10 N -0.160 5.160 11 C -0.148 4.148 12 C -0.080 4.080 13 N -0.304 5.304 14 C 0.301 3.699 15 O -0.394 6.394 16 C -0.166 4.166 17 C -0.002 4.002 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.138 4.138 27 N -0.081 5.081 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.191 0.809 42 H 0.241 0.759 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.071 0.929 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.015 36.617 1.510 37.741 hybrid contribution 1.477 -0.965 1.077 2.067 sum 10.492 35.652 2.587 37.254 Atomic orbital electron populations 1.22527 0.86759 1.03022 1.00833 1.61852 1.08560 1.14172 1.42302 1.22402 1.00899 0.88205 1.00818 1.22268 1.00859 0.93052 0.92250 1.21282 0.99742 0.89617 0.89495 1.45802 1.59066 1.07707 1.26331 1.20714 0.80953 0.82218 0.88122 1.90851 1.38135 1.69112 1.38879 1.21252 1.02224 0.78137 0.98039 1.47546 1.05048 1.04117 1.59265 1.21706 0.96299 0.86401 1.10377 1.17878 0.93255 0.85329 1.11549 1.43276 1.10952 1.02988 1.73215 1.21720 0.86603 0.87155 0.74442 1.90555 1.16009 1.85356 1.47452 1.21869 1.02756 0.89273 1.02737 1.18924 0.91606 0.91072 0.98575 1.21208 0.93544 0.91482 1.50364 0.92590 1.25016 0.94831 0.99154 0.95332 1.70000 1.02400 1.31139 1.49185 0.86595 0.78852 0.84624 0.77890 1.20704 1.21242 1.19904 1.24672 0.97304 0.91916 0.99863 1.77473 0.98942 1.10372 1.21293 0.95344 0.90963 0.90679 0.91137 0.90951 0.95475 0.94032 0.89997 0.90407 0.91197 0.76689 0.85946 0.87086 0.80892 0.75874 0.89940 0.89943 0.95655 0.95631 0.92950 0.77563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.32 60.07 0.56 0.65 16 2 N -0.54 -3.08 5.02 -251.25 -1.26 -4.34 16 3 C 0.02 0.10 9.57 60.07 0.57 0.67 16 4 C 0.04 0.20 5.07 -3.83 -0.02 0.18 16 5 C 0.12 0.82 5.60 -4.04 -0.02 0.80 16 6 N -0.73 -4.16 5.56 -60.30 -0.33 -4.49 16 7 C 0.50 4.78 7.86 -10.98 -0.09 4.69 16 8 O -0.50 -7.81 15.72 5.56 0.09 -7.73 16 9 C 0.13 0.92 7.00 -5.19 -0.04 0.88 16 10 N -0.37 -4.67 3.42 -62.20 -0.21 -4.89 16 11 C 0.00 -0.03 11.52 -16.68 -0.19 -0.22 16 12 C 0.02 0.38 6.90 -83.88 -0.58 -0.20 16 13 N -0.66 -9.72 5.47 -10.04 -0.05 -9.78 16 14 C 0.51 9.86 7.80 -10.99 -0.09 9.77 16 15 O -0.52 -12.05 13.14 5.54 0.07 -11.98 16 16 C -0.13 -2.51 5.64 -27.88 -0.16 -2.67 16 17 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 18 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 26 C 0.05 0.92 10.84 -17.22 -0.19 0.73 16 27 N -0.26 -4.42 11.64 30.71 0.36 -4.07 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.45 6.47 -51.93 -0.34 0.11 16 31 H 0.07 0.23 8.12 -51.92 -0.42 -0.19 16 32 H 0.07 0.26 8.12 -51.93 -0.42 -0.16 16 33 H 0.03 0.09 8.14 -51.93 -0.42 -0.33 16 34 H 0.04 0.16 8.12 -51.93 -0.42 -0.26 16 35 H 0.08 0.28 8.06 -51.93 -0.42 -0.14 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.58 6.55 -51.93 -0.34 0.24 16 38 H 0.40 0.72 8.47 -40.82 -0.35 0.37 16 39 H 0.12 0.33 8.07 -51.93 -0.42 -0.09 16 40 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.41 4.34 8.83 -40.82 -0.36 3.98 16 43 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 46 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.21 4.11 5.92 -52.48 -0.31 3.80 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -40.64 404.08 -7.86 -48.51 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.56 Total: 0.25 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.76 Total: 2.50 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.77 Total: -54.32 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: 0.16 Total: -19.71 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -40.64 -7.86 -48.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360283409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.896 kcal (2) G-P(sol) polarization free energy of solvation -40.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds