Wall clock time and date at job start Tue Mar 31 2020 21:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46907 * 110.99220 * 2 1 4 4 C 1.46899 * 111.00097 * 123.95042 * 2 1 3 5 5 C 1.52997 * 109.47254 * 66.04931 * 4 2 1 6 6 N 1.46497 * 109.46983 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99566 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00423 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99795 * 180.02562 * 7 6 5 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 6 11 11 C 1.35815 * 126.05152 * 124.99881 * 10 9 7 12 12 C 1.35761 * 107.56531 * 179.97438 * 11 10 9 13 13 N 1.40759 * 126.08157 * 179.97438 * 12 11 10 14 14 C 1.34778 * 119.99754 * 179.97438 * 13 12 11 15 15 O 1.21304 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.50698 * 119.99655 * 179.97438 * 14 13 12 17 17 C 1.53007 * 109.46854 * 180.02562 * 16 14 13 18 18 C 1.50706 * 109.46934 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99806 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99857 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47314 * 90.00083 * 22 20 18 24 24 H 1.48494 * 109.47402 * 210.00118 * 22 20 18 25 25 H 1.48502 * 109.47159 * 330.00029 * 22 20 18 26 26 C 1.40256 * 107.83472 * 0.02562 * 12 11 10 27 27 N 1.30835 * 108.33822 * 359.75231 * 26 12 11 28 28 H 1.09002 * 109.46773 * 296.04648 * 1 2 3 29 29 H 1.08998 * 109.47211 * 56.05194 * 1 2 3 30 30 H 1.08998 * 109.46611 * 176.05062 * 1 2 3 31 31 H 1.09010 * 109.46325 * 183.95642 * 3 2 1 32 32 H 1.08995 * 109.47065 * 303.94695 * 3 2 1 33 33 H 1.08991 * 109.47325 * 63.95675 * 3 2 1 34 34 H 1.09001 * 109.46901 * 306.04780 * 4 2 1 35 35 H 1.09002 * 109.47043 * 186.05001 * 4 2 1 36 36 H 1.09001 * 109.46832 * 59.99813 * 5 4 2 37 37 H 1.09002 * 109.47153 * 300.00004 * 5 4 2 38 38 H 0.96995 * 120.00423 * 359.97438 * 6 5 4 39 39 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 40 40 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 41 41 H 1.07999 * 126.22073 * 359.94688 * 11 10 9 42 42 H 0.96996 * 119.99994 * 359.97438 * 13 12 11 43 43 H 1.09000 * 109.47480 * 300.00088 * 16 14 13 44 44 H 1.08996 * 109.47356 * 60.00338 * 16 14 13 45 45 H 1.08994 * 109.46679 * 299.99951 * 17 16 14 46 46 H 1.08996 * 109.46999 * 59.99952 * 17 16 14 47 47 H 0.97007 * 119.99749 * 179.97438 * 21 20 18 48 48 H 1.08005 * 125.83005 * 179.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6317 -2.2425 0.9705 6 7 2.1572 -3.0064 2.1047 7 6 1.9569 -4.3375 2.1713 8 8 1.3412 -4.9029 1.2926 9 6 2.4970 -5.1233 3.3384 10 7 2.1487 -6.5372 3.1782 11 6 3.0184 -7.5803 3.1842 12 6 2.2967 -8.7165 3.0074 13 7 2.8117 -10.0253 2.9510 14 6 1.9792 -11.0698 2.7706 15 8 0.7861 -10.8819 2.6571 16 6 2.5305 -12.4710 2.7097 17 6 1.3836 -13.4616 2.4990 18 6 1.9349 -14.8629 2.4388 19 1 2.9971 -15.0301 2.5401 20 6 1.0833 -15.9314 2.2542 21 7 -0.2101 -15.7277 2.1313 22 14 1.7667 -17.6682 2.1788 23 1 1.7972 -18.2480 3.5456 24 1 0.9023 -18.5028 1.3063 25 1 3.1440 -17.6346 1.6245 26 6 0.9469 -8.3541 2.8897 27 7 0.8592 -7.0531 2.9968 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5739 -0.8525 30 1 -0.3632 -1.0252 -0.0708 31 1 3.0828 1.3434 -0.0709 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9232 34 1 1.5612 -0.3871 2.0628 35 1 3.0798 -0.6609 1.1757 36 1 2.0660 -2.6213 0.0452 37 1 0.5474 -2.3475 0.9324 38 1 2.6500 -2.5543 2.8073 39 1 3.5813 -5.0179 3.3767 40 1 2.0623 -4.7449 4.2636 41 1 4.0896 -7.5174 3.3068 42 1 3.7656 -10.1755 3.0421 43 1 3.2343 -12.5489 1.8809 44 1 3.0426 -12.7008 3.6440 45 1 0.6797 -13.3838 3.3275 46 1 0.8719 -13.2316 1.5645 47 1 -0.8093 -16.4794 2.0011 48 1 0.1206 -9.0334 2.7401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360283409.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:41 Heat of formation + Delta-G solvation = -15.527559 kcal Electronic energy + Delta-G solvation = -27452.783438 eV Core-core repulsion = 23350.637651 eV Total energy + Delta-G solvation = -4102.145787 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35979 -40.84418 -40.26187 -38.62997 -35.89901 -35.71369 -35.48442 -34.03924 -32.93064 -31.04317 -30.26626 -28.55007 -28.33622 -27.23340 -25.03681 -24.06984 -22.91315 -22.27551 -21.84538 -21.65637 -20.69436 -18.73305 -18.58627 -18.25417 -17.49074 -17.23582 -17.05191 -16.63894 -16.57616 -16.40753 -16.10755 -15.81793 -15.74445 -15.32694 -14.93912 -14.80471 -14.68572 -14.42151 -14.15628 -14.11819 -13.80163 -13.34801 -13.32188 -13.18901 -12.92918 -12.79650 -12.66180 -12.51186 -12.44951 -12.17645 -11.88943 -11.85807 -11.68356 -11.59333 -11.26162 -11.20263 -10.67215 -10.53356 -10.31180 -10.18262 -9.40447 -8.66775 -8.14786 -6.28700 0.76459 1.36105 1.44352 1.45433 1.47320 1.51639 1.58101 2.04658 2.21346 2.30301 2.48112 3.06123 3.18611 3.65849 3.76869 3.80843 3.92673 4.00281 4.10606 4.20872 4.24159 4.25142 4.37830 4.46409 4.49584 4.60517 4.61134 4.66498 4.67931 4.71598 4.83174 4.89339 5.01328 5.02456 5.10970 5.22437 5.30580 5.53961 5.67759 5.78626 5.89526 5.96105 5.99516 6.06193 6.20724 6.48678 6.56639 6.74554 6.90371 7.19816 7.39019 7.41798 8.97942 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001439 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.552578 B =19454.429117 C =19817.634176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.565 5.565 3 C 0.026 3.974 4 C 0.054 3.946 5 C 0.126 3.874 6 N -0.709 5.709 7 C 0.492 3.508 8 O -0.571 6.571 9 C 0.120 3.880 10 N -0.364 5.364 11 C 0.046 3.954 12 C -0.020 4.020 13 N -0.630 5.630 14 C 0.508 3.492 15 O -0.574 6.574 16 C -0.112 4.112 17 C 0.039 3.961 18 C -0.541 4.541 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.939 5.939 22 Si 0.974 3.026 23 H -0.271 1.271 24 H -0.289 1.289 25 H -0.254 1.254 26 C 0.017 3.983 27 N -0.298 5.298 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.054 0.946 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.423 0.577 39 H 0.185 0.815 40 H 0.143 0.857 41 H 0.238 0.762 42 H 0.430 0.570 43 H 0.109 0.891 44 H 0.112 0.888 45 H -0.017 1.017 46 H -0.019 1.019 47 H 0.261 0.739 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.216 38.096 4.330 41.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.290 5.290 3 C -0.122 4.122 4 C -0.075 4.075 5 C 0.002 3.998 6 N -0.364 5.364 7 C 0.278 3.722 8 O -0.448 6.448 9 C -0.003 4.003 10 N -0.149 5.149 11 C -0.101 4.101 12 C -0.124 4.124 13 N -0.277 5.277 14 C 0.297 3.703 15 O -0.453 6.453 16 C -0.152 4.152 17 C 0.002 3.998 18 C -0.579 4.579 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.214 1.214 25 H -0.177 1.177 26 C -0.170 4.170 27 N -0.120 5.120 28 H 0.052 0.948 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.261 0.739 39 H 0.202 0.798 40 H 0.161 0.839 41 H 0.254 0.746 42 H 0.269 0.731 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.002 0.998 46 H 0.000 1.000 47 H 0.070 0.930 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 14.210 38.637 3.176 41.290 hybrid contribution -0.079 -1.286 0.583 1.414 sum 14.131 37.351 3.759 40.112 Atomic orbital electron populations 1.22486 0.87039 1.02191 1.01312 1.61840 1.08573 1.15412 1.43171 1.22428 1.01340 0.87198 1.01234 1.22208 1.01926 0.90920 0.92401 1.21161 0.98298 0.91351 0.89028 1.45577 1.57868 1.06621 1.26360 1.21256 0.79901 0.83146 0.87920 1.90848 1.41573 1.70679 1.41702 1.21932 1.05974 0.74704 0.97695 1.48059 1.03764 1.06485 1.56622 1.22583 0.98319 0.84265 1.04956 1.18049 0.92698 0.86376 1.15254 1.42733 1.11459 1.02014 1.71516 1.21547 0.86201 0.88022 0.74523 1.90572 1.18388 1.86050 1.50241 1.21606 1.00297 0.88037 1.05229 1.18718 0.93112 0.93309 0.94696 1.21730 0.94670 0.92015 1.49463 0.90299 1.26144 0.94987 1.04631 0.94764 1.70195 1.04344 1.32688 1.50691 0.85318 0.78721 0.77984 0.78196 1.19694 1.21449 1.17744 1.24272 0.98235 0.92384 1.02086 1.77390 1.01996 1.09876 1.22760 0.94764 0.90609 0.92177 0.90278 0.90896 0.94770 0.92752 0.88139 0.92694 0.93436 0.73863 0.79820 0.83932 0.74558 0.73071 0.87305 0.87013 0.99830 1.00033 0.92988 0.81366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.32 127.69 1.19 1.38 16 2 N -0.57 -5.79 5.02 -948.82 -4.76 -10.55 16 3 C 0.03 0.16 9.57 127.69 1.22 1.38 16 4 C 0.05 0.37 5.07 86.30 0.44 0.81 16 5 C 0.13 1.63 5.60 86.38 0.48 2.11 16 6 N -0.71 -6.31 5.56 -463.06 -2.57 -8.88 16 7 C 0.49 8.53 7.86 87.66 0.69 9.22 16 8 O -0.57 -18.29 15.72 -3.03 -0.05 -18.34 16 9 C 0.12 1.15 7.00 85.63 0.60 1.75 16 10 N -0.36 -8.10 3.42 -350.71 -1.20 -9.30 16 11 C 0.05 0.87 11.52 83.50 0.96 1.84 16 12 C -0.02 -0.58 6.90 37.62 0.26 -0.32 16 13 N -0.63 -17.81 5.47 -304.04 -1.66 -19.47 16 14 C 0.51 20.15 7.80 87.66 0.68 20.83 16 15 O -0.57 -29.02 13.14 -3.11 -0.04 -29.06 16 16 C -0.11 -4.43 5.64 29.85 0.17 -4.27 16 17 C 0.04 2.21 4.26 29.85 0.13 2.34 16 18 C -0.54 -30.87 9.11 25.60 0.23 -30.64 16 19 H 0.08 4.05 7.74 -2.91 -0.02 4.02 16 20 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 21 N -0.94 -60.59 13.29 21.45 0.28 -60.31 16 22 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.25 -10.73 7.11 99.48 0.71 -10.02 16 26 C 0.02 0.66 10.84 85.33 0.92 1.58 16 27 N -0.30 -10.41 11.64 -56.76 -0.66 -11.07 16 28 H 0.03 0.30 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 30 H 0.06 0.79 6.47 -2.39 -0.02 0.78 16 31 H 0.08 0.34 8.12 -2.38 -0.02 0.32 16 32 H 0.07 0.42 8.12 -2.39 -0.02 0.41 16 33 H 0.03 0.16 8.14 -2.39 -0.02 0.14 16 34 H 0.05 0.26 8.12 -2.39 -0.02 0.24 16 35 H 0.10 0.34 8.06 -2.39 -0.02 0.33 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 0.84 6.55 -2.39 -0.02 0.83 16 38 H 0.42 -0.28 8.47 -92.71 -0.79 -1.06 16 39 H 0.18 -0.44 8.07 -2.39 -0.02 -0.46 16 40 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.24 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.43 7.66 8.83 -92.71 -0.82 6.84 16 43 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 44 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 45 H -0.02 -1.07 8.10 -2.39 -0.02 -1.08 16 46 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 47 H 0.26 15.84 8.31 -92.70 -0.77 15.07 16 48 H 0.17 7.67 5.92 -2.91 -0.02 7.65 16 Total: -1.00 -101.18 404.08 -0.81 -101.99 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -0.62 Total: 10.29 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 8.44 Total: 8.01 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -10.57 Total: -119.59 kcal Atomic # 8 Polarization: -47.31 SS G_CDS: -0.09 Total: -47.40 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -101.18 -0.81 -101.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360283409.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.461 kcal (2) G-P(sol) polarization free energy of solvation -101.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds