Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46907 * 110.99653 * 2 1 4 4 C 1.46900 * 110.99994 * 123.95160 * 2 1 3 5 5 C 1.52997 * 109.47025 * 170.00141 * 4 2 1 6 6 C 1.52997 * 109.47523 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47600 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00118 * 270.00488 * 7 6 5 9 9 C 1.50706 * 109.46922 * 263.07149 * 8 7 6 10 10 H 1.08001 * 119.99801 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99971 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00175 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00258 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47190 * 89.99211 * 13 11 9 15 15 H 1.48492 * 109.47475 * 209.99638 * 13 11 9 16 16 H 1.48504 * 109.46930 * 329.99934 * 13 11 9 17 17 C 1.34777 * 119.99940 * 89.99997 * 7 6 5 18 18 O 1.21362 * 120.00104 * 4.02172 * 17 7 6 19 19 C 1.49308 * 119.99797 * 184.02200 * 17 7 6 20 20 O 1.21396 * 120.00216 * 354.24597 * 19 17 7 21 21 N 1.34775 * 119.99796 * 174.24819 * 19 17 7 22 22 C 1.39197 * 120.00086 * 179.97438 * 21 19 17 23 23 C 1.36222 * 126.27182 * 359.97438 * 22 21 19 24 24 C 1.39688 * 107.85893 * 180.02562 * 23 22 21 25 25 N 1.30848 * 108.46203 * 359.97438 * 24 23 22 26 26 N 1.35852 * 126.27296 * 179.97438 * 22 21 19 27 27 C 1.46502 * 126.09922 * 0.24697 * 26 22 21 28 28 H 1.08999 * 109.46801 * 296.04567 * 1 2 3 29 29 H 1.08999 * 109.46849 * 56.04527 * 1 2 3 30 30 H 1.09001 * 109.46508 * 176.04714 * 1 2 3 31 31 H 1.08995 * 109.46842 * 183.95403 * 3 2 1 32 32 H 1.08995 * 109.47348 * 303.95811 * 3 2 1 33 33 H 1.08998 * 109.46865 * 63.95544 * 3 2 1 34 34 H 1.08998 * 109.46763 * 50.00665 * 4 2 1 35 35 H 1.08994 * 109.47441 * 290.00032 * 4 2 1 36 36 H 1.09003 * 109.47223 * 59.99936 * 5 4 2 37 37 H 1.09000 * 109.47316 * 300.00218 * 5 4 2 38 38 H 1.09003 * 109.47000 * 59.99705 * 6 5 4 39 39 H 1.09000 * 109.46926 * 300.00363 * 6 5 4 40 40 H 1.08999 * 109.47562 * 23.06922 * 8 7 6 41 41 H 1.08998 * 109.47559 * 143.07607 * 8 7 6 42 42 H 0.96996 * 120.00156 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00206 * 359.97438 * 21 19 17 44 44 H 1.08000 * 126.06575 * 0.02562 * 23 22 21 45 45 H 1.07999 * 125.77121 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47121 * 269.70914 * 27 26 22 47 47 H 1.08995 * 109.46620 * 29.71365 * 27 26 22 48 48 H 1.09001 * 109.47171 * 149.71440 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 6 4.0528 -1.7535 2.1548 7 7 5.4977 -1.9343 1.9950 8 6 6.0151 -3.1048 1.2820 9 6 6.3969 -4.1706 2.2767 10 1 6.2667 -3.9939 3.3342 11 6 6.9114 -5.3718 1.8367 12 7 7.2451 -6.3017 2.7047 13 14 7.1359 -5.6778 0.0076 14 1 8.4898 -5.2300 -0.4067 15 1 6.9865 -7.1281 -0.2737 16 1 6.1097 -4.9181 -0.7509 17 6 6.3511 -1.0237 2.5039 18 8 5.9269 -0.0929 3.1570 19 6 7.8185 -1.1600 2.2641 20 8 8.2528 -2.1441 1.7015 21 7 8.6609 -0.1904 2.6724 22 6 10.0290 -0.3177 2.4494 23 6 10.6517 -1.3619 1.8349 24 6 12.0224 -1.0935 1.8180 25 7 12.2254 0.0628 2.3959 26 7 10.9879 0.5767 2.8046 27 6 10.7678 1.8487 3.4971 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3632 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0709 32 1 1.5898 1.9164 -0.8523 33 1 1.7044 1.8724 0.9233 34 1 1.5091 -1.7406 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0194 0.9323 37 1 3.7025 -1.4965 0.0452 38 1 3.5663 -2.7282 2.1925 39 1 3.8548 -1.2127 3.0803 40 1 5.2468 -3.4913 0.6124 41 1 6.8923 -2.8185 0.7018 42 1 7.6066 -7.1469 2.3951 43 1 8.3139 0.5961 3.1216 44 1 10.1708 -2.2412 1.4323 45 1 12.7857 -1.7323 1.3989 46 1 10.6112 2.6395 2.7635 47 1 9.8888 1.7669 4.1364 48 1 11.6397 2.0862 4.1067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438743771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = 48.904530 kcal Electronic energy + Delta-G solvation = -29979.742910 eV Core-core repulsion = 25880.391108 eV Total energy + Delta-G solvation = -4099.351802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37218 -40.14445 -38.30429 -37.62343 -35.96113 -34.54076 -33.00910 -32.76016 -31.65849 -29.10609 -28.06893 -27.72438 -26.71670 -26.64210 -24.46056 -22.73000 -22.42616 -21.38151 -20.83151 -20.16646 -19.19416 -17.89203 -17.05142 -16.79146 -16.40318 -15.84170 -15.74475 -15.51921 -15.21914 -15.08053 -14.78529 -14.59906 -14.10402 -14.05240 -13.67829 -13.59676 -13.36059 -13.15565 -12.71983 -12.55698 -12.47459 -12.37421 -12.34710 -12.06663 -11.92850 -11.71963 -11.58844 -11.35852 -11.02993 -10.87593 -10.78183 -10.56132 -10.45978 -10.36479 -10.18135 -9.55098 -8.90289 -8.86754 -8.52421 -8.48455 -8.05984 -7.88183 -6.08553 -4.07684 1.54925 2.07457 2.25630 2.91022 3.09771 3.32248 3.36889 3.40323 3.65915 3.72686 3.96578 4.41384 4.52070 4.66256 4.94514 5.01353 5.03048 5.11569 5.19067 5.24239 5.25644 5.27915 5.39696 5.46306 5.48589 5.56729 5.58900 5.69168 5.70579 5.72215 5.82446 5.93865 6.06146 6.20298 6.30539 6.32077 6.43198 6.82162 6.89165 6.90921 6.91674 7.05286 7.06749 7.32607 7.52771 7.76499 7.86934 8.06239 8.35867 8.48895 8.91467 9.51195 11.04508 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.004053 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.519020 B = 6906.070383 C = 9511.692603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.058 3.942 5 C -0.131 4.131 6 C 0.117 3.883 7 N -0.548 5.548 8 C 0.190 3.810 9 C -0.523 4.523 10 H 0.072 0.928 11 C 0.082 3.918 12 N -0.895 5.895 13 Si 0.874 3.126 14 H -0.270 1.270 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.518 3.482 18 O -0.554 6.554 19 C 0.502 3.498 20 O -0.427 6.427 21 N -0.635 5.635 22 C 0.312 3.688 23 C -0.277 4.277 24 C 0.062 3.938 25 N -0.299 5.299 26 N -0.397 5.397 27 C 0.101 3.899 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.067 0.933 42 H 0.265 0.735 43 H 0.415 0.585 44 H 0.177 0.823 45 H 0.186 0.814 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 15.758 -2.986 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.170 4.170 6 C -0.007 4.007 7 N -0.277 5.277 8 C 0.070 3.930 9 C -0.561 4.561 10 H 0.090 0.910 11 C -0.121 4.121 12 N -0.534 5.534 13 Si 0.701 3.299 14 H -0.195 1.195 15 H -0.214 1.214 16 H -0.191 1.191 17 C 0.300 3.700 18 O -0.435 6.435 19 C 0.283 3.717 20 O -0.293 6.293 21 N -0.286 5.286 22 C 0.092 3.908 23 C -0.308 4.308 24 C -0.124 4.124 25 N -0.122 5.122 26 N -0.186 5.186 27 C -0.041 4.041 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.252 0.748 44 H 0.195 0.805 45 H 0.203 0.797 46 H 0.091 0.909 47 H 0.099 0.901 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.023 15.994 -3.095 16.569 hybrid contribution -0.852 -0.104 0.004 0.858 sum -3.874 15.890 -3.091 16.645 Atomic orbital electron populations 1.22374 0.87441 1.02287 1.00245 1.61967 1.07678 1.13980 1.43605 1.22433 1.01368 0.88715 1.00150 1.22064 0.95553 0.98329 0.91048 1.21966 0.94245 1.01054 0.99736 1.21460 0.79650 1.01289 0.98281 1.47863 1.05410 1.22596 1.51841 1.20525 0.95979 0.82873 0.93611 1.21089 1.43088 0.97842 0.94128 0.90978 1.24729 0.94251 0.95679 0.97462 1.69887 1.43099 1.06364 1.34001 0.86893 0.79644 0.77383 0.86026 1.19531 1.21351 1.19115 1.19393 0.86236 0.83206 0.81168 1.90672 1.78605 1.33526 1.40720 1.20317 0.88006 0.82632 0.80712 1.90815 1.76654 1.26673 1.35169 1.42550 1.02480 1.24298 1.59256 1.18093 0.81081 0.92321 0.99292 1.21819 0.93192 1.02603 1.13229 1.23749 0.96743 0.94005 0.97914 1.77377 0.99946 1.13421 1.21433 1.48624 1.03421 1.17272 1.49318 1.21774 1.03467 0.81986 0.96823 0.95786 0.91556 0.91263 0.90952 0.91684 0.95681 0.90350 0.94561 0.91718 0.90599 0.89281 0.90191 0.94932 0.91613 0.92553 0.74805 0.80540 0.79743 0.90929 0.90104 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 60.07 0.57 0.80 16 2 N -0.55 -6.23 5.02 -251.26 -1.26 -7.49 16 3 C 0.02 0.22 9.32 60.07 0.56 0.78 16 4 C 0.06 0.68 4.96 -3.83 -0.02 0.66 16 5 C -0.13 -1.80 5.46 -26.73 -0.15 -1.94 16 6 C 0.12 1.87 5.41 -4.05 -0.02 1.84 16 7 N -0.55 -10.64 2.48 -175.63 -0.43 -11.08 16 8 C 0.19 4.24 3.84 -5.19 -0.02 4.22 16 9 C -0.52 -14.03 8.89 -34.44 -0.31 -14.34 16 10 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 11 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 12 N -0.90 -26.75 13.96 55.43 0.77 -25.98 16 13 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 17 C 0.52 9.93 7.66 -11.65 -0.09 9.84 16 18 O -0.55 -10.47 16.04 5.49 0.09 -10.38 16 19 C 0.50 9.55 7.73 -11.65 -0.09 9.46 16 20 O -0.43 -9.33 9.51 5.46 0.05 -9.28 16 21 N -0.64 -10.00 5.40 -11.80 -0.06 -10.07 16 22 C 0.31 5.10 7.68 -152.86 -1.17 3.92 16 23 C -0.28 -4.87 9.65 -39.77 -0.38 -5.25 16 24 C 0.06 0.94 12.00 -17.43 -0.21 0.73 16 25 N -0.30 -4.66 12.56 30.59 0.38 -4.28 16 26 N -0.40 -5.69 4.04 -67.07 -0.27 -5.97 16 27 C 0.10 0.94 11.30 59.85 0.68 1.61 16 28 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 31 H 0.07 0.78 6.47 -51.93 -0.34 0.45 16 32 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.04 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 39 H 0.08 1.26 7.37 -51.93 -0.38 0.88 16 40 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 41 H 0.07 1.52 4.82 -51.93 -0.25 1.27 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.42 5.40 7.47 -40.82 -0.30 5.09 16 44 H 0.18 3.48 5.83 -52.49 -0.31 3.18 16 45 H 0.19 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.08 0.61 7.52 -51.93 -0.39 0.22 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.02 15.07 5.92 5.92 Total: -1.00 -33.24 393.02 -7.55 -40.80 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.33 Total: 7.07 kcal Atomic # 6 Polarization: 15.27 SS G_CDS: -0.75 Total: 14.52 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -0.87 Total: -64.85 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.14 Total: -19.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.24 -7.55 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438743771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.700 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds