Wall clock time and date at job start Tue Mar 31 2020 20:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46907 * 110.99653 * 2 1 4 4 C 1.46900 * 110.99994 * 123.95160 * 2 1 3 5 5 C 1.52997 * 109.47025 * 170.00141 * 4 2 1 6 6 C 1.52997 * 109.47523 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47600 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00118 * 270.00488 * 7 6 5 9 9 C 1.50706 * 109.46922 * 263.07149 * 8 7 6 10 10 H 1.08001 * 119.99801 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99971 * 179.97438 * 9 8 7 12 12 N 1.31519 * 120.00175 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00258 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47190 * 89.99211 * 13 11 9 15 15 H 1.48492 * 109.47475 * 209.99638 * 13 11 9 16 16 H 1.48504 * 109.46930 * 329.99934 * 13 11 9 17 17 C 1.34777 * 119.99940 * 89.99997 * 7 6 5 18 18 O 1.21362 * 120.00104 * 4.02172 * 17 7 6 19 19 C 1.49308 * 119.99797 * 184.02200 * 17 7 6 20 20 O 1.21396 * 120.00216 * 354.24597 * 19 17 7 21 21 N 1.34775 * 119.99796 * 174.24819 * 19 17 7 22 22 C 1.39197 * 120.00086 * 179.97438 * 21 19 17 23 23 C 1.36222 * 126.27182 * 359.97438 * 22 21 19 24 24 C 1.39688 * 107.85893 * 180.02562 * 23 22 21 25 25 N 1.30848 * 108.46203 * 359.97438 * 24 23 22 26 26 N 1.35852 * 126.27296 * 179.97438 * 22 21 19 27 27 C 1.46502 * 126.09922 * 0.24697 * 26 22 21 28 28 H 1.08999 * 109.46801 * 296.04567 * 1 2 3 29 29 H 1.08999 * 109.46849 * 56.04527 * 1 2 3 30 30 H 1.09001 * 109.46508 * 176.04714 * 1 2 3 31 31 H 1.08995 * 109.46842 * 183.95403 * 3 2 1 32 32 H 1.08995 * 109.47348 * 303.95811 * 3 2 1 33 33 H 1.08998 * 109.46865 * 63.95544 * 3 2 1 34 34 H 1.08998 * 109.46763 * 50.00665 * 4 2 1 35 35 H 1.08994 * 109.47441 * 290.00032 * 4 2 1 36 36 H 1.09003 * 109.47223 * 59.99936 * 5 4 2 37 37 H 1.09000 * 109.47316 * 300.00218 * 5 4 2 38 38 H 1.09003 * 109.47000 * 59.99705 * 6 5 4 39 39 H 1.09000 * 109.46926 * 300.00363 * 6 5 4 40 40 H 1.08999 * 109.47562 * 23.06922 * 8 7 6 41 41 H 1.08998 * 109.47559 * 143.07607 * 8 7 6 42 42 H 0.96996 * 120.00156 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00206 * 359.97438 * 21 19 17 44 44 H 1.08000 * 126.06575 * 0.02562 * 23 22 21 45 45 H 1.07999 * 125.77121 * 179.97438 * 24 23 22 46 46 H 1.09000 * 109.47121 * 269.70914 * 27 26 22 47 47 H 1.08995 * 109.46620 * 29.71365 * 27 26 22 48 48 H 1.09001 * 109.47171 * 149.71440 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.5045 -0.9553 0.9704 6 6 4.0528 -1.7535 2.1548 7 7 5.4977 -1.9343 1.9950 8 6 6.0151 -3.1048 1.2820 9 6 6.3969 -4.1706 2.2767 10 1 6.2667 -3.9939 3.3342 11 6 6.9114 -5.3718 1.8367 12 7 7.2451 -6.3017 2.7047 13 14 7.1359 -5.6778 0.0076 14 1 8.4898 -5.2300 -0.4067 15 1 6.9865 -7.1281 -0.2737 16 1 6.1097 -4.9181 -0.7509 17 6 6.3511 -1.0237 2.5039 18 8 5.9269 -0.0929 3.1570 19 6 7.8185 -1.1600 2.2641 20 8 8.2528 -2.1441 1.7015 21 7 8.6609 -0.1904 2.6724 22 6 10.0290 -0.3177 2.4494 23 6 10.6517 -1.3619 1.8349 24 6 12.0224 -1.0935 1.8180 25 7 12.2254 0.0628 2.3959 26 7 10.9879 0.5767 2.8046 27 6 10.7678 1.8487 3.4971 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3632 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0709 32 1 1.5898 1.9164 -0.8523 33 1 1.7044 1.8724 0.9233 34 1 1.5091 -1.7406 1.1756 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0194 0.9323 37 1 3.7025 -1.4965 0.0452 38 1 3.5663 -2.7282 2.1925 39 1 3.8548 -1.2127 3.0803 40 1 5.2468 -3.4913 0.6124 41 1 6.8923 -2.8185 0.7018 42 1 7.6066 -7.1469 2.3951 43 1 8.3139 0.5961 3.1216 44 1 10.1708 -2.2412 1.4323 45 1 12.7857 -1.7323 1.3989 46 1 10.6112 2.6395 2.7635 47 1 9.8888 1.7669 4.1364 48 1 11.6397 2.0862 4.1067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438743771.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:00 Heat of formation + Delta-G solvation = 25.049071 kcal Electronic energy + Delta-G solvation = -29980.777361 eV Core-core repulsion = 25880.391108 eV Total energy + Delta-G solvation = -4100.386252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.67911 -41.57615 -39.70783 -38.62911 -37.45098 -35.93125 -34.68966 -34.05192 -33.05084 -30.40882 -29.87537 -28.48036 -27.90136 -27.65532 -25.77905 -24.43673 -23.73437 -22.58678 -21.80919 -21.45027 -20.60912 -19.23986 -19.05357 -18.27702 -17.84829 -17.22161 -16.90622 -16.58731 -16.48494 -16.23356 -16.05938 -15.80320 -15.70595 -15.19536 -14.92440 -14.88586 -14.76567 -14.38841 -14.25550 -13.83737 -13.67208 -13.54397 -13.28836 -13.26658 -13.02416 -12.95627 -12.63525 -12.59206 -12.43160 -12.28744 -12.23060 -12.16248 -11.96104 -11.72457 -11.65047 -11.51134 -10.76381 -10.35497 -9.99238 -9.65897 -9.30598 -9.22794 -8.23371 -6.26112 0.09276 0.78339 0.94290 1.41275 1.46649 1.51127 1.72640 1.80527 2.18709 2.40438 2.41455 3.03855 3.14648 3.19517 3.57258 3.92748 4.08803 4.15782 4.20250 4.36184 4.36797 4.40185 4.44001 4.49784 4.50904 4.60113 4.61042 4.64419 4.70871 4.76004 4.78657 4.81073 5.00618 5.03329 5.03960 5.08244 5.10422 5.27134 5.43484 5.52136 5.68132 5.80111 6.00305 6.06678 6.07897 6.12205 6.34593 6.59166 6.69417 6.72004 6.90426 7.36634 8.93416 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008264 B = 0.004053 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3387.519020 B = 6906.070383 C = 9511.692603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.022 3.978 4 C 0.063 3.937 5 C -0.117 4.117 6 C 0.114 3.886 7 N -0.555 5.555 8 C 0.202 3.798 9 C -0.515 4.515 10 H 0.027 0.973 11 C 0.024 3.976 12 N -0.947 5.947 13 Si 0.935 3.065 14 H -0.272 1.272 15 H -0.286 1.286 16 H -0.238 1.238 17 C 0.517 3.483 18 O -0.551 6.551 19 C 0.501 3.499 20 O -0.462 6.462 21 N -0.616 5.616 22 C 0.302 3.698 23 C -0.305 4.305 24 C 0.062 3.938 25 N -0.306 5.306 26 N -0.389 5.389 27 C 0.087 3.913 28 H 0.029 0.971 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.265 0.735 43 H 0.429 0.571 44 H 0.151 0.849 45 H 0.213 0.787 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.733 17.863 -4.164 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.126 4.126 4 C -0.065 4.065 5 C -0.156 4.156 6 C -0.008 4.008 7 N -0.284 5.284 8 C 0.081 3.919 9 C -0.553 4.553 10 H 0.045 0.955 11 C -0.174 4.174 12 N -0.587 5.587 13 Si 0.759 3.241 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.161 1.161 17 C 0.299 3.701 18 O -0.431 6.431 19 C 0.282 3.718 20 O -0.330 6.330 21 N -0.268 5.268 22 C 0.081 3.919 23 C -0.337 4.337 24 C -0.123 4.123 25 N -0.129 5.129 26 N -0.178 5.178 27 C -0.052 4.052 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.269 0.731 44 H 0.169 0.831 45 H 0.230 0.770 46 H 0.112 0.888 47 H 0.117 0.883 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.706 18.191 -4.248 19.044 hybrid contribution -0.636 -0.630 0.510 1.031 sum -4.342 17.560 -3.738 18.471 Atomic orbital electron populations 1.22423 0.86002 1.02867 1.01030 1.61961 1.09086 1.14501 1.43286 1.22444 1.00817 0.88433 1.00934 1.21978 0.94002 0.98975 0.91557 1.21802 0.95649 1.00080 0.98035 1.21650 0.77807 1.01859 0.99528 1.47864 1.06841 1.21831 1.51819 1.20204 0.96440 0.82589 0.92649 1.21238 1.42092 0.99084 0.92921 0.95475 1.25578 0.94096 0.95478 1.02213 1.70039 1.45123 1.07134 1.36436 0.85896 0.80118 0.77542 0.80527 1.19733 1.21144 1.16083 1.19458 0.86368 0.83248 0.81057 1.90663 1.78643 1.33347 1.40467 1.20382 0.88246 0.82743 0.80437 1.90811 1.77104 1.28112 1.36999 1.42279 1.02201 1.23948 1.58350 1.18069 0.81315 0.92889 0.99610 1.21761 0.94607 1.02643 1.14656 1.24131 0.96370 0.94194 0.97579 1.77336 1.00643 1.13495 1.21447 1.48967 1.02350 1.18011 1.48520 1.22246 1.05070 0.80281 0.97644 0.95274 0.90406 0.90908 0.91926 0.90311 0.95393 0.89734 0.94208 0.92144 0.91342 0.89207 0.89999 0.93471 0.91629 0.92602 0.73149 0.83107 0.77001 0.88789 0.88298 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.57 127.69 1.22 1.61 16 2 N -0.56 -11.65 5.02 -948.84 -4.76 -16.41 16 3 C 0.02 0.40 9.32 127.69 1.19 1.59 16 4 C 0.06 1.37 4.96 86.30 0.43 1.80 16 5 C -0.12 -3.05 5.46 30.59 0.17 -2.88 16 6 C 0.11 3.56 5.41 86.38 0.47 4.02 16 7 N -0.55 -21.41 2.48 -827.92 -2.05 -23.46 16 8 C 0.20 8.99 3.84 85.64 0.33 9.32 16 9 C -0.51 -28.31 8.89 25.60 0.23 -28.08 16 10 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 11 C 0.02 1.39 5.47 84.65 0.46 1.85 16 12 N -0.95 -58.49 13.96 21.45 0.30 -58.19 16 13 Si 0.94 43.14 27.47 68.60 1.88 45.02 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 17 C 0.52 19.67 7.66 87.23 0.67 20.34 16 18 O -0.55 -20.24 16.04 -3.28 -0.05 -20.29 16 19 C 0.50 19.15 7.73 87.23 0.67 19.83 16 20 O -0.46 -20.64 9.51 -3.39 -0.03 -20.67 16 21 N -0.62 -19.03 5.40 -309.57 -1.67 -20.70 16 22 C 0.30 9.70 7.68 131.25 1.01 10.71 16 23 C -0.30 -10.84 9.65 22.15 0.21 -10.63 16 24 C 0.06 1.86 12.00 85.19 1.02 2.88 16 25 N -0.31 -9.09 12.56 -57.14 -0.72 -9.81 16 26 N -0.39 -10.52 4.04 -366.12 -1.48 -12.00 16 27 C 0.09 1.38 11.30 127.77 1.44 2.82 16 28 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 1.05 8.12 -2.39 -0.02 1.03 16 30 H 0.07 1.09 8.12 -2.39 -0.02 1.07 16 31 H 0.06 1.26 6.47 -2.39 -0.02 1.25 16 32 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 35 H 0.04 0.83 8.12 -2.39 -0.02 0.82 16 36 H 0.06 1.63 6.55 -2.39 -0.02 1.62 16 37 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 39 H 0.08 2.52 7.37 -2.39 -0.02 2.51 16 40 H 0.05 1.98 7.08 -2.39 -0.02 1.96 16 41 H 0.07 3.01 4.82 -2.41 -0.01 3.00 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.43 10.51 7.47 -92.71 -0.69 9.81 16 44 H 0.15 6.22 5.83 -2.91 -0.02 6.20 16 45 H 0.21 4.74 8.06 -2.91 -0.02 4.71 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.10 1.21 7.52 -2.39 -0.02 1.19 16 48 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -73.36 393.02 1.17 -72.19 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.23 Total: 29.13 kcal Atomic # 6 Polarization: 25.66 SS G_CDS: 9.52 Total: 35.18 kcal Atomic # 7 Polarization: -130.18 SS G_CDS: -10.38 Total: -140.57 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.08 Total: -40.96 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.88 Total: 45.02 kcal Total: -73.36 1.17 -72.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438743771.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.243 kcal (2) G-P(sol) polarization free energy of solvation -73.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds