Wall clock time and date at job start Tue Mar 31 2020 20:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00176 * 2 1 4 4 C 1.46902 * 110.99682 * 123.95602 * 2 1 3 5 5 C 1.52996 * 109.47540 * 66.04554 * 4 2 1 6 6 C 1.53001 * 109.47304 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00220 * 269.99964 * 7 6 5 9 9 C 1.50699 * 109.46962 * 263.07853 * 8 7 6 10 10 H 1.07999 * 120.00258 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99894 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99871 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00021 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47199 * 90.00471 * 13 11 9 15 15 H 1.48501 * 109.47200 * 210.00261 * 13 11 9 16 16 H 1.48497 * 109.47319 * 330.00084 * 13 11 9 17 17 C 1.34777 * 119.99695 * 89.99691 * 7 6 5 18 18 O 1.21356 * 120.00458 * 4.02602 * 17 7 6 19 19 C 1.49345 * 119.99653 * 184.01907 * 17 7 6 20 20 O 1.21382 * 120.00079 * 354.25134 * 19 17 7 21 21 N 1.34778 * 120.00158 * 174.24910 * 19 17 7 22 22 C 1.39926 * 120.00422 * 180.27921 * 21 19 17 23 23 C 1.40465 * 125.98028 * 359.43590 * 22 21 19 24 24 C 1.35211 * 107.86732 * 179.88913 * 23 22 21 25 25 N 1.34987 * 107.87678 * 0.37167 * 24 23 22 26 26 C 1.46501 * 125.97153 * 179.74021 * 25 24 23 27 27 N 1.31272 * 125.98432 * 179.74785 * 22 21 19 28 28 H 1.09003 * 109.47250 * 296.04774 * 1 2 3 29 29 H 1.08999 * 109.47535 * 56.04551 * 1 2 3 30 30 H 1.09002 * 109.47629 * 176.04747 * 1 2 3 31 31 H 1.09006 * 109.47286 * 183.95568 * 3 2 1 32 32 H 1.09005 * 109.47250 * 303.95664 * 3 2 1 33 33 H 1.09003 * 109.47435 * 63.95133 * 3 2 1 34 34 H 1.09000 * 109.46903 * 306.03750 * 4 2 1 35 35 H 1.09004 * 109.46786 * 186.04563 * 4 2 1 36 36 H 1.09008 * 109.47113 * 59.99414 * 5 4 2 37 37 H 1.09004 * 109.47088 * 299.99824 * 5 4 2 38 38 H 1.08992 * 109.47079 * 59.99618 * 6 5 4 39 39 H 1.08999 * 109.46534 * 299.99440 * 6 5 4 40 40 H 1.09002 * 109.46998 * 23.07553 * 8 7 6 41 41 H 1.08995 * 109.46965 * 143.07272 * 8 7 6 42 42 H 0.96999 * 119.99989 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99886 * 359.97438 * 21 19 17 44 44 H 1.08004 * 126.06195 * 0.03887 * 23 22 21 45 45 H 1.08009 * 126.05981 * 180.11482 * 24 23 22 46 46 H 1.09004 * 109.47015 * 270.00702 * 26 25 24 47 47 H 1.09004 * 109.46802 * 30.00090 * 26 25 24 48 48 H 1.08993 * 109.46866 * 150.00119 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1549 7 7 1.8311 -4.4543 1.9951 8 6 0.5746 -4.9657 2.5482 9 6 0.8369 -5.5963 3.8915 10 1 1.8394 -5.6147 4.2930 11 6 -0.2029 -6.1497 4.6081 12 7 -1.4235 -6.1277 4.1191 13 14 0.1224 -6.9319 6.2729 14 1 -0.0180 -5.9064 7.3376 15 1 -0.8559 -8.0245 6.5061 16 1 1.4995 -7.4868 6.2986 17 6 2.6660 -5.2845 1.3391 18 8 3.7395 -4.8786 0.9447 19 6 2.2700 -6.7042 1.0977 20 8 1.2451 -7.1390 1.5813 21 7 3.0506 -7.5026 0.3430 22 6 2.6767 -8.8310 0.1120 23 6 1.5262 -9.4633 0.6115 24 6 1.5254 -10.7385 0.1622 25 7 2.6348 -10.9148 -0.5864 26 6 3.0297 -12.1537 -1.2612 27 7 3.3426 -9.7062 -0.6049 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 2.0657 -2.6214 0.0451 37 1 0.5471 -2.3475 0.9323 38 1 1.7463 -2.6619 3.0803 39 1 3.2645 -2.9356 2.1924 40 1 -0.1323 -4.1441 2.6643 41 1 0.1569 -5.7115 1.8720 42 1 -2.1551 -6.5167 4.6234 43 1 3.8695 -7.1550 -0.0438 44 1 0.7743 -9.0103 1.2407 45 1 0.7729 -11.4851 0.3693 46 1 3.6468 -12.7518 -0.5906 47 1 2.1384 -12.7182 -1.5351 48 1 3.5977 -11.9128 -2.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438749967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:08 Heat of formation + Delta-G solvation = 45.943762 kcal Electronic energy + Delta-G solvation = -29629.355040 eV Core-core repulsion = 25529.874849 eV Total energy + Delta-G solvation = -4099.480190 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.15447 -39.99012 -38.12625 -37.47305 -35.72944 -34.47417 -32.78389 -32.09864 -31.45701 -29.84682 -27.63619 -27.35825 -26.94963 -26.00694 -24.14242 -22.93923 -22.28249 -21.29340 -20.70439 -20.06898 -18.97248 -17.27020 -16.87454 -16.48940 -16.32227 -15.64013 -15.55346 -15.48892 -15.16513 -15.05621 -14.72474 -14.52276 -14.22864 -13.89500 -13.57815 -13.52463 -13.05669 -12.78031 -12.65543 -12.52672 -12.41846 -12.29053 -12.12882 -11.80153 -11.66118 -11.57412 -11.31432 -11.21628 -10.91056 -10.85476 -10.57367 -10.49145 -10.39917 -10.29757 -9.95183 -9.65283 -8.73402 -8.64521 -8.36923 -8.26573 -8.00469 -7.79856 -6.02564 -4.05127 1.77616 2.25129 2.27306 3.09968 3.15757 3.31074 3.37861 3.42772 3.87783 3.98949 4.17551 4.46282 4.65656 4.88240 5.04783 5.06841 5.07455 5.13268 5.26209 5.29497 5.33860 5.36843 5.52665 5.58630 5.61698 5.62340 5.72423 5.76835 5.84219 5.89036 5.97050 6.03367 6.08050 6.36860 6.47730 6.52230 6.69182 7.01325 7.02783 7.04209 7.22444 7.27037 7.43051 7.46191 7.86864 8.00473 8.12339 8.20160 8.37478 8.66180 8.96854 9.58025 11.06049 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.003604 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.652136 B = 7767.494238 C =10297.306472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.117 3.883 7 N -0.556 5.556 8 C 0.221 3.779 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.071 3.929 12 N -0.889 5.889 13 Si 0.892 3.108 14 H -0.282 1.282 15 H -0.286 1.286 16 H -0.275 1.275 17 C 0.514 3.486 18 O -0.556 6.556 19 C 0.500 3.500 20 O -0.429 6.429 21 N -0.624 5.624 22 C 0.309 3.691 23 C -0.261 4.261 24 C 0.058 3.942 25 N -0.379 5.379 26 C 0.110 3.890 27 N -0.331 5.331 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.262 0.738 43 H 0.420 0.580 44 H 0.179 0.821 45 H 0.176 0.824 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 0.014 -9.705 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.169 4.169 6 C -0.006 4.006 7 N -0.286 5.286 8 C 0.103 3.897 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.132 4.132 12 N -0.528 5.528 13 Si 0.720 3.280 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.296 3.704 18 O -0.437 6.437 19 C 0.281 3.719 20 O -0.295 6.295 21 N -0.276 5.276 22 C 0.053 3.947 23 C -0.292 4.292 24 C -0.088 4.088 25 N -0.164 5.164 26 C -0.032 4.032 27 N -0.162 5.162 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.094 0.906 42 H 0.071 0.929 43 H 0.257 0.743 44 H 0.196 0.804 45 H 0.193 0.807 46 H 0.088 0.912 47 H 0.104 0.896 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.362 -0.625 -10.628 11.920 hybrid contribution -0.529 0.101 2.087 2.156 sum 4.833 -0.524 -8.541 9.827 Atomic orbital electron populations 1.22450 0.87333 1.02839 1.00160 1.61964 1.08162 1.13451 1.43657 1.22366 1.00723 0.89020 1.00217 1.22065 1.00142 0.93687 0.91035 1.21952 1.01858 0.93424 0.99653 1.21400 1.01047 0.80142 0.98037 1.48210 1.22459 1.07758 1.50149 1.20123 0.78505 0.95689 0.95409 1.21235 0.94397 1.37947 1.02170 0.92754 1.24786 0.94930 0.95632 0.97851 1.69918 0.99450 1.45338 1.38069 0.86593 0.78134 0.79089 0.84154 1.20818 1.21142 1.20008 1.19509 0.84741 0.85896 0.80277 1.90670 1.22604 1.77183 1.53230 1.20405 0.84359 0.87648 0.79517 1.90853 1.21668 1.73510 1.43448 1.42394 1.27026 1.06887 1.51269 1.19128 0.93901 0.85554 0.96081 1.22078 1.02398 0.93723 1.10952 1.22577 0.91763 0.98581 0.95831 1.47992 1.17948 1.09089 1.41392 1.21751 1.01840 0.81823 0.97783 1.77317 1.20172 0.91334 1.27393 0.95600 0.91740 0.90688 0.91428 0.91615 0.95818 0.94553 0.90643 0.90941 0.91370 0.89866 0.90364 0.95032 0.90639 0.92868 0.74312 0.80405 0.80700 0.91161 0.89636 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.82 5.02 -251.26 -1.26 -8.08 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 5 C -0.13 -1.97 5.46 -26.73 -0.15 -2.12 16 6 C 0.12 2.03 5.41 -4.04 -0.02 2.01 16 7 N -0.56 -11.58 2.48 -175.61 -0.43 -12.02 16 8 C 0.22 5.36 4.77 -5.19 -0.02 5.33 16 9 C -0.52 -13.89 8.33 -34.44 -0.29 -14.17 16 10 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 11 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 12 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 13 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.51 10.71 7.66 -11.63 -0.09 10.62 16 18 O -0.56 -11.60 16.04 5.49 0.09 -11.51 16 19 C 0.50 10.36 7.73 -11.63 -0.09 10.27 16 20 O -0.43 -9.97 9.51 5.47 0.05 -9.92 16 21 N -0.62 -11.35 5.43 -11.58 -0.06 -11.41 16 22 C 0.31 5.63 8.10 -154.56 -1.25 4.37 16 23 C -0.26 -4.64 9.60 -39.82 -0.38 -5.02 16 24 C 0.06 0.79 11.48 -17.24 -0.20 0.59 16 25 N -0.38 -5.14 4.01 -68.18 -0.27 -5.41 16 26 C 0.11 0.87 11.47 59.85 0.69 1.56 16 27 N -0.33 -5.56 12.59 31.41 0.40 -5.17 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 31 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 32 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 36 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.07 1.08 6.55 -51.93 -0.34 0.74 16 38 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 39 H 0.08 1.33 7.37 -51.93 -0.38 0.94 16 40 H 0.03 0.79 8.02 -51.93 -0.42 0.37 16 41 H 0.08 1.98 5.39 -51.93 -0.28 1.70 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.42 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.18 3.57 5.91 -52.48 -0.31 3.26 16 45 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 398.23 15.07 6.00 6.00 Total: -1.00 -32.76 398.23 -8.00 -40.76 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -7.43 Total: 7.16 kcal Atomic # 6 Polarization: 18.41 SS G_CDS: -0.79 Total: 17.63 kcal Atomic # 7 Polarization: -65.62 SS G_CDS: -0.90 Total: -66.52 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.14 Total: -21.42 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.76 -8.00 -40.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438749967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.709 kcal (2) G-P(sol) polarization free energy of solvation -32.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds