Wall clock time and date at job start Tue Mar 31 2020 20:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46891 * 111.00176 * 2 1 4 4 C 1.46902 * 110.99682 * 123.95602 * 2 1 3 5 5 C 1.52996 * 109.47540 * 66.04554 * 4 2 1 6 6 C 1.53001 * 109.47304 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00220 * 269.99964 * 7 6 5 9 9 C 1.50699 * 109.46962 * 263.07853 * 8 7 6 10 10 H 1.07999 * 120.00258 * 359.97438 * 9 8 7 11 11 C 1.37875 * 119.99894 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99871 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00021 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47199 * 90.00471 * 13 11 9 15 15 H 1.48501 * 109.47200 * 210.00261 * 13 11 9 16 16 H 1.48497 * 109.47319 * 330.00084 * 13 11 9 17 17 C 1.34777 * 119.99695 * 89.99691 * 7 6 5 18 18 O 1.21356 * 120.00458 * 4.02602 * 17 7 6 19 19 C 1.49345 * 119.99653 * 184.01907 * 17 7 6 20 20 O 1.21382 * 120.00079 * 354.25134 * 19 17 7 21 21 N 1.34778 * 120.00158 * 174.24910 * 19 17 7 22 22 C 1.39926 * 120.00422 * 180.27921 * 21 19 17 23 23 C 1.40465 * 125.98028 * 359.43590 * 22 21 19 24 24 C 1.35211 * 107.86732 * 179.88913 * 23 22 21 25 25 N 1.34987 * 107.87678 * 0.37167 * 24 23 22 26 26 C 1.46501 * 125.97153 * 179.74021 * 25 24 23 27 27 N 1.31272 * 125.98432 * 179.74785 * 22 21 19 28 28 H 1.09003 * 109.47250 * 296.04774 * 1 2 3 29 29 H 1.08999 * 109.47535 * 56.04551 * 1 2 3 30 30 H 1.09002 * 109.47629 * 176.04747 * 1 2 3 31 31 H 1.09006 * 109.47286 * 183.95568 * 3 2 1 32 32 H 1.09005 * 109.47250 * 303.95664 * 3 2 1 33 33 H 1.09003 * 109.47435 * 63.95133 * 3 2 1 34 34 H 1.09000 * 109.46903 * 306.03750 * 4 2 1 35 35 H 1.09004 * 109.46786 * 186.04563 * 4 2 1 36 36 H 1.09008 * 109.47113 * 59.99414 * 5 4 2 37 37 H 1.09004 * 109.47088 * 299.99824 * 5 4 2 38 38 H 1.08992 * 109.47079 * 59.99618 * 6 5 4 39 39 H 1.08999 * 109.46534 * 299.99440 * 6 5 4 40 40 H 1.09002 * 109.46998 * 23.07553 * 8 7 6 41 41 H 1.08995 * 109.46965 * 143.07272 * 8 7 6 42 42 H 0.96999 * 119.99989 * 180.02562 * 12 11 9 43 43 H 0.97000 * 119.99886 * 359.97438 * 21 19 17 44 44 H 1.08004 * 126.06195 * 0.03887 * 23 22 21 45 45 H 1.08009 * 126.05981 * 180.11482 * 24 23 22 46 46 H 1.09004 * 109.47015 * 270.00702 * 26 25 24 47 47 H 1.09004 * 109.46802 * 30.00090 * 26 25 24 48 48 H 1.08993 * 109.46866 * 150.00119 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0405 2.1549 7 7 1.8311 -4.4543 1.9951 8 6 0.5746 -4.9657 2.5482 9 6 0.8369 -5.5963 3.8915 10 1 1.8394 -5.6147 4.2930 11 6 -0.2029 -6.1497 4.6081 12 7 -1.4235 -6.1277 4.1191 13 14 0.1224 -6.9319 6.2729 14 1 -0.0180 -5.9064 7.3376 15 1 -0.8559 -8.0245 6.5061 16 1 1.4995 -7.4868 6.2986 17 6 2.6660 -5.2845 1.3391 18 8 3.7395 -4.8786 0.9447 19 6 2.2700 -6.7042 1.0977 20 8 1.2451 -7.1390 1.5813 21 7 3.0506 -7.5026 0.3430 22 6 2.6767 -8.8310 0.1120 23 6 1.5262 -9.4633 0.6115 24 6 1.5254 -10.7385 0.1622 25 7 2.6348 -10.9148 -0.5864 26 6 3.0297 -12.1537 -1.2612 27 7 3.3426 -9.7062 -0.6049 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0828 1.3431 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 2.0657 -2.6214 0.0451 37 1 0.5471 -2.3475 0.9323 38 1 1.7463 -2.6619 3.0803 39 1 3.2645 -2.9356 2.1924 40 1 -0.1323 -4.1441 2.6643 41 1 0.1569 -5.7115 1.8720 42 1 -2.1551 -6.5167 4.6234 43 1 3.8695 -7.1550 -0.0438 44 1 0.7743 -9.0103 1.2407 45 1 0.7729 -11.4851 0.3693 46 1 3.6468 -12.7518 -0.5906 47 1 2.1384 -12.7182 -1.5351 48 1 3.5977 -11.9128 -2.1597 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438749967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:06 Heat of formation + Delta-G solvation = 23.152800 kcal Electronic energy + Delta-G solvation = -29630.343330 eV Core-core repulsion = 25529.874849 eV Total energy + Delta-G solvation = -4100.468481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.47151 -41.53734 -39.62986 -38.60990 -37.34370 -35.91915 -34.70938 -33.20875 -32.92721 -31.07190 -29.24789 -28.47765 -28.26199 -27.12515 -25.57149 -24.73713 -23.60232 -22.48654 -21.80055 -21.44963 -20.50075 -18.89516 -18.39584 -18.24022 -17.81533 -16.99856 -16.85227 -16.73516 -16.48856 -16.34570 -16.13229 -15.91661 -15.65686 -15.14570 -14.97461 -14.70586 -14.50931 -14.26986 -13.96030 -13.69830 -13.60263 -13.40540 -13.23862 -13.18131 -13.11693 -12.73454 -12.69158 -12.60519 -12.42310 -12.39747 -12.22689 -11.90567 -11.83117 -11.77530 -11.64833 -11.48579 -10.64043 -10.14604 -9.91044 -9.60888 -9.29992 -9.22511 -8.11591 -6.20449 0.25074 0.96172 0.98275 1.40297 1.42393 1.51478 1.75204 1.84298 2.34786 2.43082 2.61664 3.06044 3.21925 3.35227 3.76700 3.93052 4.04814 4.10909 4.22600 4.37908 4.43709 4.51282 4.51909 4.57483 4.60397 4.60747 4.67785 4.75243 4.75570 4.80836 4.84443 4.88067 5.01115 5.02840 5.03852 5.13189 5.24946 5.43092 5.58616 5.68650 5.79718 5.95734 6.06351 6.13420 6.14081 6.16366 6.28596 6.65158 6.83038 6.83950 7.05369 7.45815 8.96446 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.003604 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.652136 B = 7767.494238 C =10297.306472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.116 4.116 6 C 0.115 3.885 7 N -0.560 5.560 8 C 0.241 3.759 9 C -0.525 4.525 10 H 0.043 0.957 11 C 0.026 3.974 12 N -0.917 5.917 13 Si 0.950 3.050 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.512 3.488 18 O -0.556 6.556 19 C 0.499 3.501 20 O -0.460 6.460 21 N -0.613 5.613 22 C 0.283 3.717 23 C -0.306 4.306 24 C 0.086 3.914 25 N -0.368 5.368 26 C 0.096 3.904 27 N -0.346 5.346 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.426 0.574 44 H 0.148 0.852 45 H 0.222 0.778 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.305 -0.968 -10.083 11.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.155 4.155 6 C -0.007 4.007 7 N -0.289 5.289 8 C 0.121 3.879 9 C -0.564 4.564 10 H 0.062 0.938 11 C -0.174 4.174 12 N -0.557 5.557 13 Si 0.776 3.224 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.294 3.706 18 O -0.437 6.437 19 C 0.279 3.721 20 O -0.328 6.328 21 N -0.264 5.264 22 C 0.029 3.971 23 C -0.336 4.336 24 C -0.061 4.061 25 N -0.152 5.152 26 C -0.043 4.043 27 N -0.178 5.178 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.265 0.735 44 H 0.166 0.834 45 H 0.239 0.761 46 H 0.106 0.894 47 H 0.141 0.859 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.094 -1.597 -11.043 12.714 hybrid contribution -0.685 0.276 2.081 2.208 sum 5.409 -1.321 -8.963 10.551 Atomic orbital electron populations 1.22449 0.87039 1.02225 1.01020 1.61950 1.08626 1.14978 1.43335 1.22423 1.01113 0.87646 1.01081 1.21962 1.00737 0.91930 0.91644 1.21781 1.00902 0.94943 0.97863 1.21596 1.01522 0.78443 0.99163 1.48170 1.21503 1.09209 1.50024 1.19648 0.79555 0.94573 0.94164 1.21395 0.93827 1.38013 1.03137 0.93833 1.25474 0.94780 0.96104 1.01015 1.70013 1.00120 1.46178 1.39358 0.85694 0.77601 0.78514 0.80618 1.19583 1.20650 1.20455 1.19588 0.84694 0.86080 0.80199 1.90654 1.22444 1.77301 1.53344 1.20414 0.84252 0.87762 0.79631 1.90858 1.22947 1.74014 1.45029 1.42198 1.26675 1.07212 1.50359 1.19272 0.94767 0.85532 0.97493 1.21952 1.02627 0.95904 1.13132 1.23090 0.91885 0.97756 0.93390 1.48516 1.17099 1.09341 1.40231 1.22287 1.04177 0.79800 0.98022 1.77242 1.20882 0.92433 1.27230 0.95316 0.90175 0.92186 0.90819 0.90371 0.95229 0.94015 0.89750 0.92339 0.92337 0.89573 0.89714 0.96069 0.92685 0.92721 0.73550 0.83429 0.76116 0.89394 0.85922 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.32 127.69 1.19 1.65 16 2 N -0.56 -13.44 5.02 -948.85 -4.76 -18.20 16 3 C 0.03 0.45 9.57 127.69 1.22 1.68 16 4 C 0.07 1.64 4.96 86.30 0.43 2.07 16 5 C -0.12 -3.57 5.46 30.59 0.17 -3.41 16 6 C 0.12 4.04 5.41 86.38 0.47 4.51 16 7 N -0.56 -24.09 2.48 -827.88 -2.05 -26.14 16 8 C 0.24 12.13 4.77 85.63 0.41 12.54 16 9 C -0.53 -28.86 8.33 25.60 0.21 -28.65 16 10 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16 11 C 0.03 1.45 5.46 84.65 0.46 1.91 16 12 N -0.92 -52.99 13.29 21.45 0.28 -52.71 16 13 Si 0.95 44.31 29.54 68.60 2.03 46.34 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 17 C 0.51 22.04 7.66 87.24 0.67 22.71 16 18 O -0.56 -23.50 16.04 -3.27 -0.05 -23.55 16 19 C 0.50 21.64 7.73 87.24 0.67 22.31 16 20 O -0.46 -22.64 9.51 -3.35 -0.03 -22.67 16 21 N -0.61 -23.13 5.43 -308.89 -1.68 -24.81 16 22 C 0.28 10.52 8.10 133.40 1.08 11.60 16 23 C -0.31 -11.07 9.60 22.11 0.21 -10.86 16 24 C 0.09 2.20 11.48 83.51 0.96 3.16 16 25 N -0.37 -9.07 4.01 -369.61 -1.48 -10.55 16 26 C 0.10 1.17 11.47 127.77 1.47 2.63 16 27 N -0.35 -11.38 12.59 -54.54 -0.69 -12.07 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 30 H 0.06 1.50 6.47 -2.39 -0.02 1.49 16 31 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 32 H 0.08 1.21 8.12 -2.38 -0.02 1.19 16 33 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 1.00 8.12 -2.39 -0.02 0.98 16 35 H 0.08 1.96 8.06 -2.38 -0.02 1.94 16 36 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.06 1.91 6.55 -2.38 -0.02 1.89 16 38 H 0.09 2.96 8.07 -2.39 -0.02 2.94 16 39 H 0.08 2.86 7.37 -2.39 -0.02 2.85 16 40 H 0.02 1.11 8.02 -2.39 -0.02 1.09 16 41 H 0.06 3.06 5.39 -2.41 -0.01 3.05 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.43 14.40 8.31 -92.71 -0.77 13.63 16 44 H 0.15 6.31 5.91 -2.91 -0.02 6.29 16 45 H 0.22 3.38 8.06 -2.91 -0.02 3.36 16 46 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 47 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -72.76 398.23 1.39 -71.37 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.20 Total: 29.14 kcal Atomic # 6 Polarization: 34.23 SS G_CDS: 9.62 Total: 43.85 kcal Atomic # 7 Polarization: -134.10 SS G_CDS: -10.37 Total: -144.47 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -0.08 Total: -46.22 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -72.76 1.39 -71.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438749967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.521 kcal (2) G-P(sol) polarization free energy of solvation -72.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds