Wall clock time and date at job start Tue Mar 31 2020 21:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00070 * 2 1 4 4 C 1.50696 * 109.47286 * 270.00255 * 3 2 1 5 5 H 1.07996 * 120.00340 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00009 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00215 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00191 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47327 * 59.99955 * 8 6 4 10 10 H 1.48499 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47312 * 299.99840 * 8 6 4 12 12 C 1.34772 * 119.99722 * 180.02562 * 2 1 3 13 13 O 1.21594 * 120.00121 * 179.97438 * 12 2 1 14 14 N 1.34779 * 120.00421 * 359.97438 * 12 2 1 15 15 C 1.40187 * 120.00418 * 180.02562 * 14 12 2 16 16 C 1.40404 * 125.97168 * 359.97438 * 15 14 12 17 17 C 1.35247 * 107.86889 * 180.02562 * 16 15 14 18 18 N 1.34965 * 107.85524 * 0.02562 * 17 16 15 19 19 C 1.46504 * 125.97389 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46883 * 124.99890 * 19 18 17 21 21 N 1.46898 * 109.47006 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99629 * 293.63553 * 21 20 19 23 23 C 1.53099 * 109.25444 * 177.60965 * 22 21 20 24 24 O 1.43020 * 109.25921 * 56.85026 * 23 22 21 25 25 C 1.43018 * 113.73692 * 301.32545 * 24 23 22 26 26 C 1.47012 * 110.99820 * 170.00535 * 21 20 19 27 27 N 1.31208 * 125.97446 * 180.30766 * 15 14 12 28 28 H 1.09002 * 109.47171 * 270.00057 * 1 2 3 29 29 H 1.09008 * 109.46992 * 29.99527 * 1 2 3 30 30 H 1.08993 * 109.47627 * 149.99623 * 1 2 3 31 31 H 1.08999 * 109.47327 * 30.00819 * 3 2 1 32 32 H 1.09000 * 109.46769 * 150.00600 * 3 2 1 33 33 H 0.97003 * 120.00684 * 180.02562 * 7 6 4 34 34 H 0.97001 * 119.99276 * 359.97438 * 14 12 2 35 35 H 1.08003 * 126.06801 * 359.97438 * 16 15 14 36 36 H 1.07997 * 126.07136 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.46891 * 5.00325 * 19 18 17 38 38 H 1.08993 * 109.47378 * 244.99697 * 19 18 17 39 39 H 1.09001 * 109.46801 * 300.00349 * 20 19 18 40 40 H 1.09001 * 109.46998 * 59.99945 * 20 19 18 41 41 H 1.09004 * 109.50787 * 297.53890 * 22 21 20 42 42 H 1.08995 * 109.50754 * 57.68018 * 22 21 20 43 43 H 1.09001 * 109.50741 * 296.91648 * 23 22 21 44 44 H 1.09003 * 109.54691 * 176.80502 * 23 22 21 45 45 H 1.08992 * 109.51039 * 298.73989 * 25 24 23 46 46 H 1.08999 * 109.54416 * 178.62484 * 25 24 23 47 47 H 1.09004 * 109.50451 * 302.32320 * 26 21 20 48 48 H 1.08994 * 109.50994 * 62.40703 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4172 -3.4338 9 1 2.1398 3.5957 -4.1331 10 1 4.1802 4.7032 -3.4337 11 1 4.2393 2.3822 -4.1347 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4649 -2.3344 -0.0005 15 6 2.1658 -3.5485 -0.0005 16 6 3.5622 -3.6947 -0.0010 17 6 3.8410 -5.0181 -0.0014 18 7 2.6692 -5.6878 -0.0017 19 6 2.5104 -7.1442 -0.0027 20 6 1.6327 -7.5623 1.1788 21 7 1.4739 -9.0227 1.1782 22 6 0.7068 -9.4686 0.0060 23 6 0.6165 -10.9969 0.0133 24 8 0.0268 -11.4288 1.2427 25 6 0.7487 -11.0124 2.4050 26 6 0.8403 -9.4842 2.4218 27 7 1.6316 -4.7469 -0.0062 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1383 0.5137 33 1 4.0311 4.4435 -0.8502 34 1 0.4949 -2.3343 0.0002 35 1 4.2855 -2.8926 -0.0019 36 1 4.8262 -5.4604 -0.0022 37 1 3.4887 -7.6164 0.0864 38 1 2.0391 -7.4577 -0.9342 39 1 2.1040 -7.2487 2.1103 40 1 0.6544 -7.0900 1.0897 41 1 -0.2967 -9.0446 0.0449 42 1 1.2074 -9.1380 -0.9040 43 1 1.6163 -11.4210 -0.0795 44 1 0.0009 -11.3299 -0.8223 45 1 1.7523 -11.4369 2.3816 46 1 0.2290 -11.3557 3.2994 47 1 1.4384 -9.1648 3.2753 48 1 -0.1606 -9.0597 2.4997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443899546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:59 Heat of formation + Delta-G solvation = 38.641387 kcal Electronic energy + Delta-G solvation = -28623.971621 eV Core-core repulsion = 24524.174775 eV Total energy + Delta-G solvation = -4099.796845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.15901 -40.02519 -39.33214 -36.70689 -35.12755 -34.49098 -32.88359 -32.27992 -31.64511 -29.93506 -29.00229 -27.75086 -26.40239 -25.68177 -24.54108 -23.40966 -22.51136 -21.38582 -20.88752 -20.31840 -19.13352 -17.52782 -17.31747 -16.70455 -16.64632 -16.52945 -16.06215 -15.72029 -15.55925 -15.39974 -14.93438 -14.79834 -14.43300 -14.37775 -13.99862 -13.67908 -13.24602 -13.02813 -13.00531 -12.77398 -12.61873 -12.46250 -12.16847 -11.98399 -11.87339 -11.83341 -11.47203 -11.19169 -11.06484 -10.91952 -10.56201 -10.52648 -10.46307 -10.15297 -10.12915 -9.65106 -9.21495 -8.96293 -8.62911 -8.42076 -8.03939 -7.59546 -6.03154 -4.07805 1.99060 2.23740 3.03412 3.10223 3.33461 3.37680 3.37765 3.41628 3.51118 4.02108 4.28407 4.39064 4.40844 4.44864 4.47406 4.52988 4.66879 4.78866 4.83768 4.92879 4.93980 5.05500 5.15676 5.20178 5.29644 5.30835 5.35334 5.45582 5.48132 5.51529 5.63978 5.86244 5.89202 6.06173 6.13830 6.34706 6.37297 6.55212 6.65115 6.76210 7.12627 7.26810 7.29925 7.48700 7.55750 7.92090 8.00406 8.23497 8.58893 8.92606 9.22157 9.57372 11.04636 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028660 B = 0.001807 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.727789 B =15491.850931 C =15701.364492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.609 5.609 3 C 0.260 3.740 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.706 3.294 13 O -0.561 6.561 14 N -0.657 5.657 15 C 0.332 3.668 16 C -0.258 4.258 17 C 0.057 3.943 18 N -0.379 5.379 19 C 0.149 3.851 20 C 0.044 3.956 21 N -0.536 5.536 22 C 0.011 3.989 23 C 0.064 3.936 24 O -0.386 6.386 25 C 0.064 3.936 26 C 0.018 3.982 27 N -0.341 5.341 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.176 0.824 36 H 0.174 0.826 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -28.057 4.891 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.345 5.345 3 C 0.141 3.859 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.407 3.593 13 O -0.436 6.436 14 N -0.310 5.310 15 C 0.075 3.925 16 C -0.289 4.289 17 C -0.087 4.087 18 N -0.164 5.164 19 C 0.027 3.973 20 C -0.084 4.084 21 N -0.262 5.262 22 C -0.117 4.117 23 C -0.013 4.013 24 O -0.305 6.305 25 C -0.013 4.013 26 C -0.110 4.110 27 N -0.172 5.172 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.242 0.758 35 H 0.194 0.806 36 H 0.191 0.809 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.117 0.883 45 H 0.079 0.921 46 H 0.117 0.883 47 H 0.106 0.894 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.942 -28.849 4.918 29.862 hybrid contribution -0.229 1.435 -1.001 1.765 sum -6.170 -27.414 3.917 28.372 Atomic orbital electron populations 1.21628 0.81537 1.02543 1.00542 1.47480 1.05811 1.06042 1.75171 1.19278 0.92429 0.76629 0.97539 1.21418 1.36609 1.06284 0.92355 0.92485 1.24918 0.95335 0.96365 0.97420 1.69917 1.38325 1.14370 1.30754 0.86554 0.78335 0.77790 0.84697 1.20317 1.21193 1.20175 1.15721 0.85388 0.79593 0.78611 1.90813 1.11222 1.85117 1.56407 1.42109 1.09625 1.01854 1.77440 1.18935 0.91235 0.85396 0.96935 1.22020 0.95132 0.96342 1.15371 1.22569 0.91406 0.92517 1.02247 1.47935 1.03338 1.04958 1.60196 1.21464 1.02140 0.74708 0.99032 1.22356 1.00181 0.86699 0.99205 1.62159 1.49764 1.11665 1.02565 1.22912 0.97335 0.96954 0.94533 1.22678 0.99081 0.92523 0.87021 1.88001 1.51971 1.76292 1.14219 1.22670 0.97286 0.92586 0.88730 1.22790 0.98567 0.96829 0.92797 1.77232 1.10832 0.95905 1.33193 0.93504 0.90123 0.93075 0.94619 0.93507 0.92651 0.75845 0.80648 0.80909 0.87930 0.90336 0.89933 0.92810 0.93462 0.89251 0.92119 0.88314 0.92113 0.88317 0.89370 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 10.20 59.85 0.61 1.90 16 2 N -0.61 -13.02 2.86 -188.74 -0.54 -13.56 16 3 C 0.26 6.75 5.16 -5.20 -0.03 6.73 16 4 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.71 15.32 8.25 -86.92 -0.72 14.61 16 13 O -0.56 -14.14 13.05 5.28 0.07 -14.07 16 14 N -0.66 -11.65 5.32 -15.51 -0.08 -11.73 16 15 C 0.33 5.87 8.11 -154.37 -1.25 4.62 16 16 C -0.26 -4.45 9.61 -39.83 -0.38 -4.84 16 17 C 0.06 0.74 11.44 -17.24 -0.20 0.54 16 18 N -0.38 -4.80 3.68 -61.38 -0.23 -5.03 16 19 C 0.15 1.28 6.44 -4.04 -0.03 1.25 16 20 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 21 N -0.54 -3.92 4.73 -234.30 -1.11 -5.03 16 22 C 0.01 0.07 5.44 -3.71 -0.02 0.05 16 23 C 0.06 0.40 7.01 37.21 0.26 0.66 16 24 O -0.39 -3.20 10.83 -35.23 -0.38 -3.58 16 25 C 0.06 0.40 7.01 37.21 0.26 0.66 16 26 C 0.02 0.12 5.64 -3.71 -0.02 0.10 16 27 N -0.34 -5.35 12.44 31.44 0.39 -4.96 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.29 8.07 -51.92 -0.42 0.87 16 30 H 0.05 0.66 6.36 -51.93 -0.33 0.33 16 31 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.40 5.98 6.55 -40.82 -0.27 5.71 16 35 H 0.18 3.46 5.91 -52.48 -0.31 3.15 16 36 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 37 H 0.10 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.08 0.63 6.52 -51.93 -0.34 0.29 16 39 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 40 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.51 6.38 -51.93 -0.33 0.18 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.09 0.51 8.09 -51.93 -0.42 0.09 16 48 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 390.10 15.07 5.88 5.88 Total: -1.00 -34.97 390.10 -9.64 -44.61 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.41 Total: 3.19 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: -1.95 Total: 13.07 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.83 Total: -65.95 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.31 Total: -17.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.97 -9.64 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443899546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.254 kcal (2) G-P(sol) polarization free energy of solvation -34.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds