Wall clock time and date at job start Tue Mar 31 2020 21:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00070 * 2 1 4 4 C 1.50696 * 109.47286 * 270.00255 * 3 2 1 5 5 H 1.07996 * 120.00340 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00009 * 180.02562 * 4 3 2 7 7 N 1.31511 * 120.00215 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00191 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47327 * 59.99955 * 8 6 4 10 10 H 1.48499 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47312 * 299.99840 * 8 6 4 12 12 C 1.34772 * 119.99722 * 180.02562 * 2 1 3 13 13 O 1.21594 * 120.00121 * 179.97438 * 12 2 1 14 14 N 1.34779 * 120.00421 * 359.97438 * 12 2 1 15 15 C 1.40187 * 120.00418 * 180.02562 * 14 12 2 16 16 C 1.40404 * 125.97168 * 359.97438 * 15 14 12 17 17 C 1.35247 * 107.86889 * 180.02562 * 16 15 14 18 18 N 1.34965 * 107.85524 * 0.02562 * 17 16 15 19 19 C 1.46504 * 125.97389 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46883 * 124.99890 * 19 18 17 21 21 N 1.46898 * 109.47006 * 180.02562 * 20 19 18 22 22 C 1.47015 * 110.99629 * 293.63553 * 21 20 19 23 23 C 1.53099 * 109.25444 * 177.60965 * 22 21 20 24 24 O 1.43020 * 109.25921 * 56.85026 * 23 22 21 25 25 C 1.43018 * 113.73692 * 301.32545 * 24 23 22 26 26 C 1.47012 * 110.99820 * 170.00535 * 21 20 19 27 27 N 1.31208 * 125.97446 * 180.30766 * 15 14 12 28 28 H 1.09002 * 109.47171 * 270.00057 * 1 2 3 29 29 H 1.09008 * 109.46992 * 29.99527 * 1 2 3 30 30 H 1.08993 * 109.47627 * 149.99623 * 1 2 3 31 31 H 1.08999 * 109.47327 * 30.00819 * 3 2 1 32 32 H 1.09000 * 109.46769 * 150.00600 * 3 2 1 33 33 H 0.97003 * 120.00684 * 180.02562 * 7 6 4 34 34 H 0.97001 * 119.99276 * 359.97438 * 14 12 2 35 35 H 1.08003 * 126.06801 * 359.97438 * 16 15 14 36 36 H 1.07997 * 126.07136 * 179.97438 * 17 16 15 37 37 H 1.09001 * 109.46891 * 5.00325 * 19 18 17 38 38 H 1.08993 * 109.47378 * 244.99697 * 19 18 17 39 39 H 1.09001 * 109.46801 * 300.00349 * 20 19 18 40 40 H 1.09001 * 109.46998 * 59.99945 * 20 19 18 41 41 H 1.09004 * 109.50787 * 297.53890 * 22 21 20 42 42 H 1.08995 * 109.50754 * 57.68018 * 22 21 20 43 43 H 1.09001 * 109.50741 * 296.91648 * 23 22 21 44 44 H 1.09003 * 109.54691 * 176.80502 * 23 22 21 45 45 H 1.08992 * 109.51039 * 298.73989 * 25 24 23 46 46 H 1.08999 * 109.54416 * 178.62484 * 25 24 23 47 47 H 1.09004 * 109.50451 * 302.32320 * 26 21 20 48 48 H 1.08994 * 109.50994 * 62.40703 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4172 -3.4338 9 1 2.1398 3.5957 -4.1331 10 1 4.1802 4.7032 -3.4337 11 1 4.2393 2.3822 -4.1347 12 6 2.1388 -1.1672 -0.0005 13 8 3.3547 -1.1673 -0.0010 14 7 1.4649 -2.3344 -0.0005 15 6 2.1658 -3.5485 -0.0005 16 6 3.5622 -3.6947 -0.0010 17 6 3.8410 -5.0181 -0.0014 18 7 2.6692 -5.6878 -0.0017 19 6 2.5104 -7.1442 -0.0027 20 6 1.6327 -7.5623 1.1788 21 7 1.4739 -9.0227 1.1782 22 6 0.7068 -9.4686 0.0060 23 6 0.6165 -10.9969 0.0133 24 8 0.0268 -11.4288 1.2427 25 6 0.7487 -11.0124 2.4050 26 6 0.8403 -9.4842 2.4218 27 7 1.6316 -4.7469 -0.0062 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6085 2.0284 0.5139 32 1 3.1499 1.1383 0.5137 33 1 4.0311 4.4435 -0.8502 34 1 0.4949 -2.3343 0.0002 35 1 4.2855 -2.8926 -0.0019 36 1 4.8262 -5.4604 -0.0022 37 1 3.4887 -7.6164 0.0864 38 1 2.0391 -7.4577 -0.9342 39 1 2.1040 -7.2487 2.1103 40 1 0.6544 -7.0900 1.0897 41 1 -0.2967 -9.0446 0.0449 42 1 1.2074 -9.1380 -0.9040 43 1 1.6163 -11.4210 -0.0795 44 1 0.0009 -11.3299 -0.8223 45 1 1.7523 -11.4369 2.3816 46 1 0.2290 -11.3557 3.2994 47 1 1.4384 -9.1648 3.2753 48 1 -0.1606 -9.0597 2.4997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443899546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:58 Heat of formation + Delta-G solvation = 13.280474 kcal Electronic energy + Delta-G solvation = -28625.071352 eV Core-core repulsion = 24524.174775 eV Total energy + Delta-G solvation = -4100.896577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36982 -40.97144 -40.51795 -37.40517 -36.75582 -35.98681 -34.69148 -33.52608 -32.16352 -31.12332 -30.02452 -29.49138 -27.54733 -26.88938 -25.19222 -25.05264 -23.47975 -22.69187 -21.65328 -21.31380 -20.62454 -18.92962 -18.64753 -18.36683 -17.67441 -17.27767 -17.04715 -16.78027 -16.57784 -16.41817 -16.07808 -15.93753 -15.79930 -15.28356 -15.15332 -14.83288 -14.58690 -14.29311 -14.13422 -13.93841 -13.86661 -13.48196 -13.45599 -13.14808 -13.12415 -12.79485 -12.62856 -12.52083 -12.37109 -12.23769 -12.15355 -11.79126 -11.72427 -11.67560 -11.45459 -10.95100 -10.70612 -10.61099 -9.86762 -9.59263 -9.55896 -9.06404 -8.19267 -6.33692 0.84347 1.08497 1.38859 1.42805 1.50166 1.67565 1.90624 2.37317 2.46894 2.70037 2.94889 3.03845 3.10775 3.61461 3.72561 3.90608 3.93699 4.01346 4.17852 4.20078 4.26939 4.27469 4.32401 4.36848 4.53221 4.58820 4.64216 4.69860 4.75277 4.79094 4.81638 4.85261 4.89561 4.89946 4.98188 5.00289 5.22065 5.24208 5.57132 5.70642 5.73737 5.80468 5.87274 5.95114 6.08075 6.16895 6.18743 6.63432 6.74034 7.07871 7.32457 7.58308 8.87040 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.028660 B = 0.001807 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.727789 B =15491.850931 C =15701.364492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.616 5.616 3 C 0.276 3.724 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.262 1.262 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.703 3.297 13 O -0.605 6.605 14 N -0.642 5.642 15 C 0.305 3.695 16 C -0.305 4.305 17 C 0.090 3.910 18 N -0.366 5.366 19 C 0.143 3.857 20 C 0.053 3.947 21 N -0.531 5.531 22 C 0.010 3.990 23 C 0.063 3.937 24 O -0.409 6.409 25 C 0.064 3.936 26 C 0.017 3.983 27 N -0.346 5.346 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.005 0.995 33 H 0.267 0.733 34 H 0.419 0.581 35 H 0.144 0.856 36 H 0.221 0.779 37 H 0.136 0.864 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.112 0.888 47 H 0.098 0.902 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.526 -30.471 3.935 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C 0.155 3.845 4 C -0.582 4.582 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.403 3.597 13 O -0.483 6.483 14 N -0.296 5.296 15 C 0.049 3.951 16 C -0.336 4.336 17 C -0.057 4.057 18 N -0.150 5.150 19 C 0.023 3.977 20 C -0.076 4.076 21 N -0.256 5.256 22 C -0.118 4.118 23 C -0.014 4.014 24 O -0.328 6.328 25 C -0.013 4.013 26 C -0.111 4.111 27 N -0.177 5.177 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.051 0.949 32 H 0.023 0.977 33 H 0.076 0.924 34 H 0.258 0.742 35 H 0.161 0.839 36 H 0.237 0.763 37 H 0.154 0.846 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.130 0.870 47 H 0.117 0.883 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -6.397 -31.321 3.969 32.213 hybrid contribution -0.124 1.998 -0.643 2.103 sum -6.520 -29.322 3.326 30.222 Atomic orbital electron populations 1.21918 0.77985 1.03925 1.02756 1.47342 1.07955 1.04608 1.75240 1.18758 0.91108 0.78540 0.96103 1.21671 1.36970 1.06533 0.93073 0.93079 1.25800 0.94907 0.96395 1.01811 1.70030 1.38798 1.14778 1.32915 0.85497 0.78745 0.77329 0.79390 1.18669 1.20250 1.20503 1.15827 0.84977 0.80495 0.78352 1.90794 1.13314 1.85978 1.58211 1.41689 1.10081 1.01046 1.76809 1.19111 0.91608 0.85634 0.98721 1.21880 0.94704 0.97720 1.19284 1.23056 0.93067 0.90987 0.98563 1.48314 1.02690 1.06117 1.57923 1.21863 1.04206 0.72111 0.99537 1.22194 0.98924 0.87416 0.99030 1.62208 1.49844 1.10555 1.03043 1.22965 0.96613 0.97390 0.94793 1.22800 0.99773 0.92015 0.86820 1.87974 1.52943 1.76643 1.15228 1.22782 0.97755 0.92018 0.88725 1.22847 0.98015 0.97301 0.92944 1.77181 1.12072 0.95518 1.32963 0.90820 0.90341 0.90091 0.94926 0.97732 0.92366 0.74227 0.83865 0.76252 0.84610 0.89183 0.90247 0.95068 0.94980 0.87932 0.91259 0.87103 0.91377 0.87021 0.88345 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 10.20 127.77 1.30 3.64 16 2 N -0.62 -26.97 2.86 -869.32 -2.48 -29.45 16 3 C 0.28 14.93 5.16 85.63 0.44 15.38 16 4 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.58 5.46 84.65 0.46 1.05 16 7 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 8 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 C 0.70 31.59 8.25 179.05 1.48 33.06 16 13 O -0.60 -32.32 13.05 -4.01 -0.05 -32.38 16 14 N -0.64 -23.03 5.32 -321.23 -1.71 -24.74 16 15 C 0.31 10.83 8.11 133.32 1.08 11.91 16 16 C -0.30 -10.68 9.61 22.11 0.21 -10.47 16 17 C 0.09 2.14 11.44 83.52 0.96 3.09 16 18 N -0.37 -8.40 3.68 -348.09 -1.28 -9.68 16 19 C 0.14 1.97 6.44 86.38 0.56 2.53 16 20 C 0.05 0.79 5.14 86.31 0.44 1.24 16 21 N -0.53 -6.61 4.73 -895.19 -4.23 -10.84 16 22 C 0.01 0.12 5.44 86.31 0.47 0.59 16 23 C 0.06 0.66 7.01 72.02 0.50 1.16 16 24 O -0.41 -6.13 10.83 -148.98 -1.61 -7.74 16 25 C 0.06 0.68 7.01 72.02 0.50 1.18 16 26 C 0.02 0.20 5.64 86.32 0.49 0.69 16 27 N -0.35 -10.50 12.44 -54.44 -0.68 -11.18 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 2.45 8.07 -2.38 -0.02 2.43 16 30 H 0.08 1.97 6.36 -2.39 -0.02 1.96 16 31 H 0.03 1.76 8.07 -2.39 -0.02 1.74 16 32 H 0.00 0.28 7.42 -2.39 -0.02 0.26 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.42 12.08 6.55 -92.71 -0.61 11.47 16 35 H 0.14 6.02 5.91 -2.91 -0.02 6.00 16 36 H 0.22 2.98 8.06 -2.91 -0.02 2.95 16 37 H 0.14 1.09 8.07 -2.39 -0.02 1.07 16 38 H 0.09 1.13 6.52 -2.39 -0.02 1.11 16 39 H 0.08 1.25 8.04 -2.39 -0.02 1.23 16 40 H 0.03 0.61 8.12 -2.39 -0.02 0.59 16 41 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.10 0.89 6.38 -2.39 -0.02 0.87 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.10 0.95 8.09 -2.38 -0.02 0.93 16 48 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -79.70 390.10 -0.23 -79.93 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.36 Total: 20.53 kcal Atomic # 6 Polarization: 24.67 SS G_CDS: 9.14 Total: 33.81 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -10.09 Total: -141.30 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.67 Total: -40.12 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -79.70 -0.23 -79.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443899546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.214 kcal (2) G-P(sol) polarization free energy of solvation -79.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds