Wall clock time and date at job start Tue Mar 31 2020 21:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 120.00125 * 2 1 4 4 C 1.50700 * 109.47157 * 270.00565 * 3 2 1 5 5 H 1.07990 * 120.00114 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99691 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99956 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00080 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46921 * 90.00574 * 8 6 4 10 10 H 1.48504 * 109.47302 * 210.00150 * 8 6 4 11 11 H 1.48498 * 109.47621 * 330.00743 * 8 6 4 12 12 C 1.34777 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.21603 * 119.99752 * 180.02562 * 12 2 1 14 14 N 1.34776 * 120.00058 * 359.97438 * 12 2 1 15 15 C 1.40841 * 119.99987 * 180.02562 * 14 12 2 16 16 C 1.40242 * 126.07412 * 0.02742 * 15 14 12 17 17 N 1.30844 * 108.33961 * 179.97438 * 16 15 14 18 18 N 1.40071 * 108.36410 * 0.02562 * 17 16 15 19 19 C 1.46501 * 126.05461 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.47385 * 304.97487 * 19 18 17 21 21 N 1.46897 * 109.46828 * 180.02562 * 20 19 18 22 22 C 1.47019 * 111.00036 * 293.63035 * 21 20 19 23 23 C 1.53092 * 109.25777 * 177.60907 * 22 21 20 24 24 O 1.43020 * 109.25636 * 56.85439 * 23 22 21 25 25 C 1.43020 * 113.73596 * 301.32372 * 24 23 22 26 26 C 1.47019 * 110.99799 * 170.00192 * 21 20 19 27 27 C 1.35731 * 126.07736 * 180.02562 * 15 14 12 28 28 H 1.09003 * 109.46735 * 269.99704 * 1 2 3 29 29 H 1.09003 * 109.46864 * 29.99610 * 1 2 3 30 30 H 1.08996 * 109.47115 * 149.99620 * 1 2 3 31 31 H 1.08999 * 109.46643 * 30.00531 * 3 2 1 32 32 H 1.08996 * 109.47088 * 150.00216 * 3 2 1 33 33 H 0.96996 * 120.00576 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99933 * 0.02562 * 14 12 2 35 35 H 1.07997 * 125.82939 * 0.24658 * 16 15 14 36 36 H 1.09006 * 109.46980 * 64.97764 * 19 18 17 37 37 H 1.09005 * 109.46875 * 184.97255 * 19 18 17 38 38 H 1.08997 * 109.47015 * 300.00110 * 20 19 18 39 39 H 1.08996 * 109.46822 * 60.00337 * 20 19 18 40 40 H 1.08993 * 109.50718 * 297.54707 * 22 21 20 41 41 H 1.09000 * 109.50261 * 57.67796 * 22 21 20 42 42 H 1.08998 * 109.51244 * 296.91690 * 23 22 21 43 43 H 1.09000 * 109.54130 * 176.80705 * 23 22 21 44 44 H 1.08993 * 109.50948 * 298.73909 * 25 24 23 45 45 H 1.08993 * 109.53905 * 178.62788 * 25 24 23 46 46 H 1.09000 * 109.50374 * 302.32432 * 26 21 20 47 47 H 1.08995 * 109.50378 * 62.40866 * 26 21 20 48 48 H 1.07994 * 126.21706 * 0.04173 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1072 3.5067 0.1236 10 1 3.7499 5.3554 -0.6645 11 1 2.8276 3.7594 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1673 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1691 -3.5542 -0.0005 16 6 3.5637 -3.7026 0.0000 17 7 3.8416 -4.9812 0.0004 18 7 2.6363 -5.6948 -0.0005 19 6 2.4977 -7.1532 0.0001 20 6 3.2738 -7.7398 -1.1808 21 7 3.1343 -9.2021 -1.1805 22 6 3.7946 -9.7941 -0.0079 23 6 3.5742 -11.3091 -0.0156 24 8 4.0656 -11.8510 -1.2446 25 6 3.4436 -11.2972 -2.4073 26 6 3.6627 -9.7821 -2.4238 27 6 1.6187 -4.7948 -0.0010 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.8233 4.0829 -3.0898 34 1 0.4950 -2.3343 -0.0005 35 1 4.2850 -2.8989 0.0043 36 1 2.8951 -7.5556 0.9320 37 1 1.4441 -7.4181 -0.0900 38 1 2.8764 -7.3375 -2.1126 39 1 4.3273 -7.4750 -1.0907 40 1 4.8629 -9.5815 -0.0458 41 1 3.3703 -9.3692 0.9018 42 1 2.5093 -11.5226 0.0764 43 1 4.1092 -11.7596 0.8205 44 1 2.3749 -11.5102 -2.3849 45 1 3.8840 -11.7383 -3.3014 46 1 3.1421 -9.3483 -3.2777 47 1 4.7287 -9.5685 -2.5007 48 1 0.5635 -5.0248 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000443899671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:03 Heat of formation + Delta-G solvation = 39.243139 kcal Electronic energy + Delta-G solvation = -28573.560194 eV Core-core repulsion = 24473.789443 eV Total energy + Delta-G solvation = -4099.770751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19070 -40.01756 -39.32791 -36.70347 -35.16158 -34.40773 -33.08931 -32.38040 -31.66536 -29.99065 -28.95898 -27.97913 -26.44559 -25.73031 -24.53128 -23.05680 -22.75413 -21.12185 -20.91874 -20.59280 -19.07549 -17.56701 -17.35495 -16.94410 -16.80899 -16.57673 -16.05531 -15.64752 -15.53094 -15.43599 -15.02154 -14.68259 -14.59483 -14.25864 -13.82709 -13.78144 -13.60390 -13.15156 -12.95000 -12.69656 -12.65455 -12.50735 -12.40007 -12.06415 -12.02454 -11.85547 -11.50239 -11.44872 -11.04898 -10.96105 -10.61528 -10.52800 -10.42617 -10.16836 -10.10627 -9.54714 -9.31520 -9.26669 -8.94037 -8.56991 -7.87852 -7.34328 -6.06670 -4.05349 1.88564 2.33068 2.97204 3.19295 3.30860 3.32795 3.37521 3.39712 3.44413 3.97561 4.28159 4.37921 4.41148 4.43962 4.47962 4.48626 4.68047 4.79307 4.84343 4.84764 4.92143 5.05484 5.15154 5.18063 5.25789 5.31188 5.36223 5.37393 5.45120 5.46904 5.51487 5.72608 5.77450 5.81554 6.07882 6.34869 6.38041 6.50932 6.57339 6.66135 6.88318 7.01463 7.20519 7.26889 7.48797 7.63625 7.84938 8.49215 8.50528 8.96854 9.19036 9.53580 11.06786 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.001811 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.824350 B =15457.226049 C =15786.138904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.609 5.609 3 C 0.231 3.769 4 C -0.529 4.529 5 H 0.074 0.926 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.705 3.295 13 O -0.573 6.573 14 N -0.669 5.669 15 C 0.043 3.957 16 C 0.057 3.943 17 N -0.290 5.290 18 N -0.381 5.381 19 C 0.151 3.849 20 C 0.043 3.957 21 N -0.535 5.535 22 C 0.010 3.990 23 C 0.064 3.936 24 O -0.386 6.386 25 C 0.065 3.935 26 C 0.018 3.982 27 C -0.003 4.003 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.039 0.961 33 H 0.264 0.736 34 H 0.401 0.599 35 H 0.210 0.790 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.046 0.954 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -27.703 6.375 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.344 5.344 3 C 0.110 3.890 4 C -0.568 4.568 5 H 0.092 0.908 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.191 1.191 12 C 0.407 3.593 13 O -0.450 6.450 14 N -0.319 5.319 15 C -0.063 4.063 16 C -0.131 4.131 17 N -0.112 5.112 18 N -0.168 5.168 19 C 0.029 3.971 20 C -0.086 4.086 21 N -0.261 5.261 22 C -0.118 4.118 23 C -0.013 4.013 24 O -0.305 6.305 25 C -0.013 4.013 26 C -0.110 4.110 27 C -0.149 4.149 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -5.759 -28.693 6.287 29.932 hybrid contribution -0.361 1.807 0.416 1.889 sum -6.120 -26.886 6.702 28.376 Atomic orbital electron populations 1.21614 0.81206 1.02816 1.00386 1.47075 1.05757 1.05661 1.75893 1.19608 0.92290 0.78762 0.98324 1.21358 1.36938 1.07083 0.91376 0.90780 1.24856 0.95263 0.97375 0.95579 1.69895 1.41495 1.23560 1.18671 0.86846 0.80192 0.79703 0.82883 1.19862 1.21141 1.19061 1.15740 0.85334 0.79861 0.78371 1.90760 1.11537 1.85380 1.57318 1.42181 1.08935 1.02467 1.78288 1.17555 0.91988 0.84887 1.11872 1.24668 0.95341 0.93827 0.99228 1.77333 1.04829 1.04892 1.24125 1.48133 1.03629 1.05287 1.59753 1.21434 1.02193 0.74416 0.99077 1.22367 1.00398 0.86623 0.99207 1.62163 1.56825 1.04544 1.02593 1.22914 0.98151 0.96211 0.94498 1.22671 0.99796 0.91758 0.87060 1.88003 1.64147 1.64115 1.14209 1.22670 0.98302 0.91566 0.88716 1.22796 0.99229 0.96226 0.92776 1.21669 0.94543 0.88116 1.10620 0.93582 0.90113 0.92832 0.95051 0.94303 0.92586 0.76297 0.77412 0.90247 0.88103 0.89843 0.92695 0.93409 0.89293 0.92149 0.88330 0.92124 0.88288 0.89320 0.93532 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.22 10.20 59.85 0.61 1.83 16 2 N -0.61 -12.37 2.86 -188.73 -0.54 -12.91 16 3 C 0.23 5.59 4.23 -5.19 -0.02 5.57 16 4 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 5 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 7 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 8 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 12 C 0.71 14.56 8.25 -86.92 -0.72 13.85 16 13 O -0.57 -14.00 13.08 5.27 0.07 -13.93 16 14 N -0.67 -10.53 5.34 -14.39 -0.08 -10.61 16 15 C 0.04 0.67 6.90 -83.86 -0.58 0.09 16 16 C 0.06 1.01 10.84 -17.22 -0.19 0.82 16 17 N -0.29 -4.61 12.41 30.70 0.38 -4.22 16 18 N -0.38 -4.66 3.70 -61.02 -0.23 -4.89 16 19 C 0.15 1.26 6.45 -4.04 -0.03 1.24 16 20 C 0.04 0.37 5.14 -3.82 -0.02 0.35 16 21 N -0.54 -3.99 4.73 -234.31 -1.11 -5.10 16 22 C 0.01 0.07 5.44 -3.71 -0.02 0.05 16 23 C 0.06 0.40 7.01 37.21 0.26 0.66 16 24 O -0.39 -3.25 10.83 -35.23 -0.38 -3.63 16 25 C 0.06 0.41 7.01 37.21 0.26 0.67 16 26 C 0.02 0.13 5.64 -3.71 -0.02 0.10 16 27 C 0.00 -0.03 11.52 -16.67 -0.19 -0.23 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 30 H 0.05 0.62 6.36 -51.93 -0.33 0.29 16 31 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 32 H 0.04 1.00 6.85 -51.93 -0.36 0.65 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.40 4.81 6.56 -40.82 -0.27 4.54 16 35 H 0.21 4.14 5.91 -52.49 -0.31 3.83 16 36 H 0.08 0.61 6.52 -51.93 -0.34 0.27 16 37 H 0.10 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 39 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 40 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.50 6.38 -51.93 -0.33 0.16 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 47 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 386.68 15.07 5.83 5.83 Total: -1.00 -36.36 386.68 -8.41 -44.77 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.37 Total: 3.30 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -1.09 Total: 11.51 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: -0.80 Total: -64.66 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.31 Total: -17.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.36 -8.41 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443899671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.016 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds