Wall clock time and date at job start Tue Mar 31 2020 21:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 120.00125 * 2 1 4 4 C 1.50700 * 109.47157 * 270.00565 * 3 2 1 5 5 H 1.07990 * 120.00114 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99691 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99956 * 179.97438 * 6 4 3 8 8 Si 1.86795 * 120.00080 * 359.97438 * 6 4 3 9 9 H 1.48509 * 109.46921 * 90.00574 * 8 6 4 10 10 H 1.48504 * 109.47302 * 210.00150 * 8 6 4 11 11 H 1.48498 * 109.47621 * 330.00743 * 8 6 4 12 12 C 1.34777 * 119.99690 * 180.02562 * 2 1 3 13 13 O 1.21603 * 119.99752 * 180.02562 * 12 2 1 14 14 N 1.34776 * 120.00058 * 359.97438 * 12 2 1 15 15 C 1.40841 * 119.99987 * 180.02562 * 14 12 2 16 16 C 1.40242 * 126.07412 * 0.02742 * 15 14 12 17 17 N 1.30844 * 108.33961 * 179.97438 * 16 15 14 18 18 N 1.40071 * 108.36410 * 0.02562 * 17 16 15 19 19 C 1.46501 * 126.05461 * 180.02562 * 18 17 16 20 20 C 1.53002 * 109.47385 * 304.97487 * 19 18 17 21 21 N 1.46897 * 109.46828 * 180.02562 * 20 19 18 22 22 C 1.47019 * 111.00036 * 293.63035 * 21 20 19 23 23 C 1.53092 * 109.25777 * 177.60907 * 22 21 20 24 24 O 1.43020 * 109.25636 * 56.85439 * 23 22 21 25 25 C 1.43020 * 113.73596 * 301.32372 * 24 23 22 26 26 C 1.47019 * 110.99799 * 170.00192 * 21 20 19 27 27 C 1.35731 * 126.07736 * 180.02562 * 15 14 12 28 28 H 1.09003 * 109.46735 * 269.99704 * 1 2 3 29 29 H 1.09003 * 109.46864 * 29.99610 * 1 2 3 30 30 H 1.08996 * 109.47115 * 149.99620 * 1 2 3 31 31 H 1.08999 * 109.46643 * 30.00531 * 3 2 1 32 32 H 1.08996 * 109.47088 * 150.00216 * 3 2 1 33 33 H 0.96996 * 120.00576 * 179.97438 * 7 6 4 34 34 H 0.96998 * 119.99933 * 0.02562 * 14 12 2 35 35 H 1.07997 * 125.82939 * 0.24658 * 16 15 14 36 36 H 1.09006 * 109.46980 * 64.97764 * 19 18 17 37 37 H 1.09005 * 109.46875 * 184.97255 * 19 18 17 38 38 H 1.08997 * 109.47015 * 300.00110 * 20 19 18 39 39 H 1.08996 * 109.46822 * 60.00337 * 20 19 18 40 40 H 1.08993 * 109.50718 * 297.54707 * 22 21 20 41 41 H 1.09000 * 109.50261 * 57.67796 * 22 21 20 42 42 H 1.08998 * 109.51244 * 296.91690 * 23 22 21 43 43 H 1.09000 * 109.54130 * 176.80705 * 23 22 21 44 44 H 1.08993 * 109.50948 * 298.73909 * 25 24 23 45 45 H 1.08993 * 109.53905 * 178.62788 * 25 24 23 46 46 H 1.09000 * 109.50374 * 302.32432 * 26 21 20 47 47 H 1.08995 * 109.50378 * 62.40866 * 26 21 20 48 48 H 1.07994 * 126.21706 * 0.04173 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.3465 3.2570 -2.9125 8 14 3.7340 3.9286 -0.2528 9 1 5.1072 3.5067 0.1236 10 1 3.7499 5.3554 -0.6645 11 1 2.8276 3.7594 0.9113 12 6 2.1389 -1.1672 -0.0005 13 8 3.3549 -1.1673 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1691 -3.5542 -0.0005 16 6 3.5637 -3.7026 0.0000 17 7 3.8416 -4.9812 0.0004 18 7 2.6363 -5.6948 -0.0005 19 6 2.4977 -7.1532 0.0001 20 6 3.2738 -7.7398 -1.1808 21 7 3.1343 -9.2021 -1.1805 22 6 3.7946 -9.7941 -0.0079 23 6 3.5742 -11.3091 -0.0156 24 8 4.0656 -11.8510 -1.2446 25 6 3.4436 -11.2972 -2.4073 26 6 3.6627 -9.7821 -2.4238 27 6 1.6187 -4.7948 -0.0010 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 3.8233 4.0829 -3.0898 34 1 0.4950 -2.3343 -0.0005 35 1 4.2850 -2.8989 0.0043 36 1 2.8951 -7.5556 0.9320 37 1 1.4441 -7.4181 -0.0900 38 1 2.8764 -7.3375 -2.1126 39 1 4.3273 -7.4750 -1.0907 40 1 4.8629 -9.5815 -0.0458 41 1 3.3703 -9.3692 0.9018 42 1 2.5093 -11.5226 0.0764 43 1 4.1092 -11.7596 0.8205 44 1 2.3749 -11.5102 -2.3849 45 1 3.8840 -11.7383 -3.3014 46 1 3.1421 -9.3483 -3.2777 47 1 4.7287 -9.5685 -2.5007 48 1 0.5635 -5.0248 -0.0021 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443899671.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:02 Heat of formation + Delta-G solvation = 10.186639 kcal Electronic energy + Delta-G solvation = -28574.820179 eV Core-core repulsion = 24473.789443 eV Total energy + Delta-G solvation = -4101.030736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.33594 -40.86852 -40.51716 -37.38991 -36.71476 -35.80315 -34.63115 -33.90590 -32.19211 -31.06165 -30.44939 -29.23351 -27.46087 -26.91985 -25.06477 -24.60113 -23.89958 -22.20268 -22.00056 -21.37736 -20.44181 -19.11132 -18.85834 -18.39441 -17.65565 -17.16105 -17.08792 -16.74976 -16.45160 -16.23570 -16.11370 -15.97838 -15.59435 -15.56776 -15.10821 -14.89042 -14.63318 -14.45710 -14.23781 -13.99866 -13.76881 -13.62481 -13.47071 -13.22964 -13.15047 -12.78289 -12.67675 -12.40497 -12.37072 -12.16848 -12.01139 -11.74576 -11.71179 -11.68605 -11.48517 -10.98939 -10.79624 -10.74190 -10.32202 -9.59207 -9.47906 -8.56317 -8.30646 -6.35337 0.83016 1.34147 1.38157 1.40655 1.48455 1.65306 1.88372 2.34194 2.49943 2.67612 2.94607 3.03766 3.15688 3.61248 3.72378 3.89623 3.92274 3.98615 4.15000 4.17015 4.24845 4.30063 4.33159 4.33926 4.47377 4.53388 4.57226 4.68379 4.68929 4.76520 4.80281 4.82787 4.83300 4.88956 4.94718 4.98244 4.99557 5.23632 5.49065 5.62139 5.70092 5.78462 5.87081 6.03178 6.15608 6.16993 6.30838 6.66001 6.67547 7.12305 7.26560 7.69360 8.86431 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026413 B = 0.001811 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.824350 B =15457.226049 C =15786.138904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.240 3.760 4 C -0.534 4.534 5 H 0.026 0.974 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.276 1.276 11 H -0.234 1.234 12 C 0.695 3.305 13 O -0.624 6.624 14 N -0.646 5.646 15 C 0.002 3.998 16 C 0.026 3.974 17 N -0.314 5.314 18 N -0.369 5.369 19 C 0.146 3.854 20 C 0.050 3.950 21 N -0.528 5.528 22 C 0.009 3.991 23 C 0.063 3.937 24 O -0.409 6.409 25 C 0.065 3.935 26 C 0.016 3.984 27 C 0.041 3.959 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.020 0.980 33 H 0.267 0.733 34 H 0.421 0.579 35 H 0.173 0.827 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.029 0.971 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.098 0.902 47 H 0.030 0.970 48 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.364 -29.605 8.436 32.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.353 5.353 3 C 0.118 3.882 4 C -0.573 4.573 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.157 1.157 12 C 0.396 3.604 13 O -0.504 6.504 14 N -0.297 5.297 15 C -0.103 4.103 16 C -0.160 4.160 17 N -0.137 5.137 18 N -0.155 5.155 19 C 0.025 3.975 20 C -0.079 4.079 21 N -0.253 5.253 22 C -0.119 4.119 23 C -0.014 4.014 24 O -0.328 6.328 25 C -0.012 4.012 26 C -0.113 4.113 27 C -0.107 4.107 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.261 0.739 35 H 0.190 0.810 36 H 0.110 0.890 37 H 0.157 0.843 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.123 0.877 42 H 0.090 0.910 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.129 0.871 46 H 0.116 0.884 47 H 0.048 0.952 48 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -8.938 -30.665 8.359 33.016 hybrid contribution 0.569 2.149 -0.318 2.246 sum -8.369 -28.516 8.041 30.787 Atomic orbital electron populations 1.21944 0.77594 1.03969 1.03021 1.47043 1.07988 1.04330 1.75959 1.19267 0.92640 0.81203 0.95135 1.21604 1.36575 1.06520 0.92580 0.95536 1.25873 0.95372 0.99058 0.98650 1.70056 1.42866 1.24494 1.21368 0.85696 0.79566 0.77595 0.79934 1.20450 1.20166 1.15654 1.16013 0.84964 0.81090 0.78296 1.90745 1.13978 1.86320 1.59386 1.41731 1.09635 1.01092 1.77291 1.17758 0.91311 0.85979 1.15244 1.24255 0.96355 0.93903 1.01501 1.77279 1.06849 1.04441 1.25160 1.48562 1.02790 1.06801 1.57309 1.21828 1.04454 0.71866 0.99312 1.22219 0.98771 0.87628 0.99262 1.62230 1.56550 1.03556 1.03001 1.22983 0.97150 0.96894 0.94830 1.22807 1.00630 0.91138 0.86799 1.87975 1.64939 1.64676 1.15253 1.22770 0.98877 0.90818 0.88713 1.22858 0.98360 0.96995 0.93038 1.22418 0.96446 0.86112 1.05711 0.90008 0.91002 0.89794 0.92552 0.96161 0.92375 0.73868 0.81041 0.89040 0.84302 0.90338 0.95528 0.95247 0.87681 0.91035 0.87066 0.91165 0.87113 0.88386 0.95181 0.75505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.04 10.20 127.77 1.30 3.34 16 2 N -0.62 -24.89 2.86 -869.28 -2.48 -27.38 16 3 C 0.24 11.66 4.23 85.63 0.36 12.02 16 4 C -0.53 -31.62 9.94 25.60 0.25 -31.36 16 5 H 0.03 1.76 8.06 -2.92 -0.02 1.74 16 6 C 0.01 0.48 5.47 84.66 0.46 0.94 16 7 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 8 Si 0.95 44.67 27.47 68.60 1.88 46.55 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.23 -9.70 6.54 99.48 0.65 -9.05 16 12 C 0.69 29.09 8.25 179.05 1.48 30.57 16 13 O -0.62 -32.22 13.08 -4.04 -0.05 -32.27 16 14 N -0.65 -19.48 5.34 -317.70 -1.70 -21.18 16 15 C 0.00 0.06 6.90 37.60 0.26 0.32 16 16 C 0.03 0.96 10.84 85.33 0.92 1.89 16 17 N -0.31 -10.10 12.41 -56.77 -0.70 -10.81 16 18 N -0.37 -8.10 3.70 -346.97 -1.29 -9.39 16 19 C 0.15 1.93 6.45 86.38 0.56 2.49 16 20 C 0.05 0.79 5.14 86.30 0.44 1.24 16 21 N -0.53 -6.88 4.73 -895.24 -4.23 -11.11 16 22 C 0.01 0.11 5.44 86.31 0.47 0.58 16 23 C 0.06 0.67 7.01 72.01 0.50 1.17 16 24 O -0.41 -6.35 10.83 -148.98 -1.61 -7.96 16 25 C 0.06 0.73 7.01 72.01 0.50 1.24 16 26 C 0.02 0.20 5.64 86.31 0.49 0.69 16 27 C 0.04 0.82 11.52 83.49 0.96 1.78 16 28 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.08 1.68 6.36 -2.39 -0.02 1.66 16 31 H 0.06 2.46 7.13 -2.39 -0.02 2.44 16 32 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 33 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 34 H 0.42 8.71 6.56 -92.71 -0.61 8.10 16 35 H 0.17 7.58 5.91 -2.91 -0.02 7.57 16 36 H 0.09 1.08 6.52 -2.38 -0.02 1.07 16 37 H 0.14 0.91 8.07 -2.38 -0.02 0.90 16 38 H 0.08 1.33 8.04 -2.39 -0.02 1.31 16 39 H 0.03 0.58 8.12 -2.39 -0.02 0.56 16 40 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.11 0.89 6.38 -2.39 -0.02 0.87 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 47 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.23 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -86.90 386.68 -0.60 -87.51 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.31 Total: 19.40 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 8.97 Total: 26.91 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -10.10 Total: -140.14 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.67 Total: -40.23 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.55 kcal Total: -86.90 -0.60 -87.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443899671.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.692 kcal (2) G-P(sol) polarization free energy of solvation -86.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds