Wall clock time and date at job start Tue Mar 31 2020 20:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47074 * 2 1 4 4 C 1.46894 * 110.99918 * 293.94815 * 3 2 1 5 5 C 1.46903 * 110.99699 * 169.99754 * 3 2 1 6 6 C 1.53000 * 109.46908 * 190.00188 * 5 3 2 7 7 N 1.46500 * 109.47420 * 180.02562 * 6 5 3 8 8 C 1.34773 * 120.00522 * 179.97438 * 7 6 5 9 9 O 1.21368 * 119.99994 * 359.97438 * 8 7 6 10 10 C 1.49304 * 120.00278 * 180.02562 * 8 7 6 11 11 O 1.21392 * 119.99967 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00068 * 180.02562 * 10 8 7 13 13 C 1.39199 * 120.00053 * 179.97438 * 12 10 8 14 14 C 1.36219 * 126.27080 * 0.17906 * 13 12 10 15 15 C 1.39696 * 107.85485 * 180.26645 * 14 13 12 16 16 C 1.50701 * 125.76897 * 179.71308 * 15 14 13 17 17 N 1.30848 * 108.46002 * 359.73545 * 15 14 13 18 18 N 1.35860 * 126.27188 * 179.97438 * 13 12 10 19 19 C 1.46491 * 126.09683 * 359.97438 * 18 13 12 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 13 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 H 1.09000 * 109.47533 * 300.00148 * 1 2 3 29 29 H 1.08999 * 109.46832 * 60.00269 * 1 2 3 30 30 H 1.09007 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47533 * 239.99852 * 2 1 3 32 32 H 1.09008 * 109.46745 * 119.99941 * 2 1 3 33 33 H 1.09000 * 109.47589 * 296.04864 * 4 3 2 34 34 H 1.09003 * 109.47247 * 56.05269 * 4 3 2 35 35 H 1.09002 * 109.46873 * 176.04389 * 4 3 2 36 36 H 1.08999 * 109.47461 * 70.00187 * 5 3 2 37 37 H 1.09001 * 109.47228 * 309.99376 * 5 3 2 38 38 H 1.08996 * 109.47787 * 59.99742 * 6 5 3 39 39 H 1.09006 * 109.47380 * 299.99681 * 6 5 3 40 40 H 0.97008 * 119.99878 * 359.97438 * 7 6 5 41 41 H 0.96999 * 120.00308 * 359.97438 * 12 10 8 42 42 H 1.07999 * 126.07160 * 0.02562 * 14 13 12 43 43 H 1.08998 * 109.47246 * 270.00352 * 16 15 14 44 44 H 1.09002 * 109.47095 * 30.00331 * 16 15 14 45 45 H 1.09001 * 109.46834 * 149.99902 * 16 15 14 46 46 H 1.09004 * 109.47166 * 149.71460 * 19 18 13 47 47 H 1.08994 * 109.47507 * 29.71166 * 19 18 13 48 48 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0668 -1.2533 5 6 3.4685 1.4310 0.2382 6 6 3.8998 2.8791 0.4792 7 7 5.3448 2.9252 0.7162 8 6 5.9516 4.1051 0.9529 9 8 5.3010 5.1295 0.9694 10 6 7.4243 4.1521 1.1939 11 8 8.0751 3.1276 1.1770 12 7 8.0310 5.3320 1.4311 13 6 9.4040 5.3758 1.6563 14 6 10.2539 4.3113 1.6626 15 6 11.5381 4.7902 1.9329 16 6 12.7864 3.9525 2.0390 17 7 11.4738 6.0889 2.0788 18 7 10.1424 6.4885 1.9062 19 6 9.6356 7.8606 1.9867 20 6 9.6922 8.4978 0.6222 21 1 10.0677 7.9367 -0.2207 22 6 9.2587 9.7952 0.4487 23 7 8.8011 10.4783 1.4751 24 14 9.3217 10.5824 -1.2440 25 1 8.0456 10.3238 -1.9581 26 1 9.5211 12.0471 -1.1017 27 1 10.4485 10.0025 -2.0182 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 2.1770 1.5789 -2.0859 34 1 0.5920 2.0179 -1.4053 35 1 1.9824 3.1098 -1.1987 36 1 3.9925 1.0359 -0.6320 37 1 3.7121 0.8290 1.1136 38 1 3.3758 3.2744 1.3494 39 1 3.6562 3.4813 -0.3961 40 1 5.8649 2.1065 0.7027 41 1 7.5110 6.1507 1.4450 42 1 9.9825 3.2798 1.4930 43 1 12.9205 3.6296 3.0714 44 1 12.6935 3.0787 1.3941 45 1 13.6480 4.5435 1.7283 46 1 10.2491 8.4343 2.6814 47 1 8.6042 7.8469 2.3388 48 1 8.4964 11.3912 1.3531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533003763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:37 Heat of formation + Delta-G solvation = 15.871008 kcal Electronic energy + Delta-G solvation = -28616.892376 eV Core-core repulsion = 24516.108133 eV Total energy + Delta-G solvation = -4100.784243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.16875 -40.17555 -38.73438 -38.14215 -35.57582 -34.61488 -33.76935 -32.07963 -31.71808 -29.37009 -29.03541 -28.43444 -26.86921 -26.05737 -24.79911 -22.91295 -22.44466 -21.40301 -21.00290 -19.93948 -19.54212 -17.96565 -17.07889 -16.82679 -16.47791 -16.40085 -16.16296 -15.88001 -15.22775 -14.95855 -14.89289 -14.59954 -14.39137 -14.16870 -13.97303 -13.72538 -13.26859 -12.97540 -12.78638 -12.62954 -12.55551 -12.36483 -12.29682 -12.08045 -11.87440 -11.83215 -11.66943 -11.50660 -11.46447 -11.32532 -11.07501 -10.85820 -10.54330 -10.31782 -9.86079 -9.80706 -9.54314 -9.45838 -8.86328 -8.68840 -7.97569 -7.56798 -6.30317 -4.38821 1.22891 2.05155 2.62005 3.10681 3.19974 3.22538 3.26575 3.31861 3.54380 3.56257 3.86009 4.27208 4.33394 4.38972 4.55714 4.61612 4.74878 4.97319 5.03170 5.04904 5.07285 5.10536 5.29600 5.32623 5.44118 5.50766 5.53907 5.55099 5.60325 5.80323 5.94746 5.98624 6.04716 6.08101 6.14544 6.29033 6.50994 6.52263 6.54016 6.82130 6.92158 7.02112 7.37542 7.46782 7.53573 7.64506 7.80803 7.82555 8.07947 8.56388 8.69570 9.28656 10.77130 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.002514 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.962715 B =11135.829745 C =13219.737494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 N -0.539 5.539 4 C 0.014 3.986 5 C 0.043 3.957 6 C 0.120 3.880 7 N -0.702 5.702 8 C 0.517 3.483 9 O -0.505 6.505 10 C 0.513 3.487 11 O -0.499 6.499 12 N -0.607 5.607 13 C 0.293 3.707 14 C -0.287 4.287 15 C 0.049 3.951 16 C -0.062 4.062 17 N -0.277 5.277 18 N -0.340 5.340 19 C 0.255 3.745 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.888 5.888 24 Si 0.907 3.093 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.413 0.587 41 H 0.429 0.571 42 H 0.163 0.837 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.046 0.954 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 -21.038 -2.309 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.264 5.264 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.004 4.004 7 N -0.357 5.357 8 C 0.296 3.704 9 O -0.379 6.379 10 C 0.293 3.707 11 O -0.372 6.372 12 N -0.254 5.254 13 C 0.071 3.929 14 C -0.319 4.319 15 C -0.116 4.116 16 C -0.121 4.121 17 N -0.103 5.103 18 N -0.126 5.126 19 C 0.137 3.863 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.249 0.751 41 H 0.268 0.732 42 H 0.180 0.820 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.416 -19.371 -1.629 23.067 hybrid contribution -0.243 -0.346 -1.762 1.812 sum -12.660 -19.717 -3.391 23.675 Atomic orbital electron populations 1.21813 0.94575 1.01696 1.02707 1.22109 0.96385 0.88232 1.00982 1.61888 1.12598 1.16419 1.35472 1.22568 1.01884 0.99664 0.89307 1.22259 0.88352 0.96284 1.01663 1.21422 0.78959 0.96848 1.03122 1.45543 1.09430 1.09450 1.71235 1.19757 0.87759 0.84329 0.78528 1.90846 1.65771 1.32995 1.48304 1.19868 0.88314 0.83563 0.78912 1.90695 1.65262 1.33049 1.48229 1.42297 1.05760 1.11138 1.66243 1.17976 0.82150 0.89747 1.03046 1.21277 0.91076 0.99316 1.20220 1.22020 0.95846 0.91999 1.01691 1.20028 0.92563 0.97495 1.02019 1.77366 0.95466 1.12588 1.24839 1.49589 1.03464 1.07026 1.52530 1.19699 0.94841 0.72303 0.99455 1.21307 1.44435 0.98652 0.93629 0.91681 1.24938 0.94343 0.96553 0.97846 1.69915 1.41267 1.11202 1.30182 0.86339 0.78725 0.78391 0.83181 1.20247 1.20768 1.19643 0.91648 0.92555 0.92181 0.94737 0.90567 0.95348 0.90782 0.90714 0.93755 0.89707 0.89750 0.90689 0.75105 0.73240 0.82004 0.91300 0.91091 0.91419 0.92331 0.93592 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.84 37.16 0.37 -0.40 16 2 C 0.05 0.29 5.68 -3.83 -0.02 0.27 16 3 N -0.54 -3.79 4.76 -242.92 -1.16 -4.95 16 4 C 0.01 0.09 9.12 60.06 0.55 0.64 16 5 C 0.04 0.29 5.07 -3.82 -0.02 0.27 16 6 C 0.12 1.06 5.60 -4.04 -0.02 1.04 16 7 N -0.70 -7.18 5.55 -60.78 -0.34 -7.52 16 8 C 0.52 7.29 7.88 -11.66 -0.09 7.20 16 9 O -0.51 -8.49 16.48 5.48 0.09 -8.40 16 10 C 0.51 8.26 7.85 -11.65 -0.09 8.17 16 11 O -0.50 -8.20 13.60 5.46 0.07 -8.12 16 12 N -0.61 -11.26 5.40 -11.80 -0.06 -11.32 16 13 C 0.29 6.20 7.68 -152.85 -1.17 5.03 16 14 C -0.29 -5.69 9.58 -39.76 -0.38 -6.07 16 15 C 0.05 0.97 7.20 -82.47 -0.59 0.37 16 16 C -0.06 -0.89 10.44 36.01 0.38 -0.51 16 17 N -0.28 -6.39 12.56 33.64 0.42 -5.97 16 18 N -0.34 -8.03 3.62 -61.47 -0.22 -8.26 16 19 C 0.25 6.49 6.02 -5.20 -0.03 6.46 16 20 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 23 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 24 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.28 6.47 -51.93 -0.34 -0.05 16 30 H 0.06 0.25 8.14 -51.92 -0.42 -0.18 16 31 H 0.03 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.08 0.40 7.93 -51.92 -0.41 -0.01 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.43 6.30 -51.93 -0.33 0.10 16 35 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 36 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 37 H 0.08 0.50 7.93 -51.93 -0.41 0.09 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 40 H 0.41 3.50 7.94 -40.82 -0.32 3.17 16 41 H 0.43 8.04 7.45 -40.82 -0.30 7.74 16 42 H 0.16 3.00 5.83 -52.49 -0.31 2.69 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 1.59 8.14 -51.93 -0.42 1.17 16 47 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -31.88 400.82 -8.25 -40.13 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -7.26 Total: 7.35 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: -1.56 Total: 8.98 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: -0.62 Total: -62.19 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: 0.16 Total: -16.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.88 -8.25 -40.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533003763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.003 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds