Wall clock time and date at job start Tue Mar 31 2020 20:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46898 * 109.47074 * 2 1 4 4 C 1.46894 * 110.99918 * 293.94815 * 3 2 1 5 5 C 1.46903 * 110.99699 * 169.99754 * 3 2 1 6 6 C 1.53000 * 109.46908 * 190.00188 * 5 3 2 7 7 N 1.46500 * 109.47420 * 180.02562 * 6 5 3 8 8 C 1.34773 * 120.00522 * 179.97438 * 7 6 5 9 9 O 1.21368 * 119.99994 * 359.97438 * 8 7 6 10 10 C 1.49304 * 120.00278 * 180.02562 * 8 7 6 11 11 O 1.21392 * 119.99967 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00068 * 180.02562 * 10 8 7 13 13 C 1.39199 * 120.00053 * 179.97438 * 12 10 8 14 14 C 1.36219 * 126.27080 * 0.17906 * 13 12 10 15 15 C 1.39696 * 107.85485 * 180.26645 * 14 13 12 16 16 C 1.50701 * 125.76897 * 179.71308 * 15 14 13 17 17 N 1.30848 * 108.46002 * 359.73545 * 15 14 13 18 18 N 1.35860 * 126.27188 * 179.97438 * 13 12 10 19 19 C 1.46491 * 126.09683 * 359.97438 * 18 13 12 20 20 C 1.50702 * 109.46957 * 269.71194 * 19 18 13 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 H 1.09000 * 109.47533 * 300.00148 * 1 2 3 29 29 H 1.08999 * 109.46832 * 60.00269 * 1 2 3 30 30 H 1.09007 * 109.47384 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47533 * 239.99852 * 2 1 3 32 32 H 1.09008 * 109.46745 * 119.99941 * 2 1 3 33 33 H 1.09000 * 109.47589 * 296.04864 * 4 3 2 34 34 H 1.09003 * 109.47247 * 56.05269 * 4 3 2 35 35 H 1.09002 * 109.46873 * 176.04389 * 4 3 2 36 36 H 1.08999 * 109.47461 * 70.00187 * 5 3 2 37 37 H 1.09001 * 109.47228 * 309.99376 * 5 3 2 38 38 H 1.08996 * 109.47787 * 59.99742 * 6 5 3 39 39 H 1.09006 * 109.47380 * 299.99681 * 6 5 3 40 40 H 0.97008 * 119.99878 * 359.97438 * 7 6 5 41 41 H 0.96999 * 120.00308 * 359.97438 * 12 10 8 42 42 H 1.07999 * 126.07160 * 0.02562 * 14 13 12 43 43 H 1.08998 * 109.47246 * 270.00352 * 16 15 14 44 44 H 1.09002 * 109.47095 * 30.00331 * 16 15 14 45 45 H 1.09001 * 109.46834 * 149.99902 * 16 15 14 46 46 H 1.09004 * 109.47166 * 149.71460 * 19 18 13 47 47 H 1.08994 * 109.47507 * 29.71166 * 19 18 13 48 48 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6702 2.0668 -1.2533 5 6 3.4685 1.4310 0.2382 6 6 3.8998 2.8791 0.4792 7 7 5.3448 2.9252 0.7162 8 6 5.9516 4.1051 0.9529 9 8 5.3010 5.1295 0.9694 10 6 7.4243 4.1521 1.1939 11 8 8.0751 3.1276 1.1770 12 7 8.0310 5.3320 1.4311 13 6 9.4040 5.3758 1.6563 14 6 10.2539 4.3113 1.6626 15 6 11.5381 4.7902 1.9329 16 6 12.7864 3.9525 2.0390 17 7 11.4738 6.0889 2.0788 18 7 10.1424 6.4885 1.9062 19 6 9.6356 7.8606 1.9867 20 6 9.6922 8.4978 0.6222 21 1 10.0677 7.9367 -0.2207 22 6 9.2587 9.7952 0.4487 23 7 8.8011 10.4783 1.4751 24 14 9.3217 10.5824 -1.2440 25 1 8.0456 10.3238 -1.9581 26 1 9.5211 12.0471 -1.1017 27 1 10.4485 10.0025 -2.0182 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 2.1770 1.5789 -2.0859 34 1 0.5920 2.0179 -1.4053 35 1 1.9824 3.1098 -1.1987 36 1 3.9925 1.0359 -0.6320 37 1 3.7121 0.8290 1.1136 38 1 3.3758 3.2744 1.3494 39 1 3.6562 3.4813 -0.3961 40 1 5.8649 2.1065 0.7027 41 1 7.5110 6.1507 1.4450 42 1 9.9825 3.2798 1.4930 43 1 12.9205 3.6296 3.0714 44 1 12.6935 3.0787 1.3941 45 1 13.6480 4.5435 1.7283 46 1 10.2491 8.4343 2.6814 47 1 8.6042 7.8469 2.3388 48 1 8.4964 11.3912 1.3531 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533003763.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:35 Heat of formation + Delta-G solvation = -7.509331 kcal Electronic energy + Delta-G solvation = -28617.906224 eV Core-core repulsion = 24516.108133 eV Total energy + Delta-G solvation = -4101.798090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.63581 -41.53145 -39.84424 -38.90926 -36.75905 -35.99246 -35.53756 -33.85847 -32.31057 -30.89764 -30.19532 -29.57721 -27.83488 -27.54312 -25.92624 -24.72591 -23.25937 -22.36797 -21.86967 -21.42219 -20.88261 -19.31249 -18.88152 -18.26919 -17.89959 -17.45070 -17.14601 -16.75466 -16.60344 -16.20745 -16.05439 -15.85634 -15.49743 -15.40174 -14.94333 -14.72255 -14.61432 -14.45173 -14.07869 -13.95230 -13.59757 -13.44074 -13.14982 -13.13525 -12.98631 -12.91016 -12.83406 -12.74655 -12.70529 -12.35983 -12.31727 -12.09338 -12.07443 -11.75282 -11.73911 -11.41674 -10.88792 -10.78061 -10.40757 -9.68918 -9.36581 -9.18603 -8.38563 -6.56048 -0.06197 0.78419 1.08688 1.35068 1.35576 1.46907 1.76588 1.81871 2.10226 2.28247 2.37551 2.92095 2.94353 3.26547 3.75134 3.79103 3.98347 4.13568 4.13612 4.29624 4.43835 4.49416 4.54057 4.58125 4.65189 4.66408 4.69042 4.77104 4.82061 4.86403 4.90154 4.93382 4.97609 5.01130 5.07423 5.14372 5.16875 5.20218 5.38811 5.48153 5.73708 5.76652 5.93134 5.96679 6.01107 6.05900 6.16922 6.45161 6.58662 6.73304 6.95452 7.15660 8.68289 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.002514 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.962715 B =11135.829745 C =13219.737494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.552 5.552 4 C 0.013 3.987 5 C 0.050 3.950 6 C 0.121 3.879 7 N -0.677 5.677 8 C 0.523 3.477 9 O -0.536 6.536 10 C 0.517 3.483 11 O -0.498 6.498 12 N -0.615 5.615 13 C 0.287 3.713 14 C -0.290 4.290 15 C 0.059 3.941 16 C -0.061 4.061 17 N -0.322 5.322 18 N -0.367 5.367 19 C 0.271 3.729 20 C -0.557 4.557 21 H 0.049 0.951 22 C 0.024 3.976 23 N -0.914 5.914 24 Si 0.970 3.030 25 H -0.267 1.267 26 H -0.272 1.272 27 H -0.274 1.274 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.424 0.576 41 H 0.425 0.575 42 H 0.179 0.821 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.071 0.929 46 H 0.031 0.969 47 H 0.043 0.957 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 -23.289 -3.377 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.277 5.277 4 C -0.134 4.134 5 C -0.078 4.078 6 C -0.002 4.002 7 N -0.331 5.331 8 C 0.302 3.698 9 O -0.413 6.413 10 C 0.299 3.701 11 O -0.371 6.371 12 N -0.263 5.263 13 C 0.066 3.934 14 C -0.321 4.321 15 C -0.106 4.106 16 C -0.119 4.119 17 N -0.147 5.147 18 N -0.152 5.152 19 C 0.152 3.848 20 C -0.595 4.595 21 H 0.068 0.932 22 C -0.178 4.178 23 N -0.552 5.552 24 Si 0.794 3.206 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.115 0.885 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.263 0.737 41 H 0.263 0.737 42 H 0.196 0.804 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.060 0.940 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.790 -21.698 -2.698 25.331 hybrid contribution -0.159 0.193 -1.400 1.422 sum -12.948 -21.505 -4.098 25.435 Atomic orbital electron populations 1.21798 0.94254 1.02305 1.02219 1.22160 0.96654 0.87468 1.01475 1.61884 1.12671 1.17378 1.35768 1.22565 1.02336 0.99206 0.89337 1.22195 0.88456 0.94553 1.02621 1.21515 0.77542 0.98582 1.02534 1.45476 1.10162 1.08581 1.68896 1.19394 0.86548 0.85016 0.78855 1.90844 1.65869 1.34250 1.50315 1.20252 0.89195 0.82730 0.77921 1.90669 1.65646 1.32807 1.47950 1.42447 1.04898 1.11913 1.67014 1.18386 0.83278 0.89405 1.02368 1.21556 0.90977 0.99525 1.20080 1.22933 0.97699 0.91265 0.98710 1.20256 0.90006 0.97495 1.04151 1.77327 0.95512 1.14618 1.27255 1.49352 1.04313 1.06750 1.54834 1.19229 0.94034 0.73536 0.97976 1.21408 1.44904 0.99227 0.93931 0.93232 1.25742 0.93672 0.96837 1.01532 1.69996 1.41541 1.11655 1.32004 0.85365 0.78825 0.77746 0.78646 1.19188 1.19665 1.19919 0.92516 0.92632 0.91051 0.94288 0.89964 0.94997 0.90225 0.91518 0.92836 0.88478 0.90557 0.91148 0.73724 0.73672 0.80372 0.89044 0.88389 0.90957 0.95046 0.93970 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.84 71.98 0.71 -0.58 16 2 C 0.05 0.47 5.68 86.30 0.49 0.96 16 3 N -0.55 -6.85 4.76 -922.46 -4.39 -11.24 16 4 C 0.01 0.16 9.12 127.69 1.17 1.32 16 5 C 0.05 0.56 5.07 86.30 0.44 1.00 16 6 C 0.12 1.98 5.60 86.38 0.48 2.47 16 7 N -0.68 -12.77 5.55 -464.56 -2.58 -15.34 16 8 C 0.52 14.40 7.88 87.22 0.69 15.09 16 9 O -0.54 -18.09 16.48 -3.30 -0.05 -18.14 16 10 C 0.52 16.35 7.85 87.22 0.68 17.03 16 11 O -0.50 -15.54 13.60 -3.38 -0.05 -15.59 16 12 N -0.61 -23.18 5.40 -309.58 -1.67 -24.85 16 13 C 0.29 12.31 7.68 131.25 1.01 13.31 16 14 C -0.29 -11.22 9.58 22.15 0.21 -11.01 16 15 C 0.06 2.27 7.20 43.06 0.31 2.58 16 16 C -0.06 -1.57 10.44 71.24 0.74 -0.83 16 17 N -0.32 -15.09 12.56 -47.49 -0.60 -15.69 16 18 N -0.37 -17.87 3.62 -348.40 -1.26 -19.13 16 19 C 0.27 14.49 6.02 85.64 0.52 15.01 16 20 C -0.56 -31.51 9.39 25.60 0.24 -31.27 16 21 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.32 5.46 84.66 0.46 1.78 16 23 N -0.91 -52.11 13.29 21.45 0.28 -51.83 16 24 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.49 6.47 -2.39 -0.02 0.47 16 30 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.04 0.34 8.12 -2.39 -0.02 0.32 16 32 H 0.08 0.68 7.93 -2.38 -0.02 0.66 16 33 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.08 0.83 6.30 -2.39 -0.02 0.82 16 35 H 0.07 0.88 6.47 -2.39 -0.02 0.87 16 36 H 0.05 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.10 0.88 7.93 -2.39 -0.02 0.86 16 38 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.07 1.27 6.55 -2.38 -0.02 1.26 16 40 H 0.42 6.17 7.94 -92.70 -0.74 5.43 16 41 H 0.43 16.58 7.45 -92.71 -0.69 15.89 16 42 H 0.18 6.23 5.83 -2.91 -0.02 6.21 16 43 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.04 2.24 7.51 -2.39 -0.02 2.22 16 48 H 0.27 14.62 8.31 -92.70 -0.77 13.84 16 Total: -1.00 -69.57 400.82 -0.57 -70.14 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.43 Total: 29.04 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 8.15 Total: 26.88 kcal Atomic # 7 Polarization: -127.87 SS G_CDS: -10.22 Total: -138.09 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.10 Total: -33.73 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -69.57 -0.57 -70.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533003763.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.629 kcal (2) G-P(sol) polarization free energy of solvation -69.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds