Wall clock time and date at job start Tue Mar 31 2020 21:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47522 * 89.99831 * 8 6 4 10 10 H 1.48508 * 109.46941 * 209.99577 * 8 6 4 11 11 H 1.48502 * 109.47592 * 329.99302 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46626 * 179.97438 * 15 14 12 17 17 C 1.46842 * 111.00006 * 45.79214 * 16 15 14 18 18 C 1.53041 * 109.52182 * 185.83625 * 17 16 15 19 19 C 1.53117 * 109.27666 * 300.81975 * 18 17 16 20 20 N 1.46502 * 109.57543 * 177.59228 * 19 18 17 21 21 C 1.36604 * 127.11705 * 299.97367 * 20 19 18 22 22 N 1.30327 * 107.28192 * 179.89287 * 21 20 19 23 23 N 1.28539 * 109.99321 * 0.37703 * 22 21 20 24 24 C 1.31030 * 109.86132 * 359.76035 * 23 22 21 25 25 O 1.35533 * 126.45390 * 179.97438 * 24 23 22 26 26 C 1.53120 * 109.16040 * 57.65645 * 19 18 17 27 27 C 1.46850 * 110.99680 * 170.00177 * 16 15 14 28 28 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 29 29 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 30 30 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 31 31 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 32 32 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 33 33 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 35 35 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 36 36 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 37 37 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 38 38 H 1.08997 * 109.46253 * 305.85236 * 17 16 15 39 39 H 1.08999 * 109.46071 * 65.82264 * 17 16 15 40 40 H 1.09006 * 109.50144 * 180.88125 * 18 17 16 41 41 H 1.09000 * 109.53767 * 60.78021 * 18 17 16 42 42 H 1.09003 * 109.52798 * 297.74644 * 19 18 17 43 43 H 1.07995 * 126.35949 * 0.03031 * 21 20 19 44 44 H 0.96702 * 113.99833 * 270.00664 * 25 24 23 45 45 H 1.09008 * 109.49808 * 182.40115 * 26 19 18 46 46 H 1.08995 * 109.53478 * 62.30704 * 26 19 18 47 47 H 1.08999 * 109.45996 * 294.17720 * 27 16 15 48 48 H 1.09000 * 109.46157 * 54.15651 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.3079 4.2605 -3.8999 10 1 4.6984 4.1993 -3.4968 11 1 3.5540 2.2200 -4.3052 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6449 -4.9074 0.0001 17 6 0.5537 -4.8854 -0.9822 18 6 -0.2767 -6.1645 -0.8529 19 6 0.6251 -7.3788 -1.0911 20 7 -0.1505 -8.6087 -0.9123 21 6 -0.8018 -9.0157 0.2174 22 7 -1.3655 -10.1595 -0.0515 23 7 -1.1085 -10.5021 -1.2634 24 6 -0.3668 -9.5867 -1.8369 25 8 0.0983 -9.6083 -3.1098 26 6 1.7802 -7.3517 -0.0864 27 6 2.5510 -6.0383 -0.2379 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4434 -0.8505 34 1 0.7583 -2.5299 -0.8903 35 1 0.7590 -2.5303 0.8897 36 1 3.0062 -3.5775 -0.8904 37 1 3.0062 -3.5775 0.8895 38 1 -0.0824 -4.0194 -0.7991 39 1 0.9710 -4.8234 -1.9872 40 1 -1.0772 -6.1549 -1.5927 41 1 -0.7061 -6.2207 0.1473 42 1 1.0233 -7.3436 -2.1051 43 1 -0.8439 -8.4866 1.1580 44 1 0.9615 -10.0336 -3.2059 45 1 2.4493 -8.1906 -0.2785 46 1 1.3843 -7.4266 0.9263 47 1 2.9588 -5.9709 -1.2465 48 1 3.3654 -6.0098 0.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565870815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:39 Heat of formation + Delta-G solvation = 19.099414 kcal Electronic energy + Delta-G solvation = -29138.464128 eV Core-core repulsion = 25037.819879 eV Total energy + Delta-G solvation = -4100.644249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.46426 -39.90739 -38.86601 -38.11452 -36.05702 -34.87895 -32.94946 -32.53267 -31.56197 -30.23971 -29.98061 -27.77616 -26.04023 -25.42975 -23.91756 -23.56331 -22.88714 -22.47652 -21.40236 -20.11660 -19.39917 -18.41987 -17.64111 -16.96089 -16.61167 -16.40378 -15.87714 -15.71448 -15.48715 -15.36382 -15.12705 -14.94608 -14.56104 -14.24739 -14.07170 -13.96273 -13.47122 -12.96789 -12.83339 -12.52699 -12.40367 -12.28797 -12.13256 -12.09788 -11.87334 -11.81471 -11.65340 -11.41773 -11.31383 -11.19235 -11.01273 -10.90515 -10.64111 -10.60870 -10.39499 -10.21543 -9.68992 -9.61421 -8.98392 -8.65842 -8.49235 -7.71463 -6.09911 -4.14942 1.17082 1.67389 2.36992 3.24983 3.25999 3.30642 3.32979 3.37956 3.39749 3.79313 3.99196 4.04354 4.14753 4.29828 4.39378 4.54399 4.72846 4.77116 4.81205 4.89453 4.92472 5.01356 5.08969 5.13879 5.24017 5.25881 5.26690 5.36868 5.38910 5.45510 5.50001 5.52989 5.65939 5.70458 5.83636 5.93676 6.00623 6.08526 6.14188 6.69924 6.71215 6.85529 6.99405 7.38214 7.46996 7.86063 8.17297 8.24730 8.34492 8.83595 9.01592 9.50193 10.98123 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.001963 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.472789 B =14260.105295 C =14561.751693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.603 5.603 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.143 4.143 15 C 0.073 3.927 16 N -0.540 5.540 17 C 0.048 3.952 18 C -0.123 4.123 19 C 0.133 3.867 20 N -0.478 5.478 21 C 0.170 3.830 22 N -0.284 5.284 23 N -0.288 5.288 24 C 0.345 3.655 25 O -0.437 6.437 26 C -0.123 4.123 27 C 0.059 3.941 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.044 0.956 33 H 0.264 0.736 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.224 0.776 44 H 0.406 0.594 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -22.879 1.226 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.074 0.926 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 C 0.290 3.710 13 O -0.423 6.423 14 C -0.184 4.184 15 C -0.054 4.054 16 N -0.265 5.265 17 C -0.081 4.081 18 C -0.161 4.161 19 C 0.030 3.970 20 N -0.181 5.181 21 C -0.117 4.117 22 N -0.125 5.125 23 N -0.139 5.139 24 C 0.041 3.959 25 O -0.237 6.237 26 C -0.161 4.161 27 C -0.070 4.070 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.058 0.942 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.122 0.878 43 H 0.240 0.760 44 H 0.263 0.737 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.058 0.942 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.849 -23.708 1.611 25.026 hybrid contribution 1.687 1.636 -2.036 3.110 sum -6.162 -22.073 -0.426 22.920 Atomic orbital electron populations 1.21636 0.81435 1.02491 1.00470 1.48168 1.06191 1.07914 1.71189 1.19294 0.92575 0.78103 0.97498 1.21409 1.36581 1.06320 0.92248 0.92575 1.24948 0.95359 0.96417 0.97461 1.69930 1.38306 1.14305 1.30728 0.86494 0.77735 0.78572 0.84585 1.20608 1.21037 1.19977 1.20238 0.88066 0.85106 0.77589 1.90673 1.13947 1.87318 1.50318 1.21828 0.99413 0.93173 1.03952 1.21839 0.94896 0.85826 1.02853 1.62074 1.11777 1.03332 1.49289 1.22210 0.93986 0.97688 0.94178 1.21988 0.97757 0.92448 1.03935 1.21747 0.91908 0.81316 1.01998 1.47218 1.40195 1.19195 1.11450 1.26342 0.97021 0.95719 0.92574 1.74261 1.20268 1.11144 1.06866 1.74624 1.15830 1.21393 1.02009 1.22204 1.00588 0.88072 0.85056 1.84918 1.41153 1.81120 1.16494 1.21989 0.96046 0.98248 0.99827 1.22011 0.94984 0.89116 1.00862 0.93640 0.90787 0.92580 0.94999 0.93817 0.92670 0.89410 0.88696 0.93550 0.89404 0.88723 0.94173 0.90482 0.89715 0.87785 0.75991 0.73684 0.90696 0.89641 0.94206 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.24 59.85 0.61 1.84 16 2 N -0.60 -12.16 2.86 -182.95 -0.52 -12.68 16 3 C 0.24 6.25 5.16 -5.19 -0.03 6.22 16 4 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 5 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 6 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 7 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 8 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.50 9.71 7.67 -10.99 -0.08 9.62 16 13 O -0.54 -12.95 15.56 5.56 0.09 -12.86 16 14 C -0.14 -1.81 3.50 -27.88 -0.10 -1.91 16 15 C 0.07 0.86 4.56 -3.82 -0.02 0.84 16 16 N -0.54 -4.56 4.81 -234.67 -1.13 -5.69 16 17 C 0.05 0.35 4.85 -3.83 -0.02 0.33 16 18 C -0.12 -0.72 5.47 -26.65 -0.15 -0.87 16 19 C 0.13 0.74 2.96 -67.81 -0.20 0.54 16 20 N -0.48 -3.44 2.65 -112.49 -0.30 -3.73 16 21 C 0.17 1.29 11.82 -89.07 -1.05 0.24 16 22 N -0.28 -3.20 12.18 29.87 0.36 -2.84 16 23 N -0.29 -3.47 12.22 29.65 0.36 -3.11 16 24 C 0.35 3.19 9.22 -88.76 -0.82 2.37 16 25 O -0.44 -3.06 13.43 -18.29 -0.25 -3.30 16 26 C -0.12 -0.62 5.47 -26.65 -0.15 -0.76 16 27 C 0.06 0.40 5.42 -3.84 -0.02 0.38 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.06 0.64 6.44 -51.93 -0.33 0.31 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.09 0.97 5.47 -51.93 -0.28 0.68 16 35 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 36 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 37 H 0.09 1.13 8.10 -51.93 -0.42 0.71 16 38 H 0.09 0.69 5.81 -51.93 -0.30 0.38 16 39 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.47 7.93 -51.93 -0.41 0.06 16 42 H 0.10 0.57 7.91 -51.93 -0.41 0.16 16 43 H 0.22 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.41 0.71 9.06 45.56 0.41 1.12 16 45 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 46 H 0.08 0.43 7.92 -51.93 -0.41 0.02 16 47 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 LS Contribution 390.41 15.07 5.88 5.88 Total: -1.00 -36.69 390.41 -8.95 -45.63 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -6.73 Total: -3.78 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -2.44 Total: 5.48 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: -0.49 Total: -53.53 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.16 Total: -16.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.69 -8.95 -45.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565870815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.732 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds