Wall clock time and date at job start Tue Mar 31 2020 21:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00123 * 2 1 4 4 C 1.50702 * 109.46904 * 269.99929 * 3 2 1 5 5 H 1.07993 * 120.00490 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99735 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00050 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 119.99825 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47522 * 89.99831 * 8 6 4 10 10 H 1.48508 * 109.46941 * 209.99577 * 8 6 4 11 11 H 1.48502 * 109.47592 * 329.99302 * 8 6 4 12 12 C 1.34779 * 119.99707 * 180.02562 * 2 1 3 13 13 O 1.21282 * 119.99922 * 180.02562 * 12 2 1 14 14 C 1.50699 * 120.00037 * 359.97438 * 12 2 1 15 15 C 1.53006 * 109.46866 * 180.02562 * 14 12 2 16 16 N 1.46902 * 109.46626 * 179.97438 * 15 14 12 17 17 C 1.46842 * 111.00006 * 45.79214 * 16 15 14 18 18 C 1.53041 * 109.52182 * 185.83625 * 17 16 15 19 19 C 1.53117 * 109.27666 * 300.81975 * 18 17 16 20 20 N 1.46502 * 109.57543 * 177.59228 * 19 18 17 21 21 C 1.36604 * 127.11705 * 299.97367 * 20 19 18 22 22 N 1.30327 * 107.28192 * 179.89287 * 21 20 19 23 23 N 1.28539 * 109.99321 * 0.37703 * 22 21 20 24 24 C 1.31030 * 109.86132 * 359.76035 * 23 22 21 25 25 O 1.35533 * 126.45390 * 179.97438 * 24 23 22 26 26 C 1.53120 * 109.16040 * 57.65645 * 19 18 17 27 27 C 1.46850 * 110.99680 * 170.00177 * 16 15 14 28 28 H 1.09002 * 109.47085 * 270.00430 * 1 2 3 29 29 H 1.09002 * 109.46740 * 30.00103 * 1 2 3 30 30 H 1.09001 * 109.47266 * 149.99827 * 1 2 3 31 31 H 1.08991 * 109.47410 * 30.00046 * 3 2 1 32 32 H 1.09007 * 109.47039 * 150.00320 * 3 2 1 33 33 H 0.97004 * 119.99848 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47247 * 60.00371 * 14 12 2 35 35 H 1.09001 * 109.47358 * 299.99798 * 14 12 2 36 36 H 1.08993 * 109.46955 * 300.00219 * 15 14 12 37 37 H 1.09000 * 109.47050 * 60.00048 * 15 14 12 38 38 H 1.08997 * 109.46253 * 305.85236 * 17 16 15 39 39 H 1.08999 * 109.46071 * 65.82264 * 17 16 15 40 40 H 1.09006 * 109.50144 * 180.88125 * 18 17 16 41 41 H 1.09000 * 109.53767 * 60.78021 * 18 17 16 42 42 H 1.09003 * 109.52798 * 297.74644 * 19 18 17 43 43 H 1.07995 * 126.35949 * 0.03031 * 21 20 19 44 44 H 0.96702 * 113.99833 * 270.00664 * 25 24 23 45 45 H 1.09008 * 109.49808 * 182.40115 * 26 19 18 46 46 H 1.08995 * 109.53478 * 62.30704 * 26 19 18 47 47 H 1.08999 * 109.45996 * 294.17720 * 27 16 15 48 48 H 1.09000 * 109.46157 * 54.15651 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5543 3.6175 -0.6732 8 14 3.4377 3.4169 -3.4339 9 1 2.3079 4.2605 -3.8999 10 1 4.6984 4.1993 -3.4968 11 1 3.5540 2.2200 -4.3052 12 6 2.1388 -1.1673 -0.0005 13 8 3.3517 -1.1673 -0.0001 14 6 1.3853 -2.4723 -0.0005 15 6 2.3796 -3.6353 -0.0005 16 7 1.6449 -4.9074 0.0001 17 6 0.5537 -4.8854 -0.9822 18 6 -0.2767 -6.1645 -0.8529 19 6 0.6251 -7.3788 -1.0911 20 7 -0.1505 -8.6087 -0.9123 21 6 -0.8018 -9.0157 0.2174 22 7 -1.3655 -10.1595 -0.0515 23 7 -1.1085 -10.5021 -1.2634 24 6 -0.3668 -9.5867 -1.8369 25 8 0.0983 -9.6083 -3.1098 26 6 1.7802 -7.3517 -0.0864 27 6 2.5510 -6.0383 -0.2379 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6086 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 4.0312 4.4434 -0.8505 34 1 0.7583 -2.5299 -0.8903 35 1 0.7590 -2.5303 0.8897 36 1 3.0062 -3.5775 -0.8904 37 1 3.0062 -3.5775 0.8895 38 1 -0.0824 -4.0194 -0.7991 39 1 0.9710 -4.8234 -1.9872 40 1 -1.0772 -6.1549 -1.5927 41 1 -0.7061 -6.2207 0.1473 42 1 1.0233 -7.3436 -2.1051 43 1 -0.8439 -8.4866 1.1580 44 1 0.9615 -10.0336 -3.2059 45 1 2.4493 -8.1906 -0.2785 46 1 1.3843 -7.4266 0.9263 47 1 2.9588 -5.9709 -1.2465 48 1 3.3654 -6.0098 0.4859 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565870815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:37 Heat of formation + Delta-G solvation = -9.757141 kcal Electronic energy + Delta-G solvation = -29139.715442 eV Core-core repulsion = 25037.819879 eV Total energy + Delta-G solvation = -4101.895563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.08416 -40.90511 -39.99942 -38.65072 -36.84818 -36.46988 -34.75535 -33.57067 -32.07851 -31.02663 -30.88971 -29.44903 -27.31788 -26.44059 -24.97114 -24.46416 -23.68907 -23.24164 -22.36689 -20.67552 -19.98583 -19.79311 -18.71040 -18.30317 -17.93348 -17.23696 -17.05071 -16.78516 -16.40185 -16.26131 -16.15816 -15.87868 -15.52472 -15.32715 -14.78269 -14.71204 -14.54946 -14.11108 -13.96073 -13.64222 -13.44688 -13.39791 -13.24915 -13.21564 -12.97870 -12.87408 -12.78171 -12.49809 -12.36721 -12.25472 -12.21842 -12.04416 -11.93067 -11.76280 -11.69006 -11.24508 -10.95848 -10.65434 -10.57378 -10.27839 -9.41632 -9.35290 -8.23496 -6.38476 0.61930 1.12486 1.35370 1.38031 1.48090 1.72802 1.86016 2.28108 2.41457 2.75165 2.89832 3.05886 3.34318 3.57208 3.68698 3.81424 3.85581 3.91432 4.09146 4.15466 4.24717 4.27093 4.31508 4.37155 4.43954 4.55535 4.62208 4.72840 4.73855 4.75089 4.84615 4.88913 4.94078 4.97731 4.99330 5.02498 5.03850 5.09969 5.23253 5.24093 5.55467 5.65412 5.84048 5.94524 6.05179 6.07431 6.43911 6.69178 6.81063 7.27617 7.49974 7.60381 8.83332 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022974 B = 0.001963 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.472789 B =14260.105295 C =14561.751693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.541 4.541 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.273 1.273 12 C 0.493 3.507 13 O -0.602 6.602 14 C -0.123 4.123 15 C 0.081 3.919 16 N -0.533 5.533 17 C 0.045 3.955 18 C -0.115 4.115 19 C 0.137 3.863 20 N -0.472 5.472 21 C 0.186 3.814 22 N -0.326 5.326 23 N -0.334 5.334 24 C 0.348 3.652 25 O -0.444 6.444 26 C -0.111 4.111 27 C 0.056 3.944 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.022 0.978 32 H -0.003 1.003 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.259 0.741 44 H 0.427 0.573 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.037 0.963 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.665 -23.816 0.487 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.343 5.343 3 C 0.136 3.864 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.194 4.194 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.207 1.207 11 H -0.197 1.197 12 C 0.282 3.718 13 O -0.484 6.484 14 C -0.163 4.163 15 C -0.047 4.047 16 N -0.257 5.257 17 C -0.083 4.083 18 C -0.154 4.154 19 C 0.035 3.965 20 N -0.174 5.174 21 C -0.102 4.102 22 N -0.167 5.167 23 N -0.184 5.184 24 C 0.042 3.958 25 O -0.246 6.246 26 C -0.150 4.150 27 C -0.072 4.072 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.142 0.858 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.125 0.875 43 H 0.275 0.725 44 H 0.288 0.712 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.056 0.944 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.428 -24.683 0.867 26.436 hybrid contribution 2.197 1.927 -1.783 3.423 sum -7.231 -22.756 -0.915 23.895 Atomic orbital electron populations 1.21945 0.77756 1.04023 1.02666 1.48212 1.08498 1.06432 1.71197 1.18741 0.91113 0.80622 0.95937 1.21693 1.36711 1.06507 0.93057 0.92852 1.25885 0.95003 0.96534 1.01974 1.70052 1.38947 1.14780 1.33022 0.85410 0.78061 0.78210 0.79086 1.18820 1.20725 1.19737 1.21432 0.87823 0.86772 0.75808 1.90641 1.16811 1.88273 1.52637 1.21774 0.99063 0.89020 1.06440 1.21620 0.94599 0.87370 1.01083 1.62089 1.11780 1.02030 1.49847 1.22289 0.93621 0.98822 0.93593 1.21918 0.97386 0.91523 1.04548 1.21803 0.91775 0.80554 1.02409 1.47251 1.40066 1.19156 1.10919 1.27017 0.95103 0.94635 0.93453 1.74169 1.22268 1.13207 1.07030 1.74516 1.17705 1.23292 1.02904 1.22236 0.99976 0.87997 0.85566 1.84873 1.42803 1.81455 1.15507 1.21897 0.95750 0.97295 1.00041 1.22073 0.95083 0.89330 1.00718 0.91053 0.91870 0.88454 0.95988 0.98501 0.92420 0.86797 0.85750 0.95857 0.91036 0.88061 0.94594 0.90450 0.88739 0.87477 0.72523 0.71159 0.89740 0.88904 0.94440 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.24 127.77 1.31 3.40 16 2 N -0.61 -24.60 2.86 -851.12 -2.43 -27.03 16 3 C 0.26 13.66 5.16 85.63 0.44 14.10 16 4 C -0.54 -30.68 9.39 25.60 0.24 -30.44 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 8 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 9 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C 0.49 18.91 7.67 87.66 0.67 19.58 16 13 O -0.60 -29.76 15.56 -3.04 -0.05 -29.80 16 14 C -0.12 -2.81 3.50 29.85 0.10 -2.70 16 15 C 0.08 1.81 4.56 86.31 0.39 2.21 16 16 N -0.53 -7.62 4.81 -896.37 -4.31 -11.93 16 17 C 0.04 0.50 4.85 86.33 0.42 0.92 16 18 C -0.12 -0.94 5.47 30.65 0.17 -0.77 16 19 C 0.14 1.10 2.96 45.07 0.13 1.23 16 20 N -0.47 -5.58 2.65 -620.60 -1.65 -7.23 16 21 C 0.19 2.35 11.82 179.81 2.13 4.47 16 22 N -0.33 -7.03 12.18 -59.41 -0.72 -7.76 16 23 N -0.33 -7.87 12.22 -173.68 -2.12 -9.99 16 24 C 0.35 5.90 9.22 179.70 1.66 7.56 16 25 O -0.44 -5.47 13.43 -88.37 -1.19 -6.66 16 26 C -0.11 -0.78 5.47 30.64 0.17 -0.62 16 27 C 0.06 0.65 5.42 86.32 0.47 1.12 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.55 16 29 H 0.06 1.84 8.07 -2.39 -0.02 1.82 16 30 H 0.10 1.80 6.44 -2.39 -0.02 1.78 16 31 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.00 -0.19 7.42 -2.38 -0.02 -0.21 16 33 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.11 2.05 5.47 -2.39 -0.01 2.04 16 35 H 0.12 2.19 8.11 -2.39 -0.02 2.17 16 36 H 0.02 0.62 8.04 -2.39 -0.02 0.60 16 37 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 38 H 0.10 1.01 5.81 -2.39 -0.01 1.00 16 39 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 40 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.09 0.63 7.93 -2.39 -0.02 0.61 16 42 H 0.11 0.86 7.91 -2.39 -0.02 0.84 16 43 H 0.26 0.99 8.06 -2.91 -0.02 0.96 16 44 H 0.43 0.74 9.06 -74.06 -0.67 0.06 16 45 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 46 H 0.09 0.58 7.92 -2.39 -0.02 0.56 16 47 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 Total: -1.00 -84.70 390.41 -1.09 -85.79 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 0.30 Total: 2.95 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 8.76 Total: 20.81 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -10.95 Total: -119.34 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -1.23 Total: -36.46 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -84.70 -1.09 -85.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565870815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.034 kcal (2) G-P(sol) polarization free energy of solvation -84.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds