Wall clock time and date at job start Tue Mar 31 2020 21:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99407 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.48151 * 119.99753 * 179.97438 * 21 20 19 24 24 C 1.39440 * 120.09777 * 179.97438 * 23 21 20 25 25 N 1.32077 * 119.87400 * 180.02562 * 24 23 21 26 26 C 1.32141 * 120.07374 * 0.02562 * 25 24 23 27 27 C 1.38731 * 120.19295 * 359.97438 * 26 25 24 28 28 N 1.31802 * 120.12477 * 359.72665 * 27 26 25 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 44 44 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 45 45 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 46 46 H 1.07997 * 120.06207 * 359.97438 * 24 23 21 47 47 H 1.07995 * 119.90511 * 180.02562 * 26 25 24 48 48 H 1.07995 * 119.93649 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.2778 -4.5621 -3.7001 22 8 9.9489 -4.3566 -2.7082 23 6 9.8598 -5.2927 -4.8500 24 6 11.1777 -5.7450 -4.7964 25 7 11.6923 -6.3955 -5.8243 26 6 10.9600 -6.6169 -6.9017 27 6 9.6485 -6.1681 -6.9582 28 7 9.1253 -5.5234 -5.9346 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.9612 -1.4912 -1.5593 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 8.0083 -2.4998 -2.4293 44 1 7.4512 -4.0400 -1.7326 45 1 7.4683 -4.2890 -4.5463 46 1 11.7768 -5.5631 -3.9164 47 1 11.3834 -7.1494 -7.7404 48 1 9.0538 -6.3509 -7.8409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566110557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:29 Heat of formation + Delta-G solvation = -24.596855 kcal Electronic energy + Delta-G solvation = -27495.596601 eV Core-core repulsion = 23393.057540 eV Total energy + Delta-G solvation = -4102.539061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81983 -39.75880 -38.23866 -36.61077 -35.48001 -35.07861 -34.18983 -32.46966 -32.36219 -30.45586 -28.44145 -27.26583 -26.11516 -25.29477 -24.81405 -23.37215 -22.42420 -21.61666 -21.29607 -20.03686 -18.74541 -18.19035 -17.39223 -16.64156 -16.53701 -16.26586 -16.11311 -15.69018 -15.49260 -15.19430 -14.94822 -14.65995 -14.62176 -14.38503 -14.06462 -13.68381 -13.45594 -13.32323 -13.20054 -12.80185 -12.35705 -12.20662 -11.95973 -11.91891 -11.79638 -11.64987 -11.37954 -11.11280 -10.93496 -10.86543 -10.69240 -10.59817 -10.37130 -10.11320 -9.78223 -9.75261 -9.52044 -9.48439 -9.11854 -8.55289 -8.40121 -7.19311 -6.00612 -4.00860 -0.23412 0.38671 2.21106 2.46712 3.18188 3.31459 3.35254 3.40882 3.44491 3.56059 3.77311 3.99896 4.22683 4.45705 4.48640 4.53212 4.64312 4.71774 4.87962 4.88760 4.94865 5.16249 5.28483 5.34087 5.39623 5.57195 5.59434 5.61083 5.66176 5.70056 5.72609 5.94188 6.03730 6.08825 6.35015 6.43321 6.47983 6.71765 6.78718 6.88619 7.09822 7.20221 7.27679 7.31552 7.65799 7.82442 8.09611 8.18368 8.27160 8.57405 9.06531 9.63169 11.10556 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.001501 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.714082 B =18653.069600 C =19280.381026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.531 5.531 3 C 0.193 3.807 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.101 0.899 15 O -0.530 6.530 16 C 0.030 3.970 17 N -0.674 5.674 18 C 0.049 3.951 19 C 0.117 3.883 20 N -0.707 5.707 21 C 0.575 3.425 22 O -0.522 6.522 23 C 0.030 3.970 24 C 0.111 3.889 25 N -0.439 5.439 26 C 0.073 3.927 27 C 0.050 3.950 28 N -0.414 5.414 29 H 0.011 0.989 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.030 0.970 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.361 0.639 38 H 0.073 0.927 39 H 0.037 0.963 40 H 0.348 0.652 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.410 0.590 46 H 0.185 0.815 47 H 0.178 0.822 48 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.819 -22.222 -18.956 31.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.255 5.255 3 C 0.068 3.932 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.118 0.882 15 O -0.332 6.332 16 C -0.100 4.100 17 N -0.306 5.306 18 C -0.081 4.081 19 C -0.006 4.006 20 N -0.358 5.358 21 C 0.357 3.643 22 O -0.397 6.397 23 C -0.111 4.111 24 C -0.048 4.048 25 N -0.153 5.153 26 C -0.088 4.088 27 C -0.112 4.112 28 N -0.132 5.132 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.206 0.794 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.167 0.833 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.246 0.754 46 H 0.202 0.798 47 H 0.195 0.805 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.724 -22.168 -17.193 30.805 hybrid contribution -1.008 1.213 -1.512 2.185 sum 11.717 -20.956 -18.705 30.435 Atomic orbital electron populations 1.22192 0.88827 0.98577 1.01138 1.62024 1.06518 1.17789 1.39143 1.19777 0.95400 0.81469 0.96550 1.21164 1.34609 0.96808 1.01674 0.91852 1.24986 0.95333 0.97368 0.96987 1.69953 1.38612 1.11457 1.34072 0.86486 0.78890 0.78284 0.83681 1.20575 1.21412 1.19882 1.22683 0.96039 0.98084 0.93588 1.21866 0.95091 0.93055 0.84245 0.88158 1.86692 1.74183 1.34183 1.38191 1.22727 0.89456 0.99652 0.98208 1.60222 1.02998 1.30568 1.36843 1.22071 0.93985 0.99307 0.92771 1.21399 0.93118 0.97340 0.88754 1.45722 1.12863 1.56796 1.20446 1.17586 0.82102 0.79059 0.85506 1.90852 1.60472 1.56746 1.31643 1.22210 0.93948 1.00461 0.94515 1.23903 0.92841 0.90513 0.97568 1.68666 1.36178 1.10463 1.00031 1.24174 0.92328 0.95531 0.96762 1.23888 0.94935 0.94782 0.97594 1.68334 1.36304 1.09120 0.99395 0.97088 0.93910 0.90929 0.95201 0.99428 0.93003 0.92133 0.95192 0.79420 0.90862 0.94450 0.83322 0.90407 0.94715 0.90871 0.89725 0.75408 0.79838 0.80518 0.80376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.31 60.07 0.56 1.36 16 2 N -0.53 -11.38 4.59 -244.37 -1.12 -12.50 16 3 C 0.19 5.04 4.55 -4.98 -0.02 5.01 16 4 C -0.50 -14.38 8.58 -34.44 -0.30 -14.68 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.93 13.29 55.43 0.74 -26.19 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 C 0.03 0.44 4.65 -3.82 -0.02 0.42 16 13 C 0.12 1.85 3.25 -26.73 -0.09 1.76 16 14 H 0.10 1.88 6.73 -51.93 -0.35 1.53 16 15 O -0.53 -8.92 13.11 -35.23 -0.46 -9.38 16 16 C 0.03 0.35 5.35 -3.82 -0.02 0.32 16 17 N -0.67 -7.51 6.37 -113.78 -0.72 -8.23 16 18 C 0.05 0.42 5.80 -3.83 -0.02 0.39 16 19 C 0.12 1.07 5.93 -4.04 -0.02 1.05 16 20 N -0.71 -5.94 5.55 -61.15 -0.34 -6.28 16 21 C 0.57 5.82 7.81 -12.19 -0.10 5.73 16 22 O -0.52 -6.86 16.35 5.35 0.09 -6.77 16 23 C 0.03 0.25 6.75 -82.84 -0.56 -0.31 16 24 C 0.11 0.89 10.77 -17.00 -0.18 0.70 16 25 N -0.44 -3.23 10.49 -12.71 -0.13 -3.36 16 26 C 0.07 0.32 11.23 -17.24 -0.19 0.12 16 27 C 0.05 0.21 11.22 -17.38 -0.20 0.02 16 28 N -0.41 -2.89 9.71 -9.61 -0.09 -2.98 16 29 H 0.01 0.21 8.08 -51.93 -0.42 -0.21 16 30 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 31 H 0.07 1.50 7.01 -51.93 -0.36 1.14 16 32 H 0.03 0.83 6.60 -51.93 -0.34 0.48 16 33 H -0.01 -0.33 8.07 -51.92 -0.42 -0.75 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 0.86 7.75 -51.93 -0.40 0.46 16 36 H 0.03 0.51 8.00 -51.93 -0.42 0.10 16 37 H 0.36 4.70 9.05 45.56 0.41 5.11 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.35 4.03 8.73 -39.29 -0.34 3.68 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.41 2.75 7.82 -40.82 -0.32 2.43 16 46 H 0.18 1.33 7.65 -52.49 -0.40 0.93 16 47 H 0.18 0.12 8.06 -52.49 -0.42 -0.30 16 48 H 0.18 0.11 8.06 -52.49 -0.42 -0.31 16 LS Contribution 404.69 15.07 6.10 6.10 Total: -1.00 -35.35 404.69 -8.89 -44.23 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.66 Total: 5.04 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -1.25 Total: 3.37 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -1.68 Total: -59.56 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.37 Total: -16.15 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.35 -8.89 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566110557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.637 kcal (2) G-P(sol) polarization free energy of solvation -35.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds