Wall clock time and date at job start Tue Mar 31 2020 21:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 N 1.46502 * 109.46880 * 180.02562 * 19 18 17 21 21 C 1.34778 * 119.99407 * 180.02562 * 20 19 18 22 22 O 1.21516 * 120.00384 * 359.97438 * 21 20 19 23 23 C 1.48151 * 119.99753 * 179.97438 * 21 20 19 24 24 C 1.39440 * 120.09777 * 179.97438 * 23 21 20 25 25 N 1.32077 * 119.87400 * 180.02562 * 24 23 21 26 26 C 1.32141 * 120.07374 * 0.02562 * 25 24 23 27 27 C 1.38731 * 120.19295 * 359.97438 * 26 25 24 28 28 N 1.31802 * 120.12477 * 359.72665 * 27 26 25 29 29 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 30 30 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 31 31 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 32 32 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 33 33 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 34 34 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 36 36 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 37 37 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 38 38 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 39 39 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 40 40 H 1.00899 * 110.99633 * 303.95531 * 17 16 13 41 41 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 42 42 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 43 43 H 1.08996 * 109.46769 * 300.00011 * 19 18 17 44 44 H 1.08997 * 109.47063 * 59.99835 * 19 18 17 45 45 H 0.97003 * 120.00285 * 0.02562 * 20 19 18 46 46 H 1.07997 * 120.06207 * 359.97438 * 24 23 21 47 47 H 1.07995 * 119.90511 * 180.02562 * 26 25 24 48 48 H 1.07995 * 119.93649 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 7 8.0039 -4.1253 -3.7543 21 6 9.2778 -4.5621 -3.7001 22 8 9.9489 -4.3566 -2.7082 23 6 9.8598 -5.2927 -4.8500 24 6 11.1777 -5.7450 -4.7964 25 7 11.6923 -6.3955 -5.8243 26 6 10.9600 -6.6169 -6.9017 27 6 9.6485 -6.1681 -6.9582 28 7 9.1253 -5.5234 -5.9346 29 1 -0.3633 0.5899 -0.8415 30 1 -0.3633 -1.0237 -0.0902 31 1 -0.3633 0.4337 0.9316 32 1 3.0797 1.3443 -0.1083 33 1 1.5612 1.9273 -0.8310 34 1 2.9876 4.9176 0.7775 35 1 1.3932 -1.6630 -1.2815 36 1 1.9552 -0.1531 -2.0382 37 1 2.9842 -2.8273 0.2040 38 1 3.4165 -2.8115 -2.2453 39 1 3.9750 -1.2717 -2.9420 40 1 5.9612 -1.4912 -1.5593 41 1 5.4001 -3.9264 -3.1222 42 1 5.9579 -2.3862 -3.8184 43 1 8.0083 -2.4998 -2.4293 44 1 7.4512 -4.0400 -1.7326 45 1 7.4683 -4.2890 -4.5463 46 1 11.7768 -5.5631 -3.9164 47 1 11.3834 -7.1494 -7.7404 48 1 9.0538 -6.3509 -7.8409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566110557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:28 Heat of formation + Delta-G solvation = -57.555046 kcal Electronic energy + Delta-G solvation = -27497.025775 eV Core-core repulsion = 23393.057540 eV Total energy + Delta-G solvation = -4103.968236 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32241 -40.50035 -39.52004 -37.74382 -36.77514 -35.70981 -35.02043 -34.59731 -32.86590 -31.54856 -29.68309 -29.08859 -26.98524 -26.18818 -25.56904 -24.94840 -23.21025 -22.85912 -22.08271 -21.65846 -19.38530 -18.70752 -18.59593 -17.84539 -17.62217 -17.18758 -16.94214 -16.77294 -16.61079 -16.27206 -16.00100 -15.99045 -15.64278 -15.39446 -15.13868 -14.95728 -14.62433 -14.46876 -14.06829 -13.93319 -13.87877 -13.34333 -13.06728 -12.94462 -12.84507 -12.62631 -12.54416 -12.48425 -12.46169 -12.41445 -12.31106 -12.12275 -11.65625 -11.51044 -11.31705 -10.67396 -10.61582 -10.60212 -10.26064 -10.22896 -9.41197 -8.92530 -8.20720 -6.29782 -0.73129 -0.05790 1.40022 1.42473 1.52779 1.54515 1.77031 2.40476 2.67054 2.78628 3.04515 3.12283 3.16467 3.34457 3.48852 3.71132 3.75597 3.89329 3.96573 4.06236 4.08175 4.23820 4.29948 4.38930 4.43060 4.50403 4.51360 4.58383 4.62702 4.76932 4.80007 4.85068 4.89546 5.08816 5.12626 5.18490 5.24046 5.25651 5.31714 5.65454 5.95082 5.97919 6.07671 6.26827 6.28156 6.36238 6.58671 6.67418 6.86344 6.94722 7.17635 7.39742 8.90290 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022134 B = 0.001501 C = 0.001452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.714082 B =18653.069600 C =19280.381026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.264 1.264 12 C 0.026 3.974 13 C 0.124 3.876 14 H 0.058 0.942 15 O -0.553 6.553 16 C 0.045 3.955 17 N -0.687 5.687 18 C 0.059 3.941 19 C 0.124 3.876 20 N -0.695 5.695 21 C 0.571 3.429 22 O -0.563 6.563 23 C 0.010 3.990 24 C 0.099 3.901 25 N -0.463 5.463 26 C 0.085 3.915 27 C 0.060 3.940 28 N -0.425 5.425 29 H 0.007 0.993 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.004 0.996 33 H -0.041 1.041 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.378 0.622 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.342 0.658 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.420 0.580 46 H 0.177 0.823 47 H 0.219 0.781 48 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.765 -24.260 -20.823 33.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.267 5.267 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.188 1.188 12 C -0.103 4.103 13 C 0.063 3.937 14 H 0.076 0.924 15 O -0.358 6.358 16 C -0.085 4.085 17 N -0.319 5.319 18 C -0.070 4.070 19 C 0.000 4.000 20 N -0.346 5.346 21 C 0.356 3.644 22 O -0.442 6.442 23 C -0.129 4.129 24 C -0.059 4.059 25 N -0.177 5.177 26 C -0.077 4.077 27 C -0.104 4.104 28 N -0.143 5.143 29 H 0.026 0.974 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.022 0.978 33 H -0.023 1.023 34 H 0.072 0.928 35 H 0.117 0.883 36 H 0.046 0.954 37 H 0.226 0.774 38 H 0.116 0.884 39 H 0.062 0.938 40 H 0.159 0.841 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.258 0.742 46 H 0.194 0.806 47 H 0.235 0.765 48 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 11.637 -24.230 -19.060 32.951 hybrid contribution -0.666 1.721 -1.088 2.142 sum 10.971 -22.509 -20.147 32.139 Atomic orbital electron populations 1.22210 0.87463 1.00920 0.99954 1.61916 1.07885 1.15076 1.41856 1.19382 0.93712 0.83909 0.94616 1.21504 1.34708 0.97467 1.02540 0.92179 1.25901 0.95066 0.98090 1.00642 1.70076 1.39483 1.11871 1.36103 0.85401 0.78943 0.77290 0.79102 1.20127 1.20612 1.18782 1.22815 0.97119 0.98634 0.91729 1.21678 0.94057 0.92258 0.85689 0.92356 1.86646 1.74826 1.35254 1.39071 1.22521 0.89811 1.00169 0.96015 1.60217 1.02896 1.30448 1.38312 1.22017 0.93209 0.99696 0.92123 1.21246 0.93646 0.96544 0.88612 1.45609 1.12501 1.56045 1.20489 1.17924 0.82181 0.78698 0.85612 1.90819 1.61477 1.58505 1.33365 1.21853 0.94259 1.01938 0.94824 1.23822 0.92847 0.91222 0.98012 1.68697 1.37131 1.11084 1.00818 1.24933 0.92257 0.93966 0.96524 1.24644 0.95294 0.92772 0.97705 1.68327 1.36467 1.09877 0.99598 0.97402 0.89769 0.92936 0.97812 1.02298 0.92761 0.88318 0.95389 0.77401 0.88352 0.93826 0.84067 0.88872 0.93506 0.92090 0.91244 0.74183 0.80598 0.76480 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.31 127.69 1.19 2.80 16 2 N -0.54 -23.30 4.59 -927.06 -4.25 -27.56 16 3 C 0.21 11.37 4.55 85.56 0.39 11.76 16 4 C -0.52 -30.59 8.58 25.60 0.22 -30.37 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 0.04 5.46 84.66 0.46 0.51 16 7 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 9 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 12 C 0.03 0.85 4.65 86.30 0.40 1.25 16 13 C 0.12 3.86 3.25 30.59 0.10 3.96 16 14 H 0.06 2.31 6.73 -2.39 -0.02 2.30 16 15 O -0.55 -18.26 13.11 -148.98 -1.95 -20.21 16 16 C 0.04 0.97 5.35 86.30 0.46 1.43 16 17 N -0.69 -14.83 6.37 -513.89 -3.27 -18.11 16 18 C 0.06 0.92 5.80 86.31 0.50 1.43 16 19 C 0.12 2.29 5.93 86.38 0.51 2.80 16 20 N -0.69 -11.65 5.55 -465.67 -2.58 -14.24 16 21 C 0.57 12.13 7.81 86.88 0.68 12.81 16 22 O -0.56 -15.97 16.35 -3.77 -0.06 -16.03 16 23 C 0.01 0.17 6.75 41.89 0.28 0.46 16 24 C 0.10 1.64 10.77 84.95 0.92 2.56 16 25 N -0.46 -6.37 10.49 -194.13 -2.04 -8.41 16 26 C 0.09 0.49 11.23 84.76 0.95 1.44 16 27 C 0.06 0.31 11.22 84.82 0.95 1.27 16 28 N -0.42 -5.25 9.71 -184.33 -1.79 -7.04 16 29 H 0.01 0.28 8.08 -2.39 -0.02 0.27 16 30 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 31 H 0.05 2.16 7.01 -2.39 -0.02 2.14 16 32 H 0.00 0.22 6.60 -2.39 -0.02 0.21 16 33 H -0.04 -2.37 8.07 -2.38 -0.02 -2.39 16 34 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 35 H 0.10 2.46 7.75 -2.39 -0.02 2.44 16 36 H 0.03 0.93 8.00 -2.39 -0.02 0.91 16 37 H 0.38 9.11 9.05 -74.06 -0.67 8.44 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.34 8.13 8.73 -89.70 -0.78 7.34 16 41 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.42 5.19 7.82 -92.71 -0.73 4.46 16 46 H 0.18 2.94 7.65 -2.91 -0.02 2.92 16 47 H 0.22 -0.68 8.06 -2.91 -0.02 -0.70 16 48 H 0.22 -0.82 8.06 -2.91 -0.02 -0.84 16 Total: -1.00 -80.40 404.69 -6.80 -87.20 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -1.18 Total: 19.73 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 8.02 Total: 14.08 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -13.65 Total: -132.28 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.01 Total: -36.24 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -80.40 -6.80 -87.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566110557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.647 kcal (2) G-P(sol) polarization free energy of solvation -80.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds