Wall clock time and date at job start Tue Mar 31 2020 20:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47234 * 59.99818 * 9 7 5 11 11 H 1.48496 * 109.47421 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47400 * 299.99989 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 N 1.46499 * 109.57798 * 177.59650 * 19 18 17 21 21 C 1.36599 * 127.11506 * 299.96821 * 20 19 18 22 22 N 1.30331 * 107.28042 * 179.89505 * 21 20 19 23 23 N 1.28533 * 109.99346 * 0.38208 * 22 21 20 24 24 C 1.31031 * 109.86161 * 359.75566 * 23 22 21 25 25 O 1.35535 * 126.45525 * 180.02562 * 24 23 22 26 26 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 27 27 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 28 28 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 30 30 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 31 31 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 32 32 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 33 33 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 34 34 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 35 35 H 0.97003 * 119.99477 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 37 37 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 38 38 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 39 39 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 40 40 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 41 41 H 1.09001 * 109.53777 * 60.78384 * 18 17 16 42 42 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 43 43 H 1.07999 * 126.36103 * 0.03661 * 21 20 19 44 44 H 0.96697 * 114.00083 * 270.00560 * 25 24 23 45 45 H 1.08998 * 109.50798 * 182.40542 * 26 19 18 46 46 H 1.09003 * 109.53309 * 62.30609 * 26 19 18 47 47 H 1.08998 * 109.46100 * 294.17598 * 27 16 15 48 48 H 1.08996 * 109.46187 * 54.15260 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 3.3490 3.1257 3.6181 9 14 5.9130 2.0955 3.4177 10 1 6.8410 2.6188 2.3831 11 1 6.1605 2.7956 4.7036 12 1 6.1401 0.6387 3.5950 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 7 1.7912 4.6333 -7.0394 21 6 2.9301 5.3831 -7.1215 22 7 2.8296 6.1241 -8.1890 23 7 1.7086 5.8992 -8.7762 24 6 1.0327 4.9933 -8.1133 25 8 -0.1903 4.5056 -8.4349 26 6 1.4270 4.3347 -4.6377 27 6 1.1311 3.2919 -3.5573 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0956 3.1410 1.1384 34 1 1.5817 1.6877 2.0284 35 1 3.6749 3.5156 4.4443 36 1 2.6980 0.4833 -2.5802 37 1 0.9740 0.9153 -2.4830 38 1 2.9316 0.7609 -4.8524 39 1 1.1971 1.1045 -5.0552 40 1 2.4970 2.0186 -6.9522 41 1 3.4894 2.9701 -5.8212 42 1 0.4723 3.2229 -6.2190 43 1 3.7607 5.3636 -6.4315 44 1 -0.9253 5.0000 -8.0471 45 1 0.6507 5.0997 -4.6274 46 1 2.3952 4.7959 -4.4427 47 1 0.1564 2.8414 -3.7446 48 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568828089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:23 Heat of formation + Delta-G solvation = 21.442462 kcal Electronic energy + Delta-G solvation = -29852.818340 eV Core-core repulsion = 25752.275694 eV Total energy + Delta-G solvation = -4100.542647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.32284 -39.91715 -38.55458 -37.99755 -35.69214 -35.15600 -32.88721 -31.94629 -31.28475 -30.17397 -30.09769 -28.29205 -26.44227 -24.39732 -23.62760 -23.10140 -22.85527 -22.48205 -21.94489 -19.99719 -19.25816 -18.42162 -17.48104 -16.69959 -16.58402 -16.35554 -15.96693 -15.70426 -15.46231 -15.10299 -14.81402 -14.65732 -14.34243 -14.09776 -13.89436 -13.62952 -13.42374 -13.08562 -12.82769 -12.65515 -12.47851 -12.25377 -12.05834 -11.91502 -11.68458 -11.62399 -11.49928 -11.29217 -11.26323 -11.08640 -10.96787 -10.79295 -10.57310 -10.50627 -10.27029 -10.16521 -9.68498 -9.47503 -9.01090 -8.46934 -8.38743 -7.71674 -6.08226 -4.12982 1.30621 1.82388 2.50639 3.28888 3.32113 3.34076 3.37353 3.39168 3.42896 3.94799 4.04156 4.23372 4.33063 4.41832 4.45611 4.72340 4.87727 4.88637 4.96449 5.02105 5.04633 5.18425 5.21926 5.25854 5.28223 5.33582 5.36982 5.46663 5.49544 5.55224 5.59676 5.66529 5.67293 5.85271 5.92320 5.93830 6.14210 6.22716 6.37140 6.72163 6.89264 6.97149 7.04662 7.38298 7.49359 7.88149 8.19131 8.36235 8.38407 8.86113 9.05091 9.52397 10.99809 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.002481 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.081236 B =11282.170612 C =12192.612777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.505 3.495 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.520 5.520 17 C 0.061 3.939 18 C -0.122 4.122 19 C 0.134 3.866 20 N -0.477 5.477 21 C 0.174 3.826 22 N -0.285 5.285 23 N -0.288 5.288 24 C 0.343 3.657 25 O -0.439 6.439 26 C -0.121 4.121 27 C 0.058 3.942 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.264 0.736 36 H 0.100 0.900 37 H 0.057 0.943 38 H 0.086 0.914 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.225 0.775 44 H 0.405 0.595 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.030 0.970 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 -5.107 -17.614 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.291 3.709 14 O -0.399 6.399 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.068 4.068 18 C -0.161 4.161 19 C 0.031 3.969 20 N -0.179 5.179 21 C -0.113 4.113 22 N -0.126 5.126 23 N -0.140 5.140 24 C 0.038 3.962 25 O -0.238 6.238 26 C -0.159 4.159 27 C -0.070 4.070 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.105 0.895 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.241 0.759 44 H 0.262 0.738 45 H 0.092 0.908 46 H 0.107 0.893 47 H 0.048 0.952 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.811 -3.626 -18.776 20.656 hybrid contribution -0.558 -1.433 1.657 2.261 sum -8.369 -5.059 -17.118 19.715 Atomic orbital electron populations 1.22224 0.96901 1.01395 1.02180 1.21399 0.93382 0.84362 1.02651 1.48283 1.63935 1.13225 1.07746 1.19241 0.96249 0.93543 0.78028 1.21384 0.96914 1.31969 1.06244 0.92549 1.24930 0.97840 0.94903 0.96396 1.69921 1.35753 1.33407 1.14360 0.86565 0.84814 0.78230 0.77855 1.20132 1.21191 1.20282 1.20090 0.79008 0.87184 0.84657 1.90661 1.44607 1.17822 1.86790 1.22078 1.01296 0.95270 0.90695 1.61521 1.48729 1.12956 1.01239 1.22039 1.00777 0.95711 0.88281 1.21956 0.99367 0.95726 0.99037 1.21761 1.00625 0.88040 0.86448 1.47208 1.16907 1.32763 1.21045 1.26404 0.92164 0.92639 1.00103 1.74260 1.11686 1.20971 1.05733 1.74599 1.02119 1.13026 1.24206 1.22171 0.89641 0.96408 0.87982 1.84895 1.10802 1.55629 1.72474 1.21964 1.04439 0.98301 0.91225 1.22142 0.91344 0.92611 1.00885 0.92174 0.91958 0.93360 0.91942 0.89863 0.93970 0.95120 0.92656 0.88213 0.92508 0.89526 0.94535 0.90559 0.89533 0.87948 0.75882 0.73762 0.90786 0.89305 0.95163 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.18 37.16 0.38 -1.62 16 2 C 0.11 1.53 5.84 -4.04 -0.02 1.51 16 3 N -0.60 -11.61 2.46 -175.07 -0.43 -12.04 16 4 C 0.25 6.18 5.16 -5.20 -0.03 6.15 16 5 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 C 0.51 9.43 7.20 -10.99 -0.08 9.35 16 14 O -0.52 -12.01 14.29 5.55 0.08 -11.93 16 15 C 0.04 0.48 3.91 -4.98 -0.02 0.46 16 16 N -0.52 -6.09 4.35 -236.12 -1.03 -7.12 16 17 C 0.06 0.50 5.46 -3.83 -0.02 0.48 16 18 C -0.12 -0.93 5.47 -26.65 -0.15 -1.07 16 19 C 0.13 1.03 2.96 -67.81 -0.20 0.83 16 20 N -0.48 -4.39 2.65 -112.49 -0.30 -4.69 16 21 C 0.17 1.73 11.82 -89.08 -1.05 0.68 16 22 N -0.29 -3.76 12.18 29.87 0.36 -3.40 16 23 N -0.29 -3.92 12.22 29.65 0.36 -3.56 16 24 C 0.34 3.66 9.22 -88.76 -0.82 2.84 16 25 O -0.44 -3.50 13.43 -18.30 -0.25 -3.74 16 26 C -0.12 -1.09 5.47 -26.65 -0.15 -1.24 16 27 C 0.06 0.65 5.12 -3.83 -0.02 0.63 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.53 7.12 -51.93 -0.37 0.16 16 31 H 0.06 0.72 6.61 -51.93 -0.34 0.38 16 32 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.04 1.19 7.42 -51.93 -0.39 0.81 16 34 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.10 1.14 7.55 -51.93 -0.39 0.74 16 37 H 0.06 0.61 6.83 -51.93 -0.35 0.25 16 38 H 0.09 0.66 8.01 -51.93 -0.42 0.25 16 39 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.71 7.93 -51.93 -0.41 0.30 16 42 H 0.10 0.69 7.91 -51.93 -0.41 0.28 16 43 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 44 H 0.41 1.15 9.06 45.56 0.41 1.57 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.92 7.92 -51.93 -0.41 0.51 16 47 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.10 1.54 6.06 -51.93 -0.31 1.22 16 LS Contribution 389.97 15.07 5.88 5.88 Total: -1.00 -35.86 389.97 -8.94 -44.79 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -6.74 Total: -1.15 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.60 Total: 5.85 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.29 Total: -56.12 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.17 Total: -15.67 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.86 -8.94 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.237 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds