Wall clock time and date at job start Tue Mar 31 2020 20:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.46965 * 2 1 4 4 C 1.46495 * 120.00130 * 90.00260 * 3 2 1 5 5 C 1.50698 * 109.47550 * 89.99540 * 4 3 2 6 6 H 1.07999 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00390 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99588 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00378 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47234 * 59.99818 * 9 7 5 11 11 H 1.48496 * 109.47421 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47400 * 299.99989 * 9 7 5 13 13 C 1.34779 * 119.99884 * 269.99334 * 3 2 1 14 14 O 1.21284 * 119.99951 * 180.02562 * 13 3 2 15 15 C 1.50694 * 120.00208 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47527 * 173.74550 * 15 13 3 17 17 C 1.46847 * 111.00327 * 169.40463 * 16 15 13 18 18 C 1.53039 * 109.52144 * 185.84111 * 17 16 15 19 19 C 1.53112 * 109.28098 * 300.81810 * 18 17 16 20 20 N 1.46499 * 109.57798 * 177.59650 * 19 18 17 21 21 C 1.36599 * 127.11506 * 299.96821 * 20 19 18 22 22 N 1.30331 * 107.28042 * 179.89505 * 21 20 19 23 23 N 1.28533 * 109.99346 * 0.38208 * 22 21 20 24 24 C 1.31031 * 109.86161 * 359.75566 * 23 22 21 25 25 O 1.35535 * 126.45525 * 180.02562 * 24 23 22 26 26 C 1.53117 * 109.16182 * 57.65453 * 19 18 17 27 27 C 1.46852 * 110.99994 * 293.61539 * 16 15 13 28 28 H 1.08998 * 109.47562 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47363 * 300.00368 * 1 2 3 30 30 H 1.09007 * 109.46745 * 60.00513 * 1 2 3 31 31 H 1.09000 * 109.46724 * 239.99390 * 2 1 3 32 32 H 1.08998 * 109.46697 * 120.00331 * 2 1 3 33 33 H 1.09000 * 109.47560 * 209.99688 * 4 3 2 34 34 H 1.09002 * 109.47315 * 329.99586 * 4 3 2 35 35 H 0.97003 * 119.99477 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47428 * 293.74826 * 15 13 3 37 37 H 1.09003 * 109.47076 * 53.74376 * 15 13 3 38 38 H 1.09000 * 109.45958 * 305.85739 * 17 16 15 39 39 H 1.09001 * 109.46219 * 65.82297 * 17 16 15 40 40 H 1.08999 * 109.49784 * 180.87485 * 18 17 16 41 41 H 1.09001 * 109.53777 * 60.78384 * 18 17 16 42 42 H 1.09004 * 109.51956 * 297.75405 * 19 18 17 43 43 H 1.07999 * 126.36103 * 0.03661 * 21 20 19 44 44 H 0.96697 * 114.00083 * 270.00560 * 25 24 23 45 45 H 1.08998 * 109.50798 * 182.40542 * 26 19 18 46 46 H 1.09003 * 109.53309 * 62.30609 * 26 19 18 47 47 H 1.08998 * 109.46100 * 294.17598 * 27 16 15 48 48 H 1.08996 * 109.46187 * 54.15260 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 3.6857 1.8350 1.7038 6 1 4.3426 1.2302 1.0963 7 6 4.1491 2.3896 2.8780 8 7 3.3490 3.1257 3.6181 9 14 5.9130 2.0955 3.4177 10 1 6.8410 2.6188 2.3831 11 1 6.1605 2.7956 4.7036 12 1 6.1401 0.6387 3.5950 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9915 1.3062 -2.4723 16 7 2.1653 2.2497 -3.5847 17 6 2.1767 1.5469 -4.8740 18 6 2.5039 2.5376 -5.9937 19 6 1.4524 3.6505 -6.0072 20 7 1.7912 4.6333 -7.0394 21 6 2.9301 5.3831 -7.1215 22 7 2.8296 6.1241 -8.1890 23 7 1.7086 5.8992 -8.7762 24 6 1.0327 4.9933 -8.1133 25 8 -0.1903 4.5056 -8.4349 26 6 1.4270 4.3347 -4.6377 27 6 1.1311 3.2919 -3.5573 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 2.0956 3.1410 1.1384 34 1 1.5817 1.6877 2.0284 35 1 3.6749 3.5156 4.4443 36 1 2.6980 0.4833 -2.5802 37 1 0.9740 0.9153 -2.4830 38 1 2.9316 0.7609 -4.8524 39 1 1.1971 1.1045 -5.0552 40 1 2.4970 2.0186 -6.9522 41 1 3.4894 2.9701 -5.8212 42 1 0.4723 3.2229 -6.2190 43 1 3.7607 5.3636 -6.4315 44 1 -0.9253 5.0000 -8.0471 45 1 0.6507 5.0997 -4.6274 46 1 2.3952 4.7959 -4.4427 47 1 0.1564 2.8414 -3.7446 48 1 1.1266 3.7735 -2.5795 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568828089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:16:21 Heat of formation + Delta-G solvation = -6.245584 kcal Electronic energy + Delta-G solvation = -29854.018984 eV Core-core repulsion = 25752.275694 eV Total energy + Delta-G solvation = -4101.743290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.11451 -41.04323 -39.64515 -38.64341 -36.94357 -36.26321 -34.88855 -32.84589 -31.98693 -31.55722 -30.91676 -29.69491 -27.87573 -25.47841 -24.56162 -24.34648 -23.89328 -23.45280 -22.87495 -20.70808 -19.93549 -19.83565 -18.59859 -18.23162 -17.80715 -17.45508 -17.13320 -16.52012 -16.50394 -16.39343 -15.84943 -15.69700 -15.47243 -15.13677 -14.73137 -14.64294 -14.54123 -14.30846 -14.06536 -13.65062 -13.43885 -13.32474 -13.19055 -13.15089 -13.03449 -12.83400 -12.63846 -12.49057 -12.31468 -12.27157 -12.16517 -12.09746 -11.87743 -11.79907 -11.69719 -11.28308 -11.01279 -10.62863 -10.45049 -10.30476 -9.39965 -9.20619 -8.20909 -6.35408 0.58475 1.10493 1.37124 1.41241 1.48253 1.68518 1.93322 2.25097 2.42178 2.73432 2.95028 3.08700 3.32971 3.56474 3.64564 3.74963 3.82422 4.08865 4.14137 4.19446 4.20780 4.23422 4.30854 4.41341 4.45605 4.48586 4.56214 4.65625 4.72323 4.74060 4.82630 4.92900 4.95140 5.00189 5.01454 5.03892 5.08202 5.21861 5.24669 5.40263 5.60434 5.61603 5.86335 5.95689 6.09233 6.15142 6.42881 6.73478 6.89535 7.31513 7.56708 7.60082 8.85541 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016883 B = 0.002481 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.081236 B =11282.170612 C =12192.612777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.260 1.260 13 C 0.495 3.505 14 O -0.578 6.578 15 C 0.053 3.947 16 N -0.543 5.543 17 C 0.064 3.936 18 C -0.119 4.119 19 C 0.144 3.856 20 N -0.472 5.472 21 C 0.181 3.819 22 N -0.323 5.323 23 N -0.333 5.333 24 C 0.353 3.647 25 O -0.439 6.439 26 C -0.113 4.113 27 C 0.063 3.937 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.068 0.932 33 H -0.005 1.005 34 H 0.018 0.982 35 H 0.266 0.734 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.248 0.752 44 H 0.428 0.572 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.397 -7.990 -19.241 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.789 3.211 10 H -0.203 1.203 11 H -0.206 1.206 12 H -0.184 1.184 13 C 0.283 3.717 14 O -0.458 6.458 15 C -0.077 4.077 16 N -0.269 5.269 17 C -0.064 4.064 18 C -0.157 4.157 19 C 0.041 3.959 20 N -0.174 5.174 21 C -0.107 4.107 22 N -0.164 5.164 23 N -0.183 5.183 24 C 0.047 3.953 25 O -0.241 6.241 26 C -0.152 4.152 27 C -0.066 4.066 28 H 0.113 0.887 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.013 0.987 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.141 0.859 43 H 0.263 0.737 44 H 0.289 0.711 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.280 -6.554 -20.428 22.996 hybrid contribution -0.502 -0.534 2.177 2.297 sum -8.783 -7.088 -18.251 21.459 Atomic orbital electron populations 1.22149 0.94740 1.03387 1.01536 1.21721 0.95136 0.81486 1.03892 1.48304 1.64307 1.15103 1.06248 1.18618 0.94999 0.91425 0.80604 1.21693 0.97997 1.31760 1.06345 0.92854 1.25842 1.02216 0.94582 0.96552 1.70047 1.37776 1.34352 1.14812 0.85512 0.79279 0.79003 0.77298 1.20330 1.20583 1.18441 1.21259 0.77399 0.86770 0.86269 1.90634 1.46899 1.20473 1.87754 1.21961 1.03545 0.94872 0.87316 1.61429 1.49482 1.13488 1.02501 1.22109 1.02450 0.95658 0.86147 1.21935 0.98740 0.95542 0.99479 1.21779 1.01780 0.87410 0.84901 1.47239 1.16402 1.32808 1.20919 1.26856 0.92720 0.91693 0.99419 1.74172 1.12285 1.22666 1.07260 1.74492 1.02958 1.15049 1.25827 1.22172 0.90242 0.95273 0.87583 1.84860 1.10525 1.55902 1.72859 1.21839 1.03618 0.97996 0.91714 1.21985 0.92514 0.92916 0.99137 0.88744 0.94586 0.92068 0.87938 0.91342 0.98713 0.96404 0.92512 0.85988 0.89425 0.88434 0.92211 0.89263 0.90471 0.85914 0.73657 0.71069 0.90244 0.91161 0.92839 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.18 71.98 0.73 -2.68 16 2 C 0.10 2.70 5.84 86.38 0.50 3.20 16 3 N -0.61 -23.79 2.46 -826.18 -2.03 -25.82 16 4 C 0.27 13.88 5.16 85.63 0.44 14.32 16 5 C -0.54 -30.45 9.39 25.60 0.24 -30.21 16 6 H 0.05 2.97 7.81 -2.91 -0.02 2.94 16 7 C 0.01 0.39 5.46 84.65 0.46 0.85 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.59 16 9 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 C 0.49 18.49 7.20 87.65 0.63 19.12 16 14 O -0.58 -27.81 14.29 -3.04 -0.04 -27.85 16 15 C 0.05 1.21 3.91 85.56 0.33 1.54 16 16 N -0.54 -11.45 4.35 -900.94 -3.92 -15.37 16 17 C 0.06 0.79 5.46 86.33 0.47 1.26 16 18 C -0.12 -1.41 5.47 30.64 0.17 -1.24 16 19 C 0.14 1.79 2.96 45.07 0.13 1.93 16 20 N -0.47 -7.79 2.65 -620.62 -1.65 -9.43 16 21 C 0.18 3.45 11.82 179.81 2.13 5.58 16 22 N -0.32 -8.51 12.18 -59.40 -0.72 -9.23 16 23 N -0.33 -8.93 12.22 -173.67 -2.12 -11.06 16 24 C 0.35 6.97 9.22 179.70 1.66 8.63 16 25 O -0.44 -5.87 13.43 -88.39 -1.19 -7.06 16 26 C -0.11 -1.90 5.47 30.65 0.17 -1.73 16 27 C 0.06 1.31 5.12 86.33 0.44 1.75 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.15 7.12 -2.38 -0.02 1.13 16 31 H 0.10 1.95 6.61 -2.39 -0.02 1.94 16 32 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 33 H -0.01 -0.32 7.42 -2.39 -0.02 -0.34 16 34 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.12 2.25 7.55 -2.39 -0.02 2.23 16 37 H 0.09 1.46 6.83 -2.39 -0.02 1.45 16 38 H 0.10 1.04 8.01 -2.39 -0.02 1.02 16 39 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.09 7.93 -2.39 -0.02 1.07 16 42 H 0.12 1.12 7.91 -2.38 -0.02 1.10 16 43 H 0.25 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.43 1.26 9.06 -74.06 -0.67 0.59 16 45 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 47 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.06 1.82 6.06 -2.39 -0.01 1.81 16 Total: -1.00 -84.04 389.97 -0.54 -84.58 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.30 Total: 8.10 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: 8.51 Total: 22.31 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -10.15 Total: -126.50 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.23 Total: -34.91 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -84.04 -0.54 -84.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568828089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.337 kcal (2) G-P(sol) polarization free energy of solvation -84.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds