Wall clock time and date at job start Tue Mar 31 2020 20:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99649 * 2 1 4 4 C 1.38494 * 111.00622 * 123.95785 * 2 1 3 5 5 N 1.31204 * 125.78760 * 0.02562 * 4 2 1 6 6 C 1.34383 * 109.30095 * 179.97438 * 5 4 2 7 7 C 1.34377 * 108.32485 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.53149 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47340 * 95.03604 * 8 7 6 10 10 C 1.34779 * 119.99852 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99852 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99680 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.65096 * 359.69318 * 12 10 9 14 14 C 1.55128 * 104.72171 * 155.81484 * 13 12 10 15 15 C 1.55160 * 101.48722 * 37.29736 * 14 13 12 16 16 O 1.42898 * 110.71951 * 82.69034 * 15 14 13 17 17 C 1.50695 * 110.87576 * 205.89643 * 15 14 13 18 18 H 1.08005 * 119.99533 * 355.06555 * 17 15 14 19 19 C 1.37875 * 120.00209 * 175.06407 * 17 15 14 20 20 N 1.31513 * 119.99960 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99926 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47253 * 89.99830 * 21 19 17 23 23 H 1.48501 * 109.46931 * 209.99929 * 21 19 17 24 24 H 1.48493 * 109.47160 * 329.99687 * 21 19 17 25 25 C 1.47027 * 125.64633 * 180.02562 * 12 10 9 26 26 N 1.36024 * 125.79188 * 180.02562 * 4 2 1 27 27 C 1.46492 * 126.49414 * 0.05613 * 26 4 2 28 28 H 1.08994 * 109.46744 * 296.03614 * 1 2 3 29 29 H 1.08992 * 109.47504 * 56.04729 * 1 2 3 30 30 H 1.09003 * 109.46426 * 176.04610 * 1 2 3 31 31 H 1.08997 * 109.47171 * 183.95605 * 3 2 1 32 32 H 1.08994 * 109.47163 * 303.95923 * 3 2 1 33 33 H 1.09001 * 109.46489 * 63.95658 * 3 2 1 34 34 H 1.08009 * 125.83589 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47020 * 215.03769 * 8 7 6 36 36 H 1.09007 * 109.46686 * 335.03361 * 8 7 6 37 37 H 0.96997 * 119.99744 * 359.97438 * 9 8 7 38 38 H 1.09001 * 110.36642 * 274.74480 * 13 12 10 39 39 H 1.09003 * 110.36163 * 37.06898 * 13 12 10 40 40 H 1.08993 * 111.19522 * 279.19630 * 14 13 12 41 41 H 1.08996 * 110.90587 * 155.27497 * 14 13 12 42 42 H 0.96698 * 114.00165 * 185.02340 * 16 15 14 43 43 H 0.97001 * 120.00217 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.88058 * 300.44699 * 25 12 10 45 45 H 1.08997 * 109.87817 * 61.45034 * 25 12 10 46 46 H 1.08998 * 109.47532 * 89.97733 * 27 26 4 47 47 H 1.09008 * 109.46993 * 209.97341 * 27 26 4 48 48 H 1.09004 * 109.47426 * 329.97640 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9655 -0.7222 1.0724 5 7 1.2470 -1.3358 1.9827 6 6 2.0649 -1.9317 2.8668 7 6 3.3342 -1.6846 2.5013 8 6 4.5791 -2.1586 3.2060 9 7 5.0516 -3.3972 2.5825 10 6 6.1589 -4.0071 3.0499 11 8 6.7653 -3.5295 3.9894 12 7 6.5933 -5.1469 2.4766 13 6 5.9531 -5.8358 1.3413 14 6 7.0934 -6.6582 0.6855 15 6 7.8964 -7.1202 1.9302 16 8 7.3028 -8.2826 2.5120 17 6 9.3370 -7.3813 1.5733 18 1 9.6587 -7.3161 0.5443 19 6 10.2443 -7.7034 2.5602 20 7 9.8527 -7.7822 3.8131 21 14 12.0301 -8.0264 2.1177 22 1 12.7930 -6.7536 2.1775 23 1 12.6107 -8.9972 3.0799 24 1 12.1065 -8.5852 0.7440 25 6 7.7802 -5.9128 2.8843 26 7 3.2807 -0.9157 1.3606 27 6 4.4236 -0.4024 0.6015 28 1 -0.3632 0.4511 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3632 -1.0253 -0.0709 31 1 3.0827 1.3434 -0.0709 32 1 1.5897 1.9164 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.7550 -2.5097 3.7250 35 1 5.3531 -1.3949 3.1293 36 1 4.3539 -2.3434 4.2564 37 1 4.5675 -3.7783 1.8333 38 1 5.1615 -6.4960 1.6957 39 1 5.5541 -5.1096 0.6331 40 1 7.7058 -6.0338 0.0352 41 1 6.6926 -7.5125 0.1401 42 1 7.7207 -8.5669 3.3364 43 1 10.4909 -8.0092 4.5074 44 1 8.6701 -5.2887 2.8025 45 1 7.6634 -6.2586 3.9114 46 1 4.7062 0.5769 0.9879 47 1 5.2644 -1.0889 0.7019 48 1 4.1509 -0.3131 -0.4501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:58 Heat of formation + Delta-G solvation = 11.316892 kcal Electronic energy + Delta-G solvation = -29772.215054 eV Core-core repulsion = 25671.233329 eV Total energy + Delta-G solvation = -4100.981724 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.39254 -39.65191 -37.68338 -37.31733 -34.71352 -34.26948 -34.11418 -32.22441 -30.56165 -29.52519 -28.15800 -27.77158 -27.42006 -26.23217 -24.81712 -23.98887 -22.55694 -20.91285 -20.09846 -19.73094 -19.45675 -17.81087 -17.31522 -17.04376 -16.46246 -15.88372 -15.82477 -15.32585 -15.05269 -14.97162 -14.85921 -14.37112 -14.10410 -13.96759 -13.59757 -13.26274 -13.14213 -13.01655 -12.86585 -12.83002 -12.76244 -12.59662 -12.36485 -12.07622 -11.98389 -11.66889 -11.42624 -11.05128 -10.82026 -10.67874 -10.49795 -10.30437 -10.17876 -9.99687 -9.80406 -9.65837 -9.31956 -8.92222 -8.68142 -8.32484 -8.06519 -7.78014 -6.27929 -4.36590 1.59522 2.21470 2.74642 3.20634 3.27031 3.29153 3.32063 3.44901 3.69573 4.26647 4.32546 4.45772 4.48682 4.50323 4.76630 4.82081 4.86044 4.99823 5.01984 5.07827 5.13093 5.19923 5.27889 5.36132 5.50740 5.54100 5.58665 5.68542 5.77898 5.88459 6.01167 6.08546 6.12714 6.25354 6.50240 6.55369 6.65540 6.70816 6.88021 6.97115 7.14769 7.25097 7.31410 7.61138 7.73363 7.82392 8.03793 8.49211 8.67014 9.07958 9.29884 9.38543 10.79864 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002284 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.271892 B =12257.974627 C =12301.091675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.463 5.463 3 C 0.016 3.984 4 C 0.391 3.609 5 N -0.515 5.515 6 C 0.015 3.985 7 C -0.046 4.046 8 C 0.223 3.777 9 N -0.751 5.751 10 C 0.716 3.284 11 O -0.596 6.596 12 N -0.629 5.629 13 C 0.104 3.896 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.123 3.877 26 N -0.457 5.457 27 C 0.069 3.931 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.174 0.826 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.394 0.606 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 16.395 -7.573 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.186 5.186 3 C -0.131 4.131 4 C 0.039 3.961 5 N -0.239 5.239 6 C -0.134 4.134 7 C -0.159 4.159 8 C 0.097 3.903 9 N -0.409 5.409 10 C 0.418 3.582 11 O -0.475 6.475 12 N -0.366 5.366 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.001 3.999 26 N -0.144 5.144 27 C -0.073 4.073 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.058 0.942 34 H 0.192 0.808 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.228 0.772 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.233 0.767 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.094 0.906 47 H 0.109 0.891 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.714 16.651 -7.664 24.144 hybrid contribution 1.797 0.044 0.527 1.873 sum -13.917 16.694 -7.137 22.876 Atomic orbital electron populations 1.22259 0.82542 1.04069 1.01352 1.58713 1.11263 1.13541 1.35039 1.22676 1.01501 0.86736 1.02207 1.21073 0.80405 1.01518 0.93122 1.70681 1.32287 1.16800 1.04132 1.22036 0.88070 1.02933 1.00372 1.21108 0.97914 1.04607 0.92279 1.19236 0.89779 0.85570 0.95693 1.45265 1.29522 1.27447 1.38703 1.15488 0.80479 0.80029 0.82211 1.90895 1.59263 1.66846 1.30528 1.47978 1.30411 1.23435 1.34778 1.22276 0.96791 0.95053 0.87834 1.22755 0.95840 0.98624 0.98138 1.19506 0.90818 0.81751 0.87165 1.86106 1.61755 1.47158 1.44350 1.21478 0.92687 1.48873 0.94531 0.91588 1.25073 0.99588 0.93793 0.94839 1.69697 1.35851 1.47680 0.99910 0.86407 0.83888 0.78198 0.78436 1.20451 1.20982 1.19721 1.22875 0.83943 0.93135 0.99945 1.45113 1.06230 1.40999 1.22066 1.22144 0.87859 1.00467 0.96824 0.93587 0.90562 0.89981 0.90670 0.89555 0.94158 0.80850 0.91306 0.89241 0.77161 0.91897 0.92844 0.90535 0.90613 0.76744 0.91988 0.91776 0.91816 0.90648 0.89104 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 8.92 60.07 0.54 0.88 16 2 N -0.46 -4.10 5.02 -190.48 -0.96 -5.06 16 3 C 0.02 0.10 9.31 60.07 0.56 0.66 16 4 C 0.39 4.40 7.14 -319.61 -2.28 2.12 16 5 N -0.52 -6.60 10.31 -13.92 -0.14 -6.74 16 6 C 0.02 0.18 11.76 -17.80 -0.21 -0.03 16 7 C -0.05 -0.53 6.33 -81.33 -0.52 -1.04 16 8 C 0.22 2.79 5.75 -5.20 -0.03 2.76 16 9 N -0.75 -11.01 5.51 -66.41 -0.37 -11.38 16 10 C 0.72 14.13 8.49 -86.91 -0.74 13.39 16 11 O -0.60 -14.02 16.67 5.29 0.09 -13.93 16 12 N -0.63 -12.86 3.32 -176.09 -0.59 -13.45 16 13 C 0.10 1.80 6.58 -2.41 -0.02 1.79 16 14 C -0.12 -2.27 6.24 -24.46 -0.15 -2.42 16 15 C 0.25 5.94 0.85 -89.94 -0.08 5.86 16 16 O -0.58 -14.60 13.07 -35.23 -0.46 -15.06 16 17 C -0.54 -13.94 8.13 -34.44 -0.28 -14.22 16 18 H 0.07 1.68 7.78 -52.48 -0.41 1.27 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 20 N -0.89 -23.73 10.96 55.43 0.61 -23.13 16 21 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.12 2.97 5.23 -3.06 -0.02 2.96 16 26 N -0.46 -4.76 3.20 -120.31 -0.38 -5.15 16 27 C 0.07 0.52 9.18 59.84 0.55 1.07 16 28 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 29 H 0.08 0.39 8.12 -51.93 -0.42 -0.04 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.40 5.21 -51.93 -0.27 0.13 16 32 H 0.09 0.35 8.12 -51.93 -0.42 -0.07 16 33 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.17 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 36 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 37 H 0.39 5.25 6.94 -40.82 -0.28 4.97 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.76 7.29 -51.93 -0.38 0.38 16 40 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 41 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.38 9.78 7.45 45.56 0.34 10.12 16 43 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 44 H 0.06 1.70 7.81 -51.93 -0.41 1.29 16 45 H 0.06 1.69 7.92 -51.93 -0.41 1.28 16 46 H 0.08 0.45 7.77 -51.93 -0.40 0.04 16 47 H 0.09 0.75 7.91 -51.92 -0.41 0.34 16 48 H 0.09 0.59 7.47 -51.93 -0.39 0.20 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -32.03 389.16 -10.91 -42.94 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.79 Total: 14.20 kcal Atomic # 6 Polarization: 18.29 SS G_CDS: -2.77 Total: 15.52 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -1.83 Total: -64.89 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.37 Total: -28.99 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.03 -10.91 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.259 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds