Wall clock time and date at job start Tue Mar 31 2020 20:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46905 * 110.99649 * 2 1 4 4 C 1.38494 * 111.00622 * 123.95785 * 2 1 3 5 5 N 1.31204 * 125.78760 * 0.02562 * 4 2 1 6 6 C 1.34383 * 109.30095 * 179.97438 * 5 4 2 7 7 C 1.34377 * 108.32485 * 0.02562 * 6 5 4 8 8 C 1.50698 * 126.53149 * 179.97438 * 7 6 5 9 9 N 1.46497 * 109.47340 * 95.03604 * 8 7 6 10 10 C 1.34779 * 119.99852 * 179.97438 * 9 8 7 11 11 O 1.21585 * 119.99852 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99680 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.65096 * 359.69318 * 12 10 9 14 14 C 1.55128 * 104.72171 * 155.81484 * 13 12 10 15 15 C 1.55160 * 101.48722 * 37.29736 * 14 13 12 16 16 O 1.42898 * 110.71951 * 82.69034 * 15 14 13 17 17 C 1.50695 * 110.87576 * 205.89643 * 15 14 13 18 18 H 1.08005 * 119.99533 * 355.06555 * 17 15 14 19 19 C 1.37875 * 120.00209 * 175.06407 * 17 15 14 20 20 N 1.31513 * 119.99960 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99926 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47253 * 89.99830 * 21 19 17 23 23 H 1.48501 * 109.46931 * 209.99929 * 21 19 17 24 24 H 1.48493 * 109.47160 * 329.99687 * 21 19 17 25 25 C 1.47027 * 125.64633 * 180.02562 * 12 10 9 26 26 N 1.36024 * 125.79188 * 180.02562 * 4 2 1 27 27 C 1.46492 * 126.49414 * 0.05613 * 26 4 2 28 28 H 1.08994 * 109.46744 * 296.03614 * 1 2 3 29 29 H 1.08992 * 109.47504 * 56.04729 * 1 2 3 30 30 H 1.09003 * 109.46426 * 176.04610 * 1 2 3 31 31 H 1.08997 * 109.47171 * 183.95605 * 3 2 1 32 32 H 1.08994 * 109.47163 * 303.95923 * 3 2 1 33 33 H 1.09001 * 109.46489 * 63.95658 * 3 2 1 34 34 H 1.08009 * 125.83589 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.47020 * 215.03769 * 8 7 6 36 36 H 1.09007 * 109.46686 * 335.03361 * 8 7 6 37 37 H 0.96997 * 119.99744 * 359.97438 * 9 8 7 38 38 H 1.09001 * 110.36642 * 274.74480 * 13 12 10 39 39 H 1.09003 * 110.36163 * 37.06898 * 13 12 10 40 40 H 1.08993 * 111.19522 * 279.19630 * 14 13 12 41 41 H 1.08996 * 110.90587 * 155.27497 * 14 13 12 42 42 H 0.96698 * 114.00165 * 185.02340 * 16 15 14 43 43 H 0.97001 * 120.00217 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.88058 * 300.44699 * 25 12 10 45 45 H 1.08997 * 109.87817 * 61.45034 * 25 12 10 46 46 H 1.08998 * 109.47532 * 89.97733 * 27 26 4 47 47 H 1.09008 * 109.46993 * 209.97341 * 27 26 4 48 48 H 1.09004 * 109.47426 * 329.97640 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9655 -0.7222 1.0724 5 7 1.2470 -1.3358 1.9827 6 6 2.0649 -1.9317 2.8668 7 6 3.3342 -1.6846 2.5013 8 6 4.5791 -2.1586 3.2060 9 7 5.0516 -3.3972 2.5825 10 6 6.1589 -4.0071 3.0499 11 8 6.7653 -3.5295 3.9894 12 7 6.5933 -5.1469 2.4766 13 6 5.9531 -5.8358 1.3413 14 6 7.0934 -6.6582 0.6855 15 6 7.8964 -7.1202 1.9302 16 8 7.3028 -8.2826 2.5120 17 6 9.3370 -7.3813 1.5733 18 1 9.6587 -7.3161 0.5443 19 6 10.2443 -7.7034 2.5602 20 7 9.8527 -7.7822 3.8131 21 14 12.0301 -8.0264 2.1177 22 1 12.7930 -6.7536 2.1775 23 1 12.6107 -8.9972 3.0799 24 1 12.1065 -8.5852 0.7440 25 6 7.7802 -5.9128 2.8843 26 7 3.2807 -0.9157 1.3606 27 6 4.4236 -0.4024 0.6015 28 1 -0.3632 0.4511 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3632 -1.0253 -0.0709 31 1 3.0827 1.3434 -0.0709 32 1 1.5897 1.9164 -0.8523 33 1 1.7043 1.8723 0.9234 34 1 1.7550 -2.5097 3.7250 35 1 5.3531 -1.3949 3.1293 36 1 4.3539 -2.3434 4.2564 37 1 4.5675 -3.7783 1.8333 38 1 5.1615 -6.4960 1.6957 39 1 5.5541 -5.1096 0.6331 40 1 7.7058 -6.0338 0.0352 41 1 6.6926 -7.5125 0.1401 42 1 7.7207 -8.5669 3.3364 43 1 10.4909 -8.0092 4.5074 44 1 8.6701 -5.2887 2.8025 45 1 7.6634 -6.2586 3.9114 46 1 4.7062 0.5769 0.9879 47 1 5.2644 -1.0889 0.7019 48 1 4.1509 -0.3131 -0.4501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973584.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:57 Heat of formation + Delta-G solvation = -11.633117 kcal Electronic energy + Delta-G solvation = -29773.210241 eV Core-core repulsion = 25671.233329 eV Total energy + Delta-G solvation = -4101.976911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.22006 -41.24025 -39.19761 -38.19370 -36.07114 -35.92791 -35.00867 -34.22262 -32.01984 -30.79210 -29.52022 -28.69185 -28.09340 -27.48970 -26.31951 -24.87927 -24.10135 -21.77533 -21.45918 -21.08985 -20.82898 -19.28838 -18.91292 -18.15493 -17.53949 -17.18155 -16.93342 -16.72753 -16.46016 -16.22777 -15.86188 -15.54085 -15.36178 -15.10376 -14.77409 -14.66888 -14.62778 -14.23729 -13.91351 -13.77856 -13.66933 -13.62779 -13.49530 -13.25592 -13.23478 -12.92233 -12.84331 -12.53471 -12.52890 -12.34066 -12.28570 -12.09319 -11.42227 -11.16500 -11.11224 -10.71711 -10.65004 -10.59189 -10.30895 -10.28054 -9.42328 -8.88404 -8.25266 -6.41089 0.70778 1.41545 1.43650 1.44811 1.53509 1.72089 2.03735 2.12052 2.38649 2.77515 3.01471 3.09074 3.47577 3.79375 3.81698 3.86348 4.05180 4.08231 4.16689 4.26007 4.27798 4.32886 4.36756 4.48925 4.52774 4.56636 4.59752 4.65690 4.72737 4.73445 4.86071 4.96126 5.05642 5.11640 5.12834 5.22572 5.34259 5.38023 5.43699 5.49560 5.49890 5.75121 5.76556 6.02060 6.14120 6.38852 6.65652 6.98219 7.01770 7.28518 7.35999 7.52080 8.80829 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002284 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.271892 B =12257.974627 C =12301.091675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.467 5.467 3 C 0.015 3.985 4 C 0.391 3.609 5 N -0.544 5.544 6 C 0.006 3.994 7 C -0.049 4.049 8 C 0.229 3.771 9 N -0.727 5.727 10 C 0.714 3.286 11 O -0.639 6.639 12 N -0.634 5.634 13 C 0.109 3.891 14 C -0.110 4.110 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.556 4.556 18 H 0.067 0.933 19 C 0.025 3.975 20 N -0.915 5.915 21 Si 0.963 3.037 22 H -0.279 1.279 23 H -0.283 1.283 24 H -0.265 1.265 25 C 0.143 3.857 26 N -0.457 5.457 27 C 0.066 3.934 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.033 0.967 34 H 0.183 0.817 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.405 0.595 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.375 0.625 43 H 0.270 0.730 44 H 0.031 0.969 45 H 0.028 0.972 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.114 17.688 -9.902 25.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.190 5.190 3 C -0.132 4.132 4 C 0.038 3.962 5 N -0.269 5.269 6 C -0.143 4.143 7 C -0.163 4.163 8 C 0.104 3.896 9 N -0.385 5.385 10 C 0.416 3.584 11 O -0.522 6.522 12 N -0.371 5.371 13 C -0.013 4.013 14 C -0.148 4.148 15 C 0.193 3.807 16 O -0.396 6.396 17 C -0.594 4.594 18 H 0.086 0.914 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.208 1.208 24 H -0.189 1.189 25 C 0.019 3.981 26 N -0.144 5.144 27 C -0.076 4.076 28 H 0.056 0.944 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.052 0.948 34 H 0.200 0.800 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.241 0.759 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.224 0.776 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.111 0.889 47 H 0.103 0.897 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.596 17.968 -10.051 26.444 hybrid contribution 1.989 -0.289 1.218 2.350 sum -14.608 17.679 -8.833 24.575 Atomic orbital electron populations 1.22291 0.81982 1.03584 1.02178 1.58844 1.11828 1.14767 1.33585 1.22795 1.02143 0.85234 1.02979 1.21431 0.80628 1.01058 0.93075 1.70676 1.33147 1.17968 1.05058 1.22297 0.88333 1.02982 1.00692 1.20806 0.96978 1.05442 0.93034 1.19221 0.90254 0.84485 0.95628 1.45078 1.27608 1.27451 1.38346 1.15637 0.81227 0.79762 0.81745 1.90863 1.60867 1.67931 1.32489 1.47898 1.29726 1.23707 1.35768 1.22398 0.95826 0.95749 0.87282 1.22751 0.96049 0.99475 0.96491 1.19723 0.91128 0.81070 0.88822 1.86097 1.61756 1.47704 1.43996 1.21815 0.94034 1.48927 0.94649 0.91447 1.25817 1.03274 0.93697 0.94803 1.69809 1.36836 1.48175 1.00588 0.85479 0.79437 0.77879 0.78388 1.20444 1.20809 1.18932 1.22346 0.84333 0.93181 0.98274 1.45230 1.06737 1.40607 1.21781 1.22349 0.86697 1.01056 0.97469 0.94440 0.87700 0.91466 0.89831 0.87136 0.94777 0.80012 0.91158 0.89450 0.75894 0.91315 0.88571 0.89670 0.89291 0.77578 0.92113 0.95045 0.95333 0.88884 0.89694 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 8.92 127.69 1.14 1.76 16 2 N -0.47 -7.21 5.02 -756.54 -3.80 -11.01 16 3 C 0.01 0.14 9.31 127.69 1.19 1.33 16 4 C 0.39 8.12 7.14 260.37 1.86 9.98 16 5 N -0.54 -13.39 10.31 -197.94 -2.04 -15.43 16 6 C 0.01 0.15 11.76 83.42 0.98 1.13 16 7 C -0.05 -1.05 6.33 40.76 0.26 -0.80 16 8 C 0.23 5.48 5.75 85.63 0.49 5.98 16 9 N -0.73 -20.25 5.51 -482.29 -2.66 -22.91 16 10 C 0.71 27.95 8.49 179.05 1.52 29.47 16 11 O -0.64 -30.61 16.67 -3.98 -0.07 -30.67 16 12 N -0.63 -25.69 3.32 -829.30 -2.76 -28.45 16 13 C 0.11 3.55 6.58 86.93 0.57 4.12 16 14 C -0.11 -4.11 6.24 32.06 0.20 -3.91 16 15 C 0.23 11.21 0.85 -10.35 -0.01 11.20 16 16 O -0.59 -29.66 13.07 -148.98 -1.95 -31.61 16 17 C -0.56 -28.98 8.13 25.60 0.21 -28.78 16 18 H 0.07 3.41 7.78 -2.91 -0.02 3.38 16 19 C 0.03 1.31 5.28 84.65 0.45 1.76 16 20 N -0.91 -49.95 10.96 21.45 0.24 -49.71 16 21 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 22 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 C 0.14 7.09 5.23 86.73 0.45 7.55 16 26 N -0.46 -8.61 3.20 -534.53 -1.71 -10.32 16 27 C 0.07 0.82 9.18 127.77 1.17 1.99 16 28 H 0.04 0.56 8.10 -2.39 -0.02 0.54 16 29 H 0.10 0.77 8.12 -2.39 -0.02 0.75 16 30 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.08 0.63 5.21 -2.39 -0.01 0.62 16 32 H 0.11 0.50 8.12 -2.39 -0.02 0.48 16 33 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.18 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.07 1.70 8.09 -2.39 -0.02 1.69 16 36 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.41 9.73 6.94 -92.71 -0.64 9.09 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.10 2.33 7.29 -2.39 -0.02 2.31 16 40 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 41 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.38 19.81 7.45 -74.06 -0.55 19.26 16 43 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.03 1.73 7.81 -2.39 -0.02 1.71 16 45 H 0.03 1.59 7.92 -2.39 -0.02 1.57 16 46 H 0.09 0.85 7.77 -2.39 -0.02 0.83 16 47 H 0.08 1.20 7.91 -2.38 -0.02 1.18 16 48 H 0.11 1.03 7.47 -2.38 -0.02 1.01 16 Total: -1.00 -70.93 389.16 -2.43 -73.36 By element: Atomic # 1 Polarization: 40.18 SS G_CDS: -0.21 Total: 39.97 kcal Atomic # 6 Polarization: 32.29 SS G_CDS: 10.48 Total: 42.77 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -12.72 Total: -137.83 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -2.01 Total: -62.28 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.93 -2.43 -73.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973584.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.729 kcal (2) G-P(sol) polarization free energy of solvation -70.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds