Wall clock time and date at job start Tue Mar 31 2020 20:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99867 * 2 1 4 4 C 1.38496 * 111.00014 * 123.95615 * 2 1 3 5 5 N 1.31192 * 125.79069 * 300.93451 * 4 2 1 6 6 C 1.34393 * 109.30424 * 180.26926 * 5 4 2 7 7 C 1.34380 * 108.31606 * 359.76707 * 6 5 4 8 8 C 1.50697 * 126.52284 * 179.97438 * 7 6 5 9 9 N 1.46509 * 109.47457 * 95.02392 * 8 7 6 10 10 C 1.34766 * 120.00125 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00327 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99955 * 179.97438 * 10 9 8 13 13 C 1.47422 * 125.64768 * 0.02562 * 12 10 9 14 14 C 1.54904 * 104.83330 * 204.08937 * 13 12 10 15 15 C 1.55154 * 101.58299 * 322.99110 * 14 13 12 16 16 O 1.42900 * 110.71930 * 277.13674 * 15 14 13 17 17 C 1.50706 * 110.71930 * 154.03987 * 15 14 13 18 18 H 1.07997 * 119.99970 * 265.76603 * 17 15 14 19 19 C 1.37873 * 119.99858 * 85.77641 * 17 15 14 20 20 N 1.31509 * 120.00021 * 177.22575 * 19 17 15 21 21 Si 1.86802 * 120.00149 * 357.21852 * 19 17 15 22 22 H 1.48498 * 109.47285 * 84.67710 * 21 19 17 23 23 H 1.48499 * 109.47397 * 204.67886 * 21 19 17 24 24 H 1.48499 * 109.47071 * 324.67462 * 21 19 17 25 25 C 1.47018 * 125.65022 * 179.71269 * 12 10 9 26 26 N 1.36030 * 125.79177 * 120.80524 * 4 2 1 27 27 C 1.46501 * 126.48924 * 359.97438 * 26 4 2 28 28 H 1.08994 * 109.47150 * 296.04254 * 1 2 3 29 29 H 1.09003 * 109.47305 * 56.04581 * 1 2 3 30 30 H 1.09005 * 109.47065 * 176.04583 * 1 2 3 31 31 H 1.09002 * 109.46933 * 185.16053 * 3 2 1 32 32 H 1.09000 * 109.47086 * 305.16737 * 3 2 1 33 33 H 1.09002 * 109.47053 * 65.16670 * 3 2 1 34 34 H 1.07999 * 125.84511 * 179.75910 * 6 5 4 35 35 H 1.09005 * 109.47064 * 215.01988 * 8 7 6 36 36 H 1.08995 * 109.48024 * 335.02180 * 8 7 6 37 37 H 0.97006 * 119.99266 * 359.97438 * 9 8 7 38 38 H 1.09001 * 110.36719 * 322.93271 * 13 12 10 39 39 H 1.08999 * 110.36565 * 85.25082 * 13 12 10 40 40 H 1.09004 * 111.00197 * 81.06551 * 14 13 12 41 41 H 1.08999 * 111.00836 * 204.87512 * 14 13 12 42 42 H 0.96698 * 113.99726 * 180.39283 * 16 15 14 43 43 H 0.97008 * 120.00544 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.88528 * 298.40117 * 25 12 10 45 45 H 1.09000 * 109.87966 * 59.56049 * 25 12 10 46 46 H 1.08992 * 109.47446 * 264.19384 * 27 26 4 47 47 H 1.09002 * 109.47543 * 24.19828 * 27 26 4 48 48 H 1.09007 * 109.46748 * 144.19368 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9653 -0.7222 1.0725 5 7 1.7296 -0.4747 2.3391 6 6 2.3792 -1.3752 3.0962 7 6 3.0381 -2.2157 2.2806 8 6 3.8983 -3.3804 2.6983 9 7 3.0999 -4.6087 2.6800 10 6 3.6643 -5.7845 3.0193 11 8 4.8364 -5.8261 3.3402 12 7 2.9297 -6.9143 3.0030 13 6 1.5050 -7.0076 2.6354 14 6 0.9956 -8.2874 3.3440 15 6 2.2231 -9.2269 3.2106 16 8 2.2347 -9.8652 1.9321 17 6 2.2332 -10.2512 4.3160 18 1 2.7962 -10.0659 5.2188 19 6 1.5238 -11.4249 4.1746 20 7 1.5763 -12.3424 5.1154 21 14 0.4878 -11.7120 2.6469 22 1 1.3442 -12.2578 1.5634 23 1 -0.5945 -12.6801 2.9574 24 1 -0.1098 -10.4263 2.2054 25 6 3.4179 -8.2589 3.3426 26 7 2.7780 -1.8100 0.9912 27 6 3.2849 -2.4290 -0.2360 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0811 1.3439 -0.0924 32 1 1.5730 1.9228 -0.8401 33 1 1.7226 1.8653 0.9327 34 1 2.3729 -1.4162 4.1754 35 1 4.7349 -3.4807 2.0067 36 1 4.2781 -3.2090 3.7054 37 1 2.1649 -4.5755 2.4236 38 1 0.9625 -6.1333 2.9950 39 1 1.3976 -7.1038 1.5550 40 1 0.7670 -8.0895 4.3912 41 1 0.1287 -8.7007 2.8284 42 1 2.9791 -10.4681 1.8003 43 1 1.0769 -13.1681 5.0162 44 1 4.2113 -8.5500 2.6542 45 1 3.7904 -8.2702 4.3669 46 1 2.6416 -3.2635 -0.5147 47 1 3.2919 -1.6917 -1.0388 48 1 4.2988 -2.7923 -0.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591973593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:15 Heat of formation + Delta-G solvation = 15.452536 kcal Electronic energy + Delta-G solvation = -29716.120386 eV Core-core repulsion = 25615.317997 eV Total energy + Delta-G solvation = -4100.802389 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.42937 -39.92888 -37.94489 -37.44406 -34.85314 -34.74039 -34.15266 -32.40190 -30.79328 -29.70067 -28.34692 -28.08839 -27.33319 -26.39893 -24.94571 -24.12010 -22.57773 -21.01618 -20.08826 -20.02816 -19.62523 -18.11335 -17.57998 -17.35290 -16.54161 -16.05547 -15.81928 -15.45621 -15.16080 -15.03284 -14.78966 -14.67639 -14.22677 -14.09200 -13.81572 -13.46504 -13.33752 -13.13003 -12.94862 -12.88677 -12.69547 -12.63691 -12.48152 -12.33880 -12.18918 -12.12127 -11.67018 -11.50916 -11.11062 -10.58081 -10.45620 -10.36786 -10.18142 -9.93954 -9.82577 -9.30503 -9.21646 -9.11442 -8.67703 -8.65250 -8.60131 -8.08963 -6.23074 -4.36030 1.45887 2.15671 2.61576 3.05820 3.39082 3.44699 3.46233 3.47282 3.61415 4.23430 4.26059 4.42101 4.49400 4.52567 4.80950 4.83916 4.93448 4.99438 5.01016 5.05140 5.10959 5.14337 5.20942 5.27729 5.39696 5.45200 5.46578 5.51413 5.59320 5.72787 5.81955 5.83658 6.08696 6.18632 6.23162 6.40093 6.47280 6.50471 6.52882 6.64042 6.73946 7.04715 7.10498 7.26367 7.42559 7.68761 8.08167 8.22609 8.61875 8.78957 8.82493 9.36674 10.86039 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.002405 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.506970 B =11640.967001 C =12202.450374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.476 5.476 3 C 0.035 3.965 4 C 0.374 3.626 5 N -0.507 5.507 6 C 0.010 3.990 7 C -0.038 4.038 8 C 0.221 3.779 9 N -0.748 5.748 10 C 0.720 3.280 11 O -0.596 6.596 12 N -0.627 5.627 13 C 0.100 3.900 14 C -0.121 4.121 15 C 0.218 3.782 16 O -0.566 6.566 17 C -0.553 4.553 18 H 0.082 0.918 19 C 0.074 3.926 20 N -0.886 5.886 21 Si 0.942 3.058 22 H -0.290 1.290 23 H -0.323 1.323 24 H -0.266 1.266 25 C 0.113 3.887 26 N -0.438 5.438 27 C 0.075 3.925 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.174 0.826 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.396 0.604 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.374 0.626 43 H 0.267 0.733 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.757 24.096 -12.195 27.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.200 5.200 3 C -0.113 4.113 4 C 0.022 3.978 5 N -0.229 5.229 6 C -0.141 4.141 7 C -0.153 4.153 8 C 0.096 3.904 9 N -0.406 5.406 10 C 0.422 3.578 11 O -0.475 6.475 12 N -0.364 5.364 13 C -0.023 4.023 14 C -0.159 4.159 15 C 0.178 3.822 16 O -0.374 6.374 17 C -0.590 4.590 18 H 0.100 0.900 19 C -0.131 4.131 20 N -0.521 5.521 21 Si 0.777 3.223 22 H -0.217 1.217 23 H -0.254 1.254 24 H -0.192 1.192 25 C -0.010 4.010 26 N -0.122 5.122 27 C -0.067 4.067 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.192 0.808 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.222 0.778 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.113 0.887 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.676 24.648 -12.247 27.531 hybrid contribution -0.252 -0.850 -0.451 0.995 sum -0.929 23.798 -12.698 26.990 Atomic orbital electron populations 1.22396 0.83731 1.03011 1.01974 1.58715 1.09938 1.14796 1.36561 1.22417 1.00677 0.86183 1.01977 1.20780 0.97021 0.90669 0.89289 1.70724 1.24700 1.26904 1.00558 1.22068 0.98511 0.93843 0.99677 1.21179 1.08177 1.02627 0.83316 1.19286 0.90659 0.78156 1.02292 1.45202 1.14439 1.05757 1.75202 1.15405 0.84334 0.79438 0.78637 1.90904 1.14934 1.85492 1.56198 1.47690 1.11357 1.06878 1.70440 1.22347 0.81281 0.99340 0.99356 1.23114 0.99263 0.92705 1.00813 1.20113 0.89815 0.90012 0.82282 1.86147 1.51483 1.62101 1.37709 1.21197 1.33392 1.01568 1.02849 0.90042 1.25116 0.95516 0.95181 0.97268 1.69948 1.40727 1.07493 1.33977 0.85871 0.78490 0.76821 0.81138 1.21731 1.25428 1.19243 1.22706 0.98204 0.79433 1.00608 1.45374 1.36884 1.23085 1.06858 1.22035 1.00476 0.99395 0.84813 0.93401 0.90271 0.91214 0.91340 0.90228 0.93531 0.80848 0.91068 0.89014 0.77017 0.92310 0.92020 0.89610 0.89853 0.77804 0.92318 0.92441 0.90931 0.90414 0.88727 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 9.49 60.06 0.57 0.83 16 2 N -0.48 -4.03 4.86 -190.47 -0.93 -4.95 16 3 C 0.03 0.24 9.52 60.07 0.57 0.81 16 4 C 0.37 3.97 6.34 -319.61 -2.03 1.95 16 5 N -0.51 -6.14 11.11 -13.92 -0.15 -6.30 16 6 C 0.01 0.11 11.76 -17.79 -0.21 -0.10 16 7 C -0.04 -0.40 6.33 -81.34 -0.52 -0.92 16 8 C 0.22 2.46 5.93 -5.19 -0.03 2.43 16 9 N -0.75 -9.74 5.51 -66.41 -0.37 -10.11 16 10 C 0.72 12.55 8.49 -86.92 -0.74 11.81 16 11 O -0.60 -12.44 16.67 5.28 0.09 -12.35 16 12 N -0.63 -11.23 3.33 -176.24 -0.59 -11.81 16 13 C 0.10 1.59 6.56 -2.53 -0.02 1.57 16 14 C -0.12 -2.32 5.84 -24.59 -0.14 -2.46 16 15 C 0.22 4.69 0.69 -89.93 -0.06 4.62 16 16 O -0.57 -11.80 8.93 -35.23 -0.31 -12.12 16 17 C -0.55 -14.33 8.79 -34.44 -0.30 -14.63 16 18 H 0.08 2.33 7.79 -52.49 -0.41 1.92 16 19 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 20 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 21 Si 0.94 22.31 24.72 -169.99 -4.20 18.11 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.32 -7.92 7.11 56.52 0.40 -7.52 16 24 H -0.27 -6.08 5.11 56.52 0.29 -5.79 16 25 C 0.11 2.30 6.23 -3.06 -0.02 2.28 16 26 N -0.44 -4.30 3.20 -120.31 -0.39 -4.68 16 27 C 0.08 0.54 10.95 59.85 0.66 1.20 16 28 H 0.05 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.17 1.63 8.06 -52.49 -0.42 1.20 16 35 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.40 4.67 6.94 -40.82 -0.28 4.39 16 38 H 0.06 0.78 7.30 -51.93 -0.38 0.40 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 1.66 8.04 -51.93 -0.42 1.25 16 41 H 0.08 1.63 6.13 -51.93 -0.32 1.31 16 42 H 0.37 7.03 8.80 45.56 0.40 7.43 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.06 1.15 8.07 -51.93 -0.42 0.73 16 45 H 0.07 1.59 7.64 -51.93 -0.40 1.19 16 46 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.58 8.00 -51.93 -0.42 0.16 16 48 H 0.08 0.56 7.51 -51.93 -0.39 0.17 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -33.46 387.21 -9.48 -42.94 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.88 Total: 9.15 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -2.36 Total: 11.31 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -1.64 Total: -62.88 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.23 Total: -24.47 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.20 Total: 18.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.46 -9.48 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.397 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds