Wall clock time and date at job start Tue Mar 31 2020 20:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 110.99867 * 2 1 4 4 C 1.38496 * 111.00014 * 123.95615 * 2 1 3 5 5 N 1.31192 * 125.79069 * 300.93451 * 4 2 1 6 6 C 1.34393 * 109.30424 * 180.26926 * 5 4 2 7 7 C 1.34380 * 108.31606 * 359.76707 * 6 5 4 8 8 C 1.50697 * 126.52284 * 179.97438 * 7 6 5 9 9 N 1.46509 * 109.47457 * 95.02392 * 8 7 6 10 10 C 1.34766 * 120.00125 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00327 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99955 * 179.97438 * 10 9 8 13 13 C 1.47422 * 125.64768 * 0.02562 * 12 10 9 14 14 C 1.54904 * 104.83330 * 204.08937 * 13 12 10 15 15 C 1.55154 * 101.58299 * 322.99110 * 14 13 12 16 16 O 1.42900 * 110.71930 * 277.13674 * 15 14 13 17 17 C 1.50706 * 110.71930 * 154.03987 * 15 14 13 18 18 H 1.07997 * 119.99970 * 265.76603 * 17 15 14 19 19 C 1.37873 * 119.99858 * 85.77641 * 17 15 14 20 20 N 1.31509 * 120.00021 * 177.22575 * 19 17 15 21 21 Si 1.86802 * 120.00149 * 357.21852 * 19 17 15 22 22 H 1.48498 * 109.47285 * 84.67710 * 21 19 17 23 23 H 1.48499 * 109.47397 * 204.67886 * 21 19 17 24 24 H 1.48499 * 109.47071 * 324.67462 * 21 19 17 25 25 C 1.47018 * 125.65022 * 179.71269 * 12 10 9 26 26 N 1.36030 * 125.79177 * 120.80524 * 4 2 1 27 27 C 1.46501 * 126.48924 * 359.97438 * 26 4 2 28 28 H 1.08994 * 109.47150 * 296.04254 * 1 2 3 29 29 H 1.09003 * 109.47305 * 56.04581 * 1 2 3 30 30 H 1.09005 * 109.47065 * 176.04583 * 1 2 3 31 31 H 1.09002 * 109.46933 * 185.16053 * 3 2 1 32 32 H 1.09000 * 109.47086 * 305.16737 * 3 2 1 33 33 H 1.09002 * 109.47053 * 65.16670 * 3 2 1 34 34 H 1.07999 * 125.84511 * 179.75910 * 6 5 4 35 35 H 1.09005 * 109.47064 * 215.01988 * 8 7 6 36 36 H 1.08995 * 109.48024 * 335.02180 * 8 7 6 37 37 H 0.97006 * 119.99266 * 359.97438 * 9 8 7 38 38 H 1.09001 * 110.36719 * 322.93271 * 13 12 10 39 39 H 1.08999 * 110.36565 * 85.25082 * 13 12 10 40 40 H 1.09004 * 111.00197 * 81.06551 * 14 13 12 41 41 H 1.08999 * 111.00836 * 204.87512 * 14 13 12 42 42 H 0.96698 * 113.99726 * 180.39283 * 16 15 14 43 43 H 0.97008 * 120.00544 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.88528 * 298.40117 * 25 12 10 45 45 H 1.09000 * 109.87966 * 59.56049 * 25 12 10 46 46 H 1.08992 * 109.47446 * 264.19384 * 27 26 4 47 47 H 1.09002 * 109.47543 * 24.19828 * 27 26 4 48 48 H 1.09007 * 109.46748 * 144.19368 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9653 -0.7222 1.0725 5 7 1.7296 -0.4747 2.3391 6 6 2.3792 -1.3752 3.0962 7 6 3.0381 -2.2157 2.2806 8 6 3.8983 -3.3804 2.6983 9 7 3.0999 -4.6087 2.6800 10 6 3.6643 -5.7845 3.0193 11 8 4.8364 -5.8261 3.3402 12 7 2.9297 -6.9143 3.0030 13 6 1.5050 -7.0076 2.6354 14 6 0.9956 -8.2874 3.3440 15 6 2.2231 -9.2269 3.2106 16 8 2.2347 -9.8652 1.9321 17 6 2.2332 -10.2512 4.3160 18 1 2.7962 -10.0659 5.2188 19 6 1.5238 -11.4249 4.1746 20 7 1.5763 -12.3424 5.1154 21 14 0.4878 -11.7120 2.6469 22 1 1.3442 -12.2578 1.5634 23 1 -0.5945 -12.6801 2.9574 24 1 -0.1098 -10.4263 2.2054 25 6 3.4179 -8.2589 3.3426 26 7 2.7780 -1.8100 0.9912 27 6 3.2849 -2.4290 -0.2360 28 1 -0.3633 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0811 1.3439 -0.0924 32 1 1.5730 1.9228 -0.8401 33 1 1.7226 1.8653 0.9327 34 1 2.3729 -1.4162 4.1754 35 1 4.7349 -3.4807 2.0067 36 1 4.2781 -3.2090 3.7054 37 1 2.1649 -4.5755 2.4236 38 1 0.9625 -6.1333 2.9950 39 1 1.3976 -7.1038 1.5550 40 1 0.7670 -8.0895 4.3912 41 1 0.1287 -8.7007 2.8284 42 1 2.9791 -10.4681 1.8003 43 1 1.0769 -13.1681 5.0162 44 1 4.2113 -8.5500 2.6542 45 1 3.7904 -8.2702 4.3669 46 1 2.6416 -3.2635 -0.5147 47 1 3.2919 -1.6917 -1.0388 48 1 4.2988 -2.7923 -0.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591973593.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:09 Heat of formation + Delta-G solvation = -9.943758 kcal Electronic energy + Delta-G solvation = -29717.221652 eV Core-core repulsion = 25615.317997 eV Total energy + Delta-G solvation = -4101.903655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -43.20256 -41.34014 -39.44896 -38.13861 -36.36778 -35.93179 -34.91913 -34.45117 -32.15306 -30.86717 -29.91506 -28.61908 -27.96861 -27.61774 -26.36092 -24.95473 -24.02666 -21.82744 -21.58216 -21.11138 -20.79564 -19.68317 -19.08621 -18.16424 -17.52336 -17.17181 -17.00714 -16.81649 -16.51504 -16.48344 -15.83217 -15.50940 -15.38501 -15.10613 -15.03122 -14.69163 -14.59148 -14.21832 -14.14111 -14.03508 -13.78735 -13.68915 -13.38289 -13.24215 -13.18627 -13.16736 -12.98882 -12.76664 -12.71296 -12.34589 -12.23044 -11.84083 -11.40737 -11.24281 -11.17860 -10.66085 -10.63693 -10.41757 -10.31881 -9.94562 -9.49498 -9.44282 -8.33658 -6.49576 0.63866 1.44632 1.51730 1.54146 1.62184 1.74631 1.98500 2.08471 2.43760 2.84110 2.98256 3.03075 3.44600 3.49886 3.81059 3.85777 3.90881 4.05370 4.07239 4.27594 4.28460 4.33311 4.39068 4.44754 4.53923 4.56913 4.58420 4.60371 4.69938 4.78597 4.84731 4.89566 4.93127 4.96897 5.08915 5.12577 5.19307 5.33334 5.40936 5.45371 5.51989 5.66434 5.68678 6.01375 6.04365 6.38464 6.58940 6.89938 6.92891 6.95541 7.28272 7.47567 8.79612 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021263 B = 0.002405 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.506970 B =11640.967001 C =12202.450374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.476 5.476 3 C 0.036 3.964 4 C 0.372 3.628 5 N -0.535 5.535 6 C 0.000 4.000 7 C -0.037 4.037 8 C 0.227 3.773 9 N -0.728 5.728 10 C 0.720 3.280 11 O -0.634 6.634 12 N -0.630 5.630 13 C 0.110 3.890 14 C -0.121 4.121 15 C 0.219 3.781 16 O -0.562 6.562 17 C -0.551 4.551 18 H 0.038 0.962 19 C 0.024 3.976 20 N -0.937 5.937 21 Si 1.003 2.997 22 H -0.279 1.279 23 H -0.336 1.336 24 H -0.246 1.246 25 C 0.122 3.878 26 N -0.438 5.438 27 C 0.072 3.928 28 H 0.034 0.966 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.032 0.968 34 H 0.184 0.816 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.405 0.595 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.382 0.618 43 H 0.268 0.732 44 H 0.058 0.942 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 26.127 -15.134 30.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.201 5.201 3 C -0.111 4.111 4 C 0.020 3.980 5 N -0.258 5.258 6 C -0.151 4.151 7 C -0.152 4.152 8 C 0.102 3.898 9 N -0.385 5.385 10 C 0.422 3.578 11 O -0.516 6.516 12 N -0.367 5.367 13 C -0.012 4.012 14 C -0.159 4.159 15 C 0.179 3.821 16 O -0.370 6.370 17 C -0.589 4.589 18 H 0.056 0.944 19 C -0.176 4.176 20 N -0.575 5.575 21 Si 0.835 3.165 22 H -0.206 1.206 23 H -0.268 1.268 24 H -0.171 1.171 25 C -0.002 4.002 26 N -0.122 5.122 27 C -0.069 4.069 28 H 0.052 0.948 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.051 0.949 34 H 0.201 0.799 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.101 0.899 47 H 0.125 0.875 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.790 26.732 -15.221 30.814 hybrid contribution 0.157 -1.406 0.510 1.504 sum -1.633 25.326 -14.711 29.334 Atomic orbital electron populations 1.22433 0.83012 1.03048 1.02422 1.58895 1.10524 1.15347 1.35339 1.22469 1.00798 0.85450 1.02356 1.21107 0.96635 0.90790 0.89471 1.70723 1.25745 1.27768 1.01528 1.22335 0.98525 0.93893 1.00378 1.20959 1.08244 1.02313 0.83723 1.19284 0.90562 0.77416 1.02496 1.45045 1.14891 1.04854 1.73704 1.15502 0.83810 0.80103 0.78429 1.90882 1.16740 1.86121 1.57850 1.47610 1.12264 1.06101 1.70705 1.22393 0.79905 0.98912 1.00029 1.23024 0.98106 0.93776 1.01037 1.19938 0.91752 0.89349 0.81099 1.86107 1.52087 1.62300 1.36545 1.21401 1.31893 1.02754 1.02814 0.94378 1.25923 0.96723 0.94881 1.00039 1.70082 1.42585 1.08395 1.36458 0.84875 0.76740 0.77155 0.77713 1.20565 1.26783 1.17124 1.22341 0.97720 0.80972 0.99165 1.45519 1.36502 1.22852 1.07287 1.22216 1.00781 0.99836 0.84117 0.94754 0.87695 0.91705 0.91425 0.87664 0.94901 0.79934 0.90743 0.89043 0.75859 0.88906 0.90257 0.90430 0.89467 0.76795 0.92340 0.92323 0.93658 0.89851 0.87533 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 9.49 127.69 1.21 1.68 16 2 N -0.48 -7.02 4.86 -756.53 -3.68 -10.70 16 3 C 0.04 0.42 9.52 127.69 1.22 1.63 16 4 C 0.37 7.24 6.34 260.37 1.65 8.89 16 5 N -0.53 -12.33 11.11 -197.94 -2.20 -14.53 16 6 C 0.00 -0.01 11.76 83.42 0.98 0.97 16 7 C -0.04 -0.71 6.33 40.76 0.26 -0.45 16 8 C 0.23 4.61 5.93 85.63 0.51 5.11 16 9 N -0.73 -17.11 5.51 -482.29 -2.66 -19.77 16 10 C 0.72 23.83 8.49 179.06 1.52 25.35 16 11 O -0.63 -26.01 16.67 -4.01 -0.07 -26.07 16 12 N -0.63 -21.35 3.33 -829.76 -2.76 -24.11 16 13 C 0.11 3.10 6.56 86.85 0.57 3.67 16 14 C -0.12 -4.38 5.84 31.98 0.19 -4.19 16 15 C 0.22 9.21 0.69 -10.35 -0.01 9.20 16 16 O -0.56 -21.98 8.93 -148.98 -1.33 -23.31 16 17 C -0.55 -29.19 8.79 25.60 0.23 -28.96 16 18 H 0.04 2.30 7.79 -2.91 -0.02 2.28 16 19 C 0.02 1.32 5.47 84.65 0.46 1.79 16 20 N -0.94 -56.20 13.96 21.45 0.30 -55.90 16 21 Si 1.00 45.23 24.72 68.60 1.70 46.93 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.34 -15.80 7.11 99.48 0.71 -15.10 16 24 H -0.25 -10.22 5.11 99.48 0.51 -9.71 16 25 C 0.12 4.91 6.23 86.73 0.54 5.45 16 26 N -0.44 -7.63 3.20 -534.54 -1.71 -9.34 16 27 C 0.07 0.85 10.95 127.77 1.40 2.25 16 28 H 0.03 0.52 8.05 -2.39 -0.02 0.50 16 29 H 0.10 0.73 8.11 -2.39 -0.02 0.71 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 34 H 0.18 3.22 8.06 -2.91 -0.02 3.20 16 35 H 0.07 1.51 7.52 -2.38 -0.02 1.49 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 8.15 6.94 -92.70 -0.64 7.51 16 38 H 0.09 2.04 7.30 -2.39 -0.02 2.02 16 39 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 2.91 8.04 -2.39 -0.02 2.89 16 41 H 0.09 3.10 6.13 -2.39 -0.01 3.09 16 42 H 0.38 13.59 8.80 -74.06 -0.65 12.94 16 43 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 44 H 0.06 2.32 8.07 -2.38 -0.02 2.30 16 45 H 0.04 2.05 7.64 -2.39 -0.02 2.03 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.11 1.00 8.00 -2.39 -0.02 0.98 16 48 H 0.09 0.97 7.51 -2.38 -0.02 0.95 16 Total: -1.00 -73.57 387.21 -2.19 -75.77 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: -0.51 Total: 28.66 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 10.72 Total: 32.38 kcal Atomic # 7 Polarization: -121.64 SS G_CDS: -12.71 Total: -134.35 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.40 Total: -49.38 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.70 Total: 46.93 kcal Total: -73.57 -2.19 -75.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591973593.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.823 kcal (2) G-P(sol) polarization free energy of solvation -73.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds