Wall clock time and date at job start Tue Mar 31 2020 21:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00009 * 2 1 4 4 C 1.52998 * 109.47102 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47302 * 179.97438 * 4 3 2 6 6 C 1.35846 * 126.05899 * 125.28670 * 5 4 3 7 7 C 1.35729 * 107.56049 * 180.10543 * 6 5 4 8 8 N 1.40841 * 126.07329 * 179.89811 * 7 6 5 9 9 C 1.34781 * 120.00081 * 179.71131 * 8 7 6 10 10 O 1.21602 * 119.99581 * 354.41365 * 9 8 7 11 11 N 1.34777 * 120.00063 * 174.40903 * 9 8 7 12 12 C 1.47077 * 120.88090 * 174.44644 * 11 9 8 13 13 C 1.53240 * 108.52282 * 128.79548 * 12 11 9 14 14 N 1.46900 * 109.33779 * 53.82795 * 13 12 11 15 15 C 1.46902 * 110.99887 * 172.74655 * 14 13 12 16 16 C 1.50704 * 109.46893 * 73.94438 * 15 14 13 17 17 H 1.08004 * 120.00097 * 4.77864 * 16 15 14 18 18 C 1.37870 * 119.99929 * 184.77703 * 16 15 14 19 19 N 1.31517 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47286 * 90.00261 * 20 18 16 22 22 H 1.48505 * 109.47302 * 210.00340 * 20 18 16 23 23 H 1.48493 * 109.47172 * 329.99806 * 20 18 16 24 24 C 1.46907 * 111.27080 * 296.89748 * 14 13 12 25 25 C 1.47079 * 120.87928 * 354.42602 * 11 9 8 26 26 C 1.40237 * 107.84841 * 359.63426 * 7 6 5 27 27 N 1.30833 * 108.34231 * 0.22772 * 26 7 6 28 28 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46663 * 300.00185 * 1 2 3 30 30 H 1.08997 * 109.46984 * 59.99476 * 1 2 3 31 31 H 1.09005 * 109.47287 * 60.00304 * 3 2 1 32 32 H 1.08995 * 109.47457 * 300.00283 * 3 2 1 33 33 H 1.09007 * 109.47013 * 60.00469 * 4 3 2 34 34 H 1.08992 * 109.47850 * 300.00356 * 4 3 2 35 35 H 1.08000 * 126.21736 * 359.97065 * 6 5 4 36 36 H 0.97006 * 120.00040 * 359.71568 * 8 7 6 37 37 H 1.09002 * 109.62679 * 9.08083 * 12 11 9 38 38 H 1.09001 * 109.62579 * 248.50364 * 12 11 9 39 39 H 1.08990 * 109.49151 * 173.78859 * 13 12 11 40 40 H 1.08998 * 109.48908 * 293.87301 * 13 12 11 41 41 H 1.08999 * 109.47189 * 193.94352 * 15 14 13 42 42 H 1.08997 * 109.46986 * 313.94650 * 15 14 13 43 43 H 0.97004 * 120.00143 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.48955 * 303.14570 * 24 14 13 45 45 H 1.08995 * 109.49153 * 183.06615 * 24 14 13 46 46 H 1.08999 * 109.63321 * 350.91240 * 25 11 9 47 47 H 1.09000 * 109.63335 * 111.49622 * 25 11 9 48 48 H 1.08007 * 125.82321 * 180.26426 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0359 2.9960 0.8965 7 6 5.3306 4.2736 0.5457 8 7 6.2259 5.1315 1.2135 9 6 6.4316 6.3815 0.7532 10 8 5.9242 6.7350 -0.2938 11 7 7.1997 7.2395 1.4534 12 6 7.5367 8.5650 0.9124 13 6 7.2012 9.6221 1.9700 14 7 7.8704 9.2775 3.2315 15 6 7.7155 10.3528 4.2203 16 6 6.3046 10.3486 4.7500 17 1 5.6163 9.5736 4.4468 18 6 5.8927 11.3342 5.6217 19 7 6.7307 12.2782 5.9905 20 14 4.1441 11.3287 6.2788 21 1 4.0903 10.5405 7.5361 22 1 3.7128 12.7235 6.5502 23 1 3.2390 10.7178 5.2725 24 6 7.3800 7.9988 3.7630 25 6 7.7228 6.8753 2.7789 26 6 4.5898 4.5855 -0.6035 27 7 3.8741 3.5396 -0.9285 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8575 0.6436 -0.8892 34 1 3.8568 0.6439 0.8907 35 1 5.4444 2.4546 1.7370 36 1 6.6944 4.8228 2.0048 37 1 6.9536 8.7514 0.0105 38 1 8.6006 8.6055 0.6789 39 1 7.5460 10.5986 1.6302 40 1 6.1229 9.6506 2.1263 41 1 8.4128 10.1933 5.0428 42 1 7.9236 11.3131 3.7485 43 1 6.4408 12.9719 6.6035 44 1 6.2992 8.0501 3.8943 45 1 7.8545 7.7983 4.7236 46 1 7.2628 5.9447 3.1111 47 1 8.8046 6.7534 2.7249 48 1 4.6076 5.5281 -1.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600890610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:00 Heat of formation + Delta-G solvation = 35.776165 kcal Electronic energy + Delta-G solvation = -28936.632340 eV Core-core repulsion = 24836.711249 eV Total energy + Delta-G solvation = -4099.921091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.48906 -40.07695 -38.41117 -37.70358 -34.99451 -34.54185 -33.49251 -32.31654 -30.75844 -30.11193 -28.80777 -27.76933 -26.52000 -25.32498 -23.77537 -23.29335 -22.70921 -21.48808 -21.31903 -20.27685 -19.04570 -18.00938 -17.62336 -16.78743 -16.70111 -16.32996 -15.82961 -15.80536 -15.44474 -15.07614 -14.80630 -14.57636 -14.41876 -14.27280 -13.93162 -13.73252 -13.68332 -13.45216 -12.91989 -12.89374 -12.47600 -12.24499 -12.08107 -11.87335 -11.80118 -11.21359 -11.17527 -11.02894 -10.87845 -10.78070 -10.76016 -10.59456 -10.31950 -10.19336 -9.96970 -9.86096 -9.61908 -9.53702 -8.55398 -8.48418 -7.73105 -7.28432 -6.09648 -4.19067 1.61947 2.01964 2.62929 2.70938 3.22754 3.30432 3.33651 3.35324 3.45211 3.89255 4.27772 4.35239 4.47918 4.61545 4.78120 4.82518 4.87285 4.88918 4.96121 5.17035 5.20275 5.20357 5.24710 5.25161 5.35023 5.44379 5.53940 5.58207 5.69657 5.84952 5.94780 6.07201 6.16736 6.37520 6.52655 6.56385 6.64450 6.69248 6.74041 6.87240 6.99599 7.16677 7.45378 7.55661 7.81839 7.89334 7.96382 8.12754 8.22993 8.60412 8.90759 9.48657 10.95578 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.002282 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.374408 B =12266.259868 C =13697.481330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.049 3.951 4 C 0.148 3.852 5 N -0.377 5.377 6 C 0.008 3.992 7 C 0.034 3.966 8 N -0.662 5.662 9 C 0.712 3.288 10 O -0.585 6.585 11 N -0.618 5.618 12 C 0.134 3.866 13 C 0.048 3.952 14 N -0.539 5.539 15 C 0.187 3.813 16 C -0.553 4.553 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.050 3.950 25 C 0.112 3.888 26 C 0.058 3.942 27 N -0.287 5.287 28 H 0.089 0.911 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.406 0.594 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.035 0.965 43 H 0.263 0.737 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -22.776 -9.400 24.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.026 3.974 5 N -0.164 5.164 6 C -0.138 4.138 7 C -0.071 4.071 8 N -0.312 5.312 9 C 0.414 3.586 10 O -0.464 6.464 11 N -0.355 5.355 12 C 0.011 3.989 13 C -0.082 4.082 14 N -0.264 5.264 15 C 0.062 3.938 16 C -0.592 4.592 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.079 4.079 25 C -0.012 4.012 26 C -0.130 4.130 27 N -0.109 5.109 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.122 0.878 35 H 0.193 0.807 36 H 0.243 0.757 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.469 -23.116 -10.924 25.955 hybrid contribution -1.229 0.638 1.950 2.392 sum -5.698 -22.479 -8.974 24.866 Atomic orbital electron populations 1.22777 0.80016 1.03019 1.00441 1.87764 1.20535 1.27127 1.95625 1.22705 0.92873 0.85150 1.02114 1.21256 0.92227 0.78930 1.04988 1.48063 1.34642 1.11823 1.21905 1.21759 0.98763 0.94656 0.98637 1.17501 1.00508 0.90682 0.98437 1.42048 1.45682 1.11810 1.31663 1.15664 0.79616 0.79998 0.83340 1.90765 1.54434 1.77016 1.24138 1.47339 1.52861 1.16364 1.18931 1.21756 1.00401 0.79603 0.97160 1.22299 0.98080 0.97171 0.90634 1.62496 1.54886 1.03863 1.05119 1.19776 0.95473 0.88828 0.89764 1.21764 0.98239 1.11341 1.27838 0.92397 1.24961 0.97290 0.95261 0.96218 1.69939 1.35003 1.13925 1.33876 0.86650 0.85043 0.77370 0.79302 1.20606 1.21078 1.20008 1.22240 0.99670 0.89677 0.96349 1.21930 0.99170 0.97784 0.82280 1.24577 0.94113 0.98706 0.95619 1.77359 1.23794 0.96360 1.13375 0.89232 0.93807 0.93697 0.92613 0.91526 0.88987 0.87849 0.80657 0.75722 0.89175 0.91358 0.90273 0.94062 0.95113 0.94733 0.92749 0.93548 0.90184 0.91331 0.90847 0.77524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.23 10.70 -35.23 -0.38 -3.61 16 3 C 0.05 0.40 6.13 37.16 0.23 0.63 16 4 C 0.15 1.11 6.89 -4.04 -0.03 1.08 16 5 N -0.38 -3.96 3.70 -61.02 -0.23 -4.19 16 6 C 0.01 0.08 11.52 -16.67 -0.19 -0.11 16 7 C 0.03 0.43 6.90 -83.86 -0.58 -0.15 16 8 N -0.66 -8.11 5.33 -14.39 -0.08 -8.19 16 9 C 0.71 10.97 8.27 -86.91 -0.72 10.25 16 10 O -0.59 -10.56 12.98 5.28 0.07 -10.49 16 11 N -0.62 -9.21 3.01 -178.19 -0.54 -9.74 16 12 C 0.13 2.07 6.61 -3.60 -0.02 2.05 16 13 C 0.05 0.88 5.36 -3.70 -0.02 0.86 16 14 N -0.54 -10.65 4.83 -235.76 -1.14 -11.79 16 15 C 0.19 4.56 5.20 -4.97 -0.03 4.53 16 16 C -0.55 -14.63 7.92 -34.44 -0.27 -14.90 16 17 H 0.06 1.53 5.87 -52.48 -0.31 1.23 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.49 13.29 55.43 0.74 -24.75 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.05 0.87 4.98 -3.70 -0.02 0.85 16 25 C 0.11 1.46 6.48 -3.60 -0.02 1.44 16 26 C 0.06 0.83 10.84 -17.23 -0.19 0.64 16 27 N -0.29 -3.88 12.41 30.70 0.38 -3.50 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.18 1.02 8.06 -52.49 -0.42 0.59 16 36 H 0.41 3.76 6.50 -40.82 -0.27 3.49 16 37 H 0.09 1.42 7.04 -51.93 -0.37 1.05 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.43 7.95 -51.93 -0.41 1.02 16 40 H 0.04 0.87 7.73 -51.93 -0.40 0.46 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.03 0.91 7.89 -51.93 -0.41 0.50 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.05 0.92 6.22 -51.93 -0.32 0.60 16 45 H 0.08 1.37 8.11 -51.93 -0.42 0.94 16 46 H 0.07 0.69 5.87 -51.93 -0.30 0.38 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.21 3.24 5.93 -52.48 -0.31 2.93 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -32.73 387.50 -8.50 -41.23 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.30 Total: 2.91 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.85 Total: 10.18 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: -0.86 Total: -62.15 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.31 Total: -14.10 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.73 -8.50 -41.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600890610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.004 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds