Wall clock time and date at job start Tue Mar 31 2020 21:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00009 * 2 1 4 4 C 1.52998 * 109.47102 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47302 * 179.97438 * 4 3 2 6 6 C 1.35846 * 126.05899 * 125.28670 * 5 4 3 7 7 C 1.35729 * 107.56049 * 180.10543 * 6 5 4 8 8 N 1.40841 * 126.07329 * 179.89811 * 7 6 5 9 9 C 1.34781 * 120.00081 * 179.71131 * 8 7 6 10 10 O 1.21602 * 119.99581 * 354.41365 * 9 8 7 11 11 N 1.34777 * 120.00063 * 174.40903 * 9 8 7 12 12 C 1.47077 * 120.88090 * 174.44644 * 11 9 8 13 13 C 1.53240 * 108.52282 * 128.79548 * 12 11 9 14 14 N 1.46900 * 109.33779 * 53.82795 * 13 12 11 15 15 C 1.46902 * 110.99887 * 172.74655 * 14 13 12 16 16 C 1.50704 * 109.46893 * 73.94438 * 15 14 13 17 17 H 1.08004 * 120.00097 * 4.77864 * 16 15 14 18 18 C 1.37870 * 119.99929 * 184.77703 * 16 15 14 19 19 N 1.31517 * 120.00144 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00058 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47286 * 90.00261 * 20 18 16 22 22 H 1.48505 * 109.47302 * 210.00340 * 20 18 16 23 23 H 1.48493 * 109.47172 * 329.99806 * 20 18 16 24 24 C 1.46907 * 111.27080 * 296.89748 * 14 13 12 25 25 C 1.47079 * 120.87928 * 354.42602 * 11 9 8 26 26 C 1.40237 * 107.84841 * 359.63426 * 7 6 5 27 27 N 1.30833 * 108.34231 * 0.22772 * 26 7 6 28 28 H 1.08998 * 109.47175 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46663 * 300.00185 * 1 2 3 30 30 H 1.08997 * 109.46984 * 59.99476 * 1 2 3 31 31 H 1.09005 * 109.47287 * 60.00304 * 3 2 1 32 32 H 1.08995 * 109.47457 * 300.00283 * 3 2 1 33 33 H 1.09007 * 109.47013 * 60.00469 * 4 3 2 34 34 H 1.08992 * 109.47850 * 300.00356 * 4 3 2 35 35 H 1.08000 * 126.21736 * 359.97065 * 6 5 4 36 36 H 0.97006 * 120.00040 * 359.71568 * 8 7 6 37 37 H 1.09002 * 109.62679 * 9.08083 * 12 11 9 38 38 H 1.09001 * 109.62579 * 248.50364 * 12 11 9 39 39 H 1.08990 * 109.49151 * 173.78859 * 13 12 11 40 40 H 1.08998 * 109.48908 * 293.87301 * 13 12 11 41 41 H 1.08999 * 109.47189 * 193.94352 * 15 14 13 42 42 H 1.08997 * 109.46986 * 313.94650 * 15 14 13 43 43 H 0.97004 * 120.00143 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.48955 * 303.14570 * 24 14 13 45 45 H 1.08995 * 109.49153 * 183.06615 * 24 14 13 46 46 H 1.08999 * 109.63321 * 350.91240 * 25 11 9 47 47 H 1.09000 * 109.63335 * 111.49622 * 25 11 9 48 48 H 1.08007 * 125.82321 * 180.26426 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0359 2.9960 0.8965 7 6 5.3306 4.2736 0.5457 8 7 6.2259 5.1315 1.2135 9 6 6.4316 6.3815 0.7532 10 8 5.9242 6.7350 -0.2938 11 7 7.1997 7.2395 1.4534 12 6 7.5367 8.5650 0.9124 13 6 7.2012 9.6221 1.9700 14 7 7.8704 9.2775 3.2315 15 6 7.7155 10.3528 4.2203 16 6 6.3046 10.3486 4.7500 17 1 5.6163 9.5736 4.4468 18 6 5.8927 11.3342 5.6217 19 7 6.7307 12.2782 5.9905 20 14 4.1441 11.3287 6.2788 21 1 4.0903 10.5405 7.5361 22 1 3.7128 12.7235 6.5502 23 1 3.2390 10.7178 5.2725 24 6 7.3800 7.9988 3.7630 25 6 7.7228 6.8753 2.7789 26 6 4.5898 4.5855 -0.6035 27 7 3.8741 3.5396 -0.9285 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8575 0.6436 -0.8892 34 1 3.8568 0.6439 0.8907 35 1 5.4444 2.4546 1.7370 36 1 6.6944 4.8228 2.0048 37 1 6.9536 8.7514 0.0105 38 1 8.6006 8.6055 0.6789 39 1 7.5460 10.5986 1.6302 40 1 6.1229 9.6506 2.1263 41 1 8.4128 10.1933 5.0428 42 1 7.9236 11.3131 3.7485 43 1 6.4408 12.9719 6.6035 44 1 6.2992 8.0501 3.8943 45 1 7.8545 7.7983 4.7236 46 1 7.2628 5.9447 3.1111 47 1 8.8046 6.7534 2.7249 48 1 4.6076 5.5281 -1.1306 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600890610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:58 Heat of formation + Delta-G solvation = 11.352188 kcal Electronic energy + Delta-G solvation = -28937.691443 eV Core-core repulsion = 24836.711249 eV Total energy + Delta-G solvation = -4100.980194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.41457 -41.22266 -39.19849 -38.92825 -36.04662 -36.00550 -34.50342 -34.08353 -32.05103 -30.96461 -30.06320 -29.00299 -27.25819 -26.88993 -24.63369 -24.49477 -24.29139 -22.77317 -22.17209 -21.51582 -20.27126 -19.15506 -18.58849 -18.20137 -17.54210 -17.33335 -16.92230 -16.71536 -16.63397 -16.32432 -16.00588 -15.87750 -15.57164 -15.38921 -15.30745 -15.03058 -14.74273 -14.51142 -14.25045 -13.79518 -13.70660 -13.55934 -13.09561 -12.99338 -12.90741 -12.68945 -12.54154 -12.51572 -12.34606 -12.16493 -11.96676 -11.79459 -11.75072 -11.73621 -11.57451 -11.09312 -10.77869 -10.61590 -10.41227 -9.78909 -9.03705 -8.64017 -8.17064 -6.35817 0.78426 1.22822 1.33841 1.35946 1.45097 1.57724 1.67720 2.34410 2.35385 2.77304 2.88308 3.08337 3.33089 3.68411 3.89017 3.91016 4.02660 4.08835 4.15162 4.20984 4.24866 4.38354 4.39335 4.45378 4.50866 4.53256 4.60073 4.65313 4.67152 4.78649 4.81469 4.82252 4.91710 5.07857 5.16409 5.19841 5.24721 5.35846 5.49801 5.73406 5.76791 5.89064 5.97668 6.03029 6.09622 6.22206 6.48785 6.62614 6.84689 6.91373 7.35792 7.48938 8.85100 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.002282 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.374408 B =12266.259868 C =13697.481330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.054 3.946 4 C 0.143 3.857 5 N -0.371 5.371 6 C 0.042 3.958 7 C 0.002 3.998 8 N -0.645 5.645 9 C 0.706 3.294 10 O -0.618 6.618 11 N -0.622 5.622 12 C 0.145 3.855 13 C 0.053 3.947 14 N -0.533 5.533 15 C 0.199 3.801 16 C -0.557 4.557 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.276 1.276 24 C 0.049 3.951 25 C 0.122 3.878 26 C 0.034 3.966 27 N -0.315 5.315 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.226 0.774 36 H 0.422 0.578 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.009 0.991 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.019 0.981 45 H 0.083 0.917 46 H 0.106 0.894 47 H 0.096 0.904 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -26.103 -8.462 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.024 4.024 4 C 0.023 3.977 5 N -0.157 5.157 6 C -0.106 4.106 7 C -0.103 4.103 8 N -0.296 5.296 9 C 0.408 3.592 10 O -0.499 6.499 11 N -0.359 5.359 12 C 0.022 3.978 13 C -0.077 4.077 14 N -0.257 5.257 15 C 0.072 3.928 16 C -0.596 4.596 17 H 0.073 0.927 18 C -0.186 4.186 19 N -0.562 5.562 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.201 1.201 24 C -0.080 4.080 25 C -0.001 4.001 26 C -0.152 4.152 27 N -0.137 5.137 28 H 0.124 0.876 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.242 0.758 36 H 0.262 0.738 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.027 0.973 41 H 0.030 0.970 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.037 0.963 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.114 0.886 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.543 -26.499 -9.980 28.678 hybrid contribution -1.266 1.558 1.629 2.586 sum -5.809 -24.941 -8.351 26.936 Atomic orbital electron populations 1.22962 0.78922 1.04281 1.00753 1.87742 1.21794 1.26953 1.95645 1.22592 0.93478 0.85116 1.01178 1.21563 0.91626 0.77534 1.07012 1.48398 1.34184 1.12098 1.21055 1.22466 0.96428 0.93385 0.98321 1.17668 1.01754 0.92048 0.98851 1.41753 1.45433 1.10600 1.31857 1.15821 0.79338 0.80918 0.83120 1.90762 1.55543 1.77863 1.25703 1.47352 1.52971 1.15997 1.19542 1.21562 1.01411 0.79253 0.95599 1.22269 0.95863 0.98572 0.90949 1.62435 1.55142 1.03645 1.04453 1.19451 0.94069 0.89287 0.89979 1.22011 0.99066 1.11027 1.27455 0.92706 1.25756 1.01115 0.95062 0.96694 1.70049 1.36834 1.14643 1.34694 0.85642 0.80293 0.77445 0.78804 1.19482 1.20769 1.20090 1.22321 0.97847 0.89771 0.98096 1.21985 1.00825 0.97163 0.80083 1.24331 0.95572 0.98434 0.96884 1.77309 1.24479 0.97093 1.14860 0.87555 0.93298 0.93626 0.92819 0.93290 0.88411 0.84362 0.75760 0.73805 0.89625 0.89357 0.90561 0.97253 0.96952 0.97413 0.92616 0.96304 0.89848 0.87567 0.88606 0.79962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -5.87 10.70 -148.98 -1.59 -7.46 16 3 C 0.05 0.79 6.13 71.98 0.44 1.23 16 4 C 0.14 1.70 6.89 86.38 0.59 2.30 16 5 N -0.37 -6.85 3.70 -346.96 -1.29 -8.14 16 6 C 0.04 0.65 11.52 83.49 0.96 1.62 16 7 C 0.00 0.04 6.90 37.60 0.26 0.30 16 8 N -0.65 -14.25 5.33 -317.70 -1.69 -15.94 16 9 C 0.71 21.01 8.27 179.05 1.48 22.50 16 10 O -0.62 -22.66 12.98 -4.04 -0.05 -22.72 16 11 N -0.62 -17.59 3.01 -835.92 -2.52 -20.11 16 12 C 0.15 4.43 6.61 86.35 0.57 5.00 16 13 C 0.05 1.99 5.36 86.38 0.46 2.46 16 14 N -0.53 -21.17 4.83 -899.81 -4.35 -25.52 16 15 C 0.20 9.99 5.20 85.56 0.45 10.43 16 16 C -0.56 -30.04 7.92 25.60 0.20 -29.84 16 17 H 0.05 2.96 5.87 -2.91 -0.02 2.94 16 18 C 0.01 0.75 5.46 84.65 0.46 1.21 16 19 N -0.92 -53.84 13.29 21.45 0.28 -53.56 16 20 Si 0.95 43.67 29.54 68.60 2.03 45.69 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 C 0.05 1.65 4.98 86.38 0.43 2.08 16 25 C 0.12 2.84 6.48 86.35 0.56 3.40 16 26 C 0.03 1.00 10.84 85.33 0.92 1.92 16 27 N -0.31 -8.39 12.41 -56.78 -0.70 -9.10 16 28 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.14 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.23 1.15 8.06 -2.91 -0.02 1.12 16 36 H 0.42 6.10 6.50 -92.70 -0.60 5.50 16 37 H 0.09 2.72 7.04 -2.39 -0.02 2.71 16 38 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 2.86 7.95 -2.39 -0.02 2.84 16 40 H 0.01 0.40 7.73 -2.39 -0.02 0.38 16 41 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.01 0.42 7.89 -2.39 -0.02 0.40 16 43 H 0.26 14.62 8.31 -92.70 -0.77 13.85 16 44 H 0.02 0.74 6.22 -2.39 -0.01 0.73 16 45 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 46 H 0.11 1.69 5.87 -2.39 -0.01 1.67 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.18 6.13 5.93 -2.91 -0.02 6.11 16 Total: -1.00 -74.46 387.50 -0.46 -74.92 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.37 Total: 15.81 kcal Atomic # 6 Polarization: 17.07 SS G_CDS: 9.05 Total: 26.12 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -10.26 Total: -132.36 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -1.65 Total: -30.18 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -74.46 -0.46 -74.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600890610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.271 kcal (2) G-P(sol) polarization free energy of solvation -74.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds