Wall clock time and date at job start Tue Mar 31 2020 21:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00155 * 2 1 4 4 C 1.38843 * 119.99885 * 179.97438 * 2 1 3 5 5 N 1.30634 * 126.38789 * 359.97438 * 4 2 1 6 6 O 1.21288 * 110.12705 * 179.97438 * 5 4 2 7 7 C 1.33649 * 109.97883 * 0.02562 * 6 5 4 8 8 C 1.50707 * 126.45942 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47221 * 270.05299 * 8 7 6 10 10 C 1.50697 * 109.47225 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99972 * 179.97438 * 10 9 8 13 13 C 1.47081 * 120.88289 * 359.72977 * 12 10 9 14 14 C 1.53696 * 108.27788 * 128.75139 * 13 12 10 15 15 N 1.46897 * 109.25516 * 54.08286 * 14 13 12 16 16 C 1.46900 * 110.99474 * 172.60684 * 15 14 13 17 17 C 1.50700 * 109.47279 * 294.29625 * 16 15 14 18 18 H 1.07999 * 119.99589 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47321 * 90.00080 * 21 19 17 23 23 H 1.48499 * 109.47168 * 210.00058 * 21 19 17 24 24 H 1.48496 * 109.47232 * 329.99965 * 21 19 17 25 25 C 1.46896 * 111.27065 * 296.75225 * 15 14 13 26 26 C 1.47086 * 120.87838 * 180.02562 * 12 10 9 27 27 N 1.31036 * 107.07919 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47268 * 240.00287 * 1 2 3 29 29 H 1.09001 * 109.47329 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47319 * 120.00323 * 1 2 3 31 31 H 1.08999 * 109.46808 * 269.99946 * 3 2 1 32 32 H 1.09008 * 109.46946 * 29.99924 * 3 2 1 33 33 H 1.08993 * 109.47168 * 150.00001 * 3 2 1 34 34 H 1.09001 * 109.46759 * 30.05288 * 8 7 6 35 35 H 1.09000 * 109.47065 * 150.04766 * 8 7 6 36 36 H 1.08995 * 109.47187 * 300.00412 * 9 8 7 37 37 H 1.09003 * 109.46965 * 60.00226 * 9 8 7 38 38 H 1.09000 * 109.62602 * 248.52125 * 13 12 10 39 39 H 1.09003 * 109.62550 * 9.09295 * 13 12 10 40 40 H 1.08998 * 109.64445 * 294.07580 * 14 13 12 41 41 H 1.09007 * 109.41399 * 173.94684 * 14 13 12 42 42 H 1.09006 * 109.47215 * 54.30171 * 16 15 14 43 43 H 1.09001 * 109.46843 * 174.29950 * 16 15 14 44 44 H 0.97004 * 120.00400 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.49423 * 303.15106 * 25 15 14 46 46 H 1.08994 * 109.49746 * 183.06945 * 25 15 14 47 47 H 1.08995 * 109.63029 * 350.89627 * 26 12 10 48 48 H 1.08999 * 109.62306 * 111.48408 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1592 -1.2024 0.0005 5 7 1.6359 -2.3994 0.0015 6 8 2.5122 -3.2380 0.0013 7 6 3.7105 -2.6462 0.0006 8 6 5.0502 -3.3365 0.0006 9 6 5.5034 -3.5704 1.4430 10 6 6.8427 -4.2612 1.4430 11 8 7.3819 -4.5387 0.3927 12 7 7.4418 -4.5698 2.6102 13 6 6.8086 -4.2361 3.8951 14 6 6.7836 -5.5038 4.7638 15 7 8.1441 -6.0484 4.8653 16 6 8.1966 -7.1576 5.8271 17 6 7.9069 -6.6366 7.2111 18 1 7.7037 -5.5866 7.3612 19 6 7.9013 -7.5004 8.2857 20 7 8.1493 -8.7789 8.1030 21 14 7.5415 -6.8547 10.0013 22 1 6.0804 -6.9203 10.2586 23 1 8.2582 -7.6844 11.0029 24 1 7.9999 -5.4462 10.1063 25 6 8.6501 -6.4667 3.5513 26 6 8.7491 -5.2435 2.6328 27 7 3.5010 -1.3527 -0.0001 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.9656 -4.2939 -0.5135 35 1 5.7809 -2.7117 -0.5131 36 1 5.5879 -2.6131 1.9571 37 1 4.7727 -4.1953 1.9566 38 1 7.3839 -3.4570 4.3954 39 1 5.7900 -3.8889 3.7221 40 1 6.1274 -6.2463 4.3097 41 1 6.4166 -5.2537 5.7593 42 1 7.4526 -7.9074 5.5579 43 1 9.1891 -7.6077 5.8087 44 1 8.1457 -9.3867 8.8590 45 1 7.9680 -7.1958 3.1140 46 1 9.6368 -6.9150 3.6672 47 1 9.0140 -5.5628 1.6249 48 1 9.5070 -4.5592 3.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:44 Heat of formation + Delta-G solvation = 59.737737 kcal Electronic energy + Delta-G solvation = -28831.087441 eV Core-core repulsion = 24732.205403 eV Total energy + Delta-G solvation = -4098.882039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.52348 -40.12844 -37.84165 -37.68184 -35.57210 -34.46906 -33.95735 -32.48018 -31.45622 -30.59985 -28.70709 -28.30797 -26.30054 -26.17498 -25.01501 -23.37072 -23.08392 -22.01952 -21.25545 -20.49054 -18.75962 -18.18429 -18.01008 -17.14086 -16.42704 -16.36907 -15.96043 -15.78998 -15.37805 -15.31616 -14.80918 -14.51626 -14.36638 -14.21074 -13.82501 -13.62262 -13.39380 -13.13159 -13.08102 -12.77181 -12.72711 -12.45777 -12.33026 -12.26218 -12.07204 -11.92568 -11.50908 -11.32902 -11.11427 -11.10804 -11.00856 -10.79402 -10.67696 -10.57481 -10.52805 -9.94001 -9.75409 -9.31302 -8.56658 -8.47934 -8.41379 -7.37398 -6.09264 -4.11535 1.01871 2.14807 2.24220 2.59859 2.62358 3.10157 3.27091 3.34113 3.37429 3.64696 4.29864 4.35780 4.38848 4.53909 4.64492 4.74549 4.76024 4.87875 4.93135 5.05488 5.15506 5.21477 5.25370 5.27291 5.29329 5.35091 5.36958 5.41114 5.48452 5.60563 5.63448 5.72117 5.74470 5.82714 5.98513 6.24408 6.40059 6.41748 6.44724 6.60772 6.73014 7.18017 7.23942 7.45930 7.70562 7.97534 8.07877 8.14119 8.17879 8.43418 8.95501 9.53163 11.01446 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002143 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.583224 B =13065.301462 C =14387.898507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.592 5.592 3 C 0.108 3.892 4 C 0.423 3.577 5 N -0.436 5.436 6 O 0.063 5.937 7 C 0.207 3.793 8 C -0.011 4.011 9 C -0.138 4.138 10 C 0.519 3.481 11 O -0.550 6.550 12 N -0.605 5.605 13 C 0.107 3.893 14 C 0.049 3.951 15 N -0.536 5.536 16 C 0.193 3.807 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.041 3.959 26 C 0.118 3.882 27 N -0.507 5.507 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.026 0.974 41 H 0.097 0.903 42 H -0.009 1.009 43 H 0.032 0.968 44 H 0.262 0.738 45 H 0.027 0.973 46 H 0.081 0.919 47 H 0.089 0.911 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.014 17.049 -16.606 26.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.320 5.320 3 C -0.035 4.035 4 C 0.063 3.937 5 N -0.164 5.164 6 O 0.018 5.982 7 C -0.014 4.014 8 C -0.050 4.050 9 C -0.179 4.179 10 C 0.307 3.693 11 O -0.429 6.429 12 N -0.338 5.338 13 C -0.016 4.016 14 C -0.080 4.080 15 N -0.261 5.261 16 C 0.068 3.932 17 C -0.549 4.549 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.089 4.089 26 C -0.004 4.004 27 N -0.247 5.247 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.009 0.991 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.100 0.900 47 H 0.107 0.893 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.166 17.426 -16.876 26.705 hybrid contribution -0.716 -0.476 0.885 1.234 sum -11.882 16.951 -15.991 26.157 Atomic orbital electron populations 1.21624 0.77009 1.02778 1.02030 1.45070 1.05099 1.00287 1.81541 1.21662 0.97348 0.82769 1.01698 1.21996 0.85682 0.88115 0.97890 1.74838 1.11743 0.97917 1.31908 1.85277 1.12378 1.33166 1.67379 1.28461 0.91761 0.87085 0.94065 1.19957 0.85035 1.01859 0.98173 1.21644 0.96153 1.03117 0.97021 1.20244 0.86553 0.79029 0.83505 1.90690 1.66278 1.55097 1.30842 1.48223 1.21308 1.58328 1.05953 1.22158 0.97537 0.98811 0.83080 1.22419 0.91093 0.94278 1.00212 1.62081 1.20856 1.36530 1.06631 1.19734 0.96843 0.86794 0.89784 1.21123 1.47672 0.94850 0.91230 0.91815 1.24998 0.95425 0.94818 0.99359 1.69953 1.49438 1.02851 1.31360 0.86498 0.78218 0.78905 0.83795 1.20737 1.21241 1.19750 1.22419 1.00859 0.94948 0.90663 1.21790 0.83710 0.94408 1.00527 1.71826 1.12302 1.15507 1.25111 0.92371 0.89940 0.92485 0.93053 0.90910 0.90507 0.87016 0.86391 0.87886 0.87908 0.90355 0.90169 0.95553 0.88438 0.99069 0.94974 0.92841 0.95471 0.90017 0.89267 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.71 10.51 59.85 0.63 1.34 16 2 N -0.59 -5.45 3.39 -193.16 -0.65 -6.10 16 3 C 0.11 0.70 10.56 59.85 0.63 1.33 16 4 C 0.42 5.06 8.34 -321.18 -2.68 2.38 16 5 N -0.44 -5.62 11.84 28.63 0.34 -5.28 16 6 O 0.06 0.75 11.29 18.09 0.20 0.95 16 7 C 0.21 2.17 7.75 -12.99 -0.10 2.07 16 8 C -0.01 -0.09 5.13 -27.88 -0.14 -0.24 16 9 C -0.14 -1.26 4.05 -27.89 -0.11 -1.38 16 10 C 0.52 6.59 7.71 -10.99 -0.08 6.51 16 11 O -0.55 -8.45 15.43 5.56 0.09 -8.36 16 12 N -0.61 -8.23 3.00 -172.15 -0.52 -8.74 16 13 C 0.11 1.38 6.53 -3.36 -0.02 1.36 16 14 C 0.05 0.84 5.47 -3.46 -0.02 0.83 16 15 N -0.54 -10.67 4.62 -235.44 -1.09 -11.76 16 16 C 0.19 4.79 4.72 -4.98 -0.02 4.77 16 17 C -0.51 -13.61 8.41 -34.44 -0.29 -13.90 16 18 H 0.06 1.66 7.13 -52.49 -0.37 1.29 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 21 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 25 C 0.04 0.69 5.62 -3.68 -0.02 0.67 16 26 C 0.12 1.71 6.60 -3.58 -0.02 1.69 16 27 N -0.51 -5.93 10.96 -12.68 -0.14 -6.07 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.30 7.79 -51.93 -0.40 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.29 7.92 -51.92 -0.41 -0.12 16 33 H 0.08 0.57 7.69 -51.93 -0.40 0.17 16 34 H 0.11 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.12 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.10 0.84 7.99 -51.93 -0.41 0.42 16 37 H 0.10 0.85 7.67 -51.93 -0.40 0.45 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.10 1.79 6.67 -51.93 -0.35 1.45 16 42 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 43 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.36 7.99 -51.93 -0.41 0.95 16 47 H 0.09 1.27 7.06 -51.93 -0.37 0.91 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -33.22 393.08 -10.10 -43.32 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -7.61 Total: -3.40 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -2.36 Total: 8.86 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -1.32 Total: -63.16 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.29 Total: -7.41 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.22 -10.10 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.053 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds