Wall clock time and date at job start Tue Mar 31 2020 21:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00155 * 2 1 4 4 C 1.38843 * 119.99885 * 179.97438 * 2 1 3 5 5 N 1.30634 * 126.38789 * 359.97438 * 4 2 1 6 6 O 1.21288 * 110.12705 * 179.97438 * 5 4 2 7 7 C 1.33649 * 109.97883 * 0.02562 * 6 5 4 8 8 C 1.50707 * 126.45942 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47221 * 270.05299 * 8 7 6 10 10 C 1.50697 * 109.47225 * 179.97438 * 9 8 7 11 11 O 1.21277 * 120.00024 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99972 * 179.97438 * 10 9 8 13 13 C 1.47081 * 120.88289 * 359.72977 * 12 10 9 14 14 C 1.53696 * 108.27788 * 128.75139 * 13 12 10 15 15 N 1.46897 * 109.25516 * 54.08286 * 14 13 12 16 16 C 1.46900 * 110.99474 * 172.60684 * 15 14 13 17 17 C 1.50700 * 109.47279 * 294.29625 * 16 15 14 18 18 H 1.07999 * 119.99589 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00121 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99971 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47321 * 90.00080 * 21 19 17 23 23 H 1.48499 * 109.47168 * 210.00058 * 21 19 17 24 24 H 1.48496 * 109.47232 * 329.99965 * 21 19 17 25 25 C 1.46896 * 111.27065 * 296.75225 * 15 14 13 26 26 C 1.47086 * 120.87838 * 180.02562 * 12 10 9 27 27 N 1.31036 * 107.07919 * 359.97438 * 7 6 5 28 28 H 1.09000 * 109.47268 * 240.00287 * 1 2 3 29 29 H 1.09001 * 109.47329 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47319 * 120.00323 * 1 2 3 31 31 H 1.08999 * 109.46808 * 269.99946 * 3 2 1 32 32 H 1.09008 * 109.46946 * 29.99924 * 3 2 1 33 33 H 1.08993 * 109.47168 * 150.00001 * 3 2 1 34 34 H 1.09001 * 109.46759 * 30.05288 * 8 7 6 35 35 H 1.09000 * 109.47065 * 150.04766 * 8 7 6 36 36 H 1.08995 * 109.47187 * 300.00412 * 9 8 7 37 37 H 1.09003 * 109.46965 * 60.00226 * 9 8 7 38 38 H 1.09000 * 109.62602 * 248.52125 * 13 12 10 39 39 H 1.09003 * 109.62550 * 9.09295 * 13 12 10 40 40 H 1.08998 * 109.64445 * 294.07580 * 14 13 12 41 41 H 1.09007 * 109.41399 * 173.94684 * 14 13 12 42 42 H 1.09006 * 109.47215 * 54.30171 * 16 15 14 43 43 H 1.09001 * 109.46843 * 174.29950 * 16 15 14 44 44 H 0.97004 * 120.00400 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.49423 * 303.15106 * 25 15 14 46 46 H 1.08994 * 109.49746 * 183.06945 * 25 15 14 47 47 H 1.08995 * 109.63029 * 350.89627 * 26 12 10 48 48 H 1.08999 * 109.62306 * 111.48408 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1592 -1.2024 0.0005 5 7 1.6359 -2.3994 0.0015 6 8 2.5122 -3.2380 0.0013 7 6 3.7105 -2.6462 0.0006 8 6 5.0502 -3.3365 0.0006 9 6 5.5034 -3.5704 1.4430 10 6 6.8427 -4.2612 1.4430 11 8 7.3819 -4.5387 0.3927 12 7 7.4418 -4.5698 2.6102 13 6 6.8086 -4.2361 3.8951 14 6 6.7836 -5.5038 4.7638 15 7 8.1441 -6.0484 4.8653 16 6 8.1966 -7.1576 5.8271 17 6 7.9069 -6.6366 7.2111 18 1 7.7037 -5.5866 7.3612 19 6 7.9013 -7.5004 8.2857 20 7 8.1493 -8.7789 8.1030 21 14 7.5415 -6.8547 10.0013 22 1 6.0804 -6.9203 10.2586 23 1 8.2582 -7.6844 11.0029 24 1 7.9999 -5.4462 10.1063 25 6 8.6501 -6.4667 3.5513 26 6 8.7491 -5.2435 2.6328 27 7 3.5010 -1.3527 -0.0001 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3634 -0.5139 -0.8899 31 1 2.3792 1.5833 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1383 0.5138 34 1 4.9656 -4.2939 -0.5135 35 1 5.7809 -2.7117 -0.5131 36 1 5.5879 -2.6131 1.9571 37 1 4.7727 -4.1953 1.9566 38 1 7.3839 -3.4570 4.3954 39 1 5.7900 -3.8889 3.7221 40 1 6.1274 -6.2463 4.3097 41 1 6.4166 -5.2537 5.7593 42 1 7.4526 -7.9074 5.5579 43 1 9.1891 -7.6077 5.8087 44 1 8.1457 -9.3867 8.8590 45 1 7.9680 -7.1958 3.1140 46 1 9.6368 -6.9150 3.6672 47 1 9.0140 -5.5628 1.6249 48 1 9.5070 -4.5592 3.0143 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:43 Heat of formation + Delta-G solvation = 37.615251 kcal Electronic energy + Delta-G solvation = -28832.046744 eV Core-core repulsion = 24732.205403 eV Total energy + Delta-G solvation = -4099.841342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.36272 -41.23311 -39.03079 -38.52242 -36.38916 -35.94476 -34.76723 -34.35928 -32.50159 -31.67724 -30.01524 -29.16587 -27.63934 -26.85284 -26.26397 -24.61159 -24.05765 -23.58935 -22.18752 -21.68051 -19.85097 -19.07607 -18.80789 -18.47596 -18.14657 -17.12876 -16.96392 -16.81369 -16.65678 -16.06022 -15.97287 -15.91106 -15.54937 -15.31132 -15.23157 -14.90640 -14.39249 -14.17525 -13.99064 -13.62922 -13.58415 -13.53135 -13.35634 -13.12080 -13.00388 -12.90681 -12.83738 -12.73135 -12.57948 -12.37060 -12.29862 -12.18126 -12.09553 -11.94417 -11.74552 -11.35012 -11.26119 -10.83533 -10.60889 -9.73771 -9.10977 -9.03107 -8.19089 -6.29234 0.19973 1.40432 1.43969 1.45218 1.50345 1.56500 1.59876 1.78406 2.11710 2.41871 2.87397 3.13653 3.25826 3.47803 3.64602 3.76548 4.01779 4.02768 4.08057 4.15197 4.27034 4.32168 4.37993 4.42187 4.42642 4.48006 4.55391 4.63706 4.68358 4.70484 4.78171 4.79496 4.86711 4.89347 4.95390 4.98073 4.99672 5.05302 5.22053 5.25869 5.46656 5.65308 5.87192 6.02430 6.04160 6.25164 6.45003 6.58800 6.87004 7.11152 7.36496 7.40764 8.92090 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013827 B = 0.002143 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.583224 B =13065.301462 C =14387.898507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.595 5.595 3 C 0.105 3.895 4 C 0.413 3.587 5 N -0.461 5.461 6 O 0.052 5.948 7 C 0.217 3.783 8 C -0.004 4.004 9 C -0.130 4.130 10 C 0.521 3.479 11 O -0.577 6.577 12 N -0.611 5.611 13 C 0.120 3.880 14 C 0.046 3.954 15 N -0.539 5.539 16 C 0.207 3.793 17 C -0.519 4.519 18 H 0.070 0.930 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.273 1.273 23 H -0.287 1.287 24 H -0.261 1.261 25 C 0.042 3.958 26 C 0.128 3.872 27 N -0.520 5.520 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.017 0.983 41 H 0.084 0.916 42 H -0.041 1.041 43 H 0.004 0.996 44 H 0.263 0.737 45 H 0.016 0.984 46 H 0.079 0.921 47 H 0.093 0.907 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.054 19.846 -16.553 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.323 5.323 3 C -0.037 4.037 4 C 0.052 3.948 5 N -0.193 5.193 6 O 0.010 5.990 7 C -0.004 4.004 8 C -0.043 4.043 9 C -0.171 4.171 10 C 0.311 3.689 11 O -0.457 6.457 12 N -0.344 5.344 13 C -0.003 4.003 14 C -0.082 4.082 15 N -0.264 5.264 16 C 0.081 3.919 17 C -0.558 4.558 18 H 0.088 0.912 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.199 1.199 23 H -0.213 1.213 24 H -0.186 1.186 25 C -0.087 4.087 26 C 0.005 3.995 27 N -0.261 5.261 28 H 0.069 0.931 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.035 0.965 41 H 0.103 0.897 42 H -0.023 1.023 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.097 0.903 47 H 0.111 0.889 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.212 20.259 -16.843 29.039 hybrid contribution -0.386 -1.343 0.785 1.603 sum -12.598 18.916 -16.059 27.828 Atomic orbital electron populations 1.21782 0.75762 1.04797 1.01339 1.45541 1.06104 1.00124 1.80522 1.21828 0.97263 0.82272 1.02339 1.22411 0.86004 0.88886 0.97460 1.74813 1.12389 0.98441 1.33648 1.85240 1.12713 1.33222 1.67854 1.28721 0.91839 0.86893 0.92916 1.19970 0.84093 1.02093 0.98133 1.21627 0.94077 1.03769 0.97598 1.20754 0.87239 0.78327 0.82567 1.90686 1.67191 1.56140 1.31690 1.48293 1.21026 1.58460 1.06612 1.22125 0.99908 0.96296 0.81956 1.22486 0.89169 0.95974 1.00611 1.62008 1.22857 1.34295 1.07271 1.19381 0.94081 0.87489 0.90947 1.21454 1.47094 0.95140 0.92067 0.91190 1.25939 0.95192 0.94956 1.03787 1.70093 1.50695 1.04262 1.32619 0.85370 0.78255 0.78590 0.78332 1.19863 1.21255 1.18551 1.22455 1.00233 0.96285 0.89716 1.21612 0.84795 0.93321 0.99785 1.71836 1.12367 1.16018 1.25879 0.93083 0.86576 0.93147 0.92493 0.88015 0.91645 0.86382 0.86062 0.86068 0.86470 0.89483 0.86416 0.96459 0.89723 1.02319 0.97776 0.92795 0.96586 0.90287 0.88869 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.21 10.51 127.77 1.34 2.55 16 2 N -0.59 -9.97 3.39 -767.83 -2.60 -12.57 16 3 C 0.10 1.12 10.56 127.77 1.35 2.47 16 4 C 0.41 9.41 8.34 260.92 2.18 11.59 16 5 N -0.46 -11.60 11.84 -66.70 -0.79 -12.39 16 6 O 0.05 1.19 11.29 74.80 0.84 2.04 16 7 C 0.22 4.22 7.75 88.36 0.69 4.90 16 8 C 0.00 -0.06 5.13 29.85 0.15 0.10 16 9 C -0.13 -1.98 4.05 29.84 0.12 -1.86 16 10 C 0.52 12.00 7.71 87.66 0.68 12.68 16 11 O -0.58 -16.68 15.43 -3.02 -0.05 -16.73 16 12 N -0.61 -15.31 3.00 -816.95 -2.45 -17.76 16 13 C 0.12 2.78 6.53 86.50 0.57 3.35 16 14 C 0.05 1.57 5.47 86.54 0.47 2.04 16 15 N -0.54 -21.72 4.62 -898.79 -4.15 -25.87 16 16 C 0.21 10.67 4.72 85.56 0.40 11.08 16 17 C -0.52 -28.05 8.41 25.60 0.22 -27.84 16 18 H 0.07 3.62 7.13 -2.91 -0.02 3.60 16 19 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 20 N -0.94 -55.45 13.29 21.45 0.28 -55.17 16 21 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 25 C 0.04 1.45 5.62 86.40 0.49 1.94 16 26 C 0.13 3.55 6.60 86.36 0.57 4.12 16 27 N -0.52 -11.42 10.96 -311.44 -3.41 -14.83 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.12 0.50 7.79 -2.39 -0.02 0.48 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.49 7.92 -2.38 -0.02 0.47 16 33 H 0.06 0.86 7.69 -2.39 -0.02 0.84 16 34 H 0.12 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.12 1.83 8.10 -2.39 -0.02 1.81 16 36 H 0.12 1.49 7.99 -2.39 -0.02 1.47 16 37 H 0.12 1.53 7.67 -2.39 -0.02 1.52 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.12 1.89 6.02 -2.39 -0.01 1.87 16 40 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.08 3.07 6.67 -2.38 -0.02 3.05 16 42 H -0.04 -2.32 8.12 -2.38 -0.02 -2.34 16 43 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 44 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.08 2.72 7.99 -2.39 -0.02 2.70 16 47 H 0.09 2.56 7.06 -2.39 -0.02 2.54 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -73.45 393.08 0.34 -73.11 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.96 Total: 7.81 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: 9.68 Total: 27.54 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -13.12 Total: -138.59 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.80 Total: -14.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.45 0.34 -73.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.723 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds