Wall clock time and date at job start Tue Mar 31 2020 21:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.53002 * 109.46885 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46708 * 179.97438 * 4 3 2 6 6 C 1.34969 * 125.97264 * 125.02554 * 5 4 3 7 7 C 1.35243 * 107.85956 * 179.97438 * 6 5 4 8 8 C 1.40404 * 107.86505 * 359.97438 * 7 6 5 9 9 N 1.40193 * 125.97107 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00129 * 0.02562 * 9 8 7 11 11 O 1.21586 * 120.00230 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00253 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00414 * 179.97438 * 12 10 9 14 14 C 1.53038 * 109.46320 * 275.03393 * 13 12 10 15 15 C 1.53191 * 109.31245 * 178.59988 * 14 13 12 16 16 N 1.46925 * 108.76807 * 54.65397 * 15 14 13 17 17 C 1.36938 * 120.63294 * 126.36325 * 16 15 14 18 18 H 1.08004 * 119.99736 * 331.85724 * 17 16 15 19 19 C 1.38812 * 120.00149 * 151.85616 * 17 16 15 20 20 N 1.31620 * 119.99991 * 343.07658 * 19 17 16 21 21 Si 1.86801 * 119.99704 * 163.06940 * 19 17 16 22 22 H 1.48502 * 109.47065 * 60.00600 * 21 19 17 23 23 H 1.48502 * 109.46602 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47345 * 300.00265 * 21 19 17 25 25 C 1.46926 * 118.73831 * 306.38559 * 16 15 14 26 26 C 1.53048 * 109.46262 * 154.97346 * 13 12 10 27 27 N 1.31206 * 108.05855 * 359.97438 * 8 7 6 28 28 H 1.08996 * 109.47498 * 300.00035 * 1 2 3 29 29 H 1.08997 * 109.47314 * 60.00430 * 1 2 3 30 30 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08986 * 109.47187 * 59.99740 * 3 2 1 32 32 H 1.09000 * 109.46673 * 299.99381 * 3 2 1 33 33 H 1.09003 * 109.47294 * 59.99721 * 4 3 2 34 34 H 1.08995 * 109.47107 * 300.00045 * 4 3 2 35 35 H 1.08004 * 126.06971 * 359.96306 * 6 5 4 36 36 H 1.07997 * 126.06982 * 179.97438 * 7 6 5 37 37 H 0.97006 * 120.00297 * 179.97438 * 9 8 7 38 38 H 0.97006 * 120.00173 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.45794 * 35.00852 * 13 12 10 40 40 H 1.08999 * 109.49647 * 298.56183 * 14 13 12 41 41 H 1.09000 * 109.50088 * 58.65944 * 14 13 12 42 42 H 1.08999 * 109.59674 * 294.86388 * 15 14 13 43 43 H 1.09003 * 109.70207 * 174.50373 * 15 14 13 44 44 H 0.96998 * 119.99889 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58481 * 293.81947 * 25 16 15 46 46 H 1.08999 * 109.70777 * 173.46390 * 25 16 15 47 47 H 1.08995 * 109.49636 * 301.34267 * 26 13 12 48 48 H 1.09000 * 109.49268 * 61.40799 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0268 2.9926 0.8927 7 6 5.3293 4.2648 0.5476 8 6 4.5909 4.5863 -0.6025 9 7 4.6165 5.8127 -1.2813 10 6 5.4031 6.8127 -0.8369 11 8 6.0909 6.6512 0.1526 12 7 5.4281 7.9915 -1.4898 13 6 6.2827 9.0787 -1.0063 14 6 5.5443 9.8628 0.0809 15 6 6.4539 10.9768 0.6084 16 7 6.9044 11.7957 -0.5252 17 6 6.7291 13.1538 -0.5180 18 1 5.9096 13.5896 0.0343 19 6 7.6045 13.9704 -1.2207 20 7 8.7713 13.5026 -1.6106 21 14 7.1263 15.7330 -1.6131 22 1 6.8823 16.4728 -0.3488 23 1 8.2258 16.3881 -2.3662 24 1 5.8907 15.7391 -2.4366 25 6 7.5462 11.1298 -1.6668 26 6 6.6246 10.0139 -2.1686 27 7 3.8727 3.5385 -0.9308 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 5.4300 2.4490 1.7343 36 1 6.0169 4.9175 1.0648 37 1 4.0685 5.9412 -2.0714 38 1 4.8796 8.1203 -2.2794 39 1 7.2013 8.6622 -0.5932 40 1 4.6382 10.3005 -0.3380 41 1 5.2803 9.1913 0.8980 42 1 7.3174 10.5378 1.1081 43 1 5.9018 11.5995 1.3125 44 1 9.3829 14.0731 -2.1020 45 1 8.4989 10.7033 -1.3526 46 1 7.7149 11.8515 -2.4660 47 1 7.1296 9.4499 -2.9528 48 1 5.7081 10.4497 -2.5665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609341145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:18 Heat of formation + Delta-G solvation = 39.728776 kcal Electronic energy + Delta-G solvation = -28539.352705 eV Core-core repulsion = 24439.603012 eV Total energy + Delta-G solvation = -4099.749692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.50749 -39.97949 -38.44128 -37.55417 -35.19666 -34.45024 -33.28017 -32.00310 -30.33645 -30.07968 -29.40798 -28.70111 -26.56467 -25.10023 -23.66672 -22.59685 -22.20585 -21.63173 -20.85442 -20.31432 -19.35866 -18.03709 -17.74261 -17.05294 -16.69261 -16.42218 -16.22824 -15.72335 -15.45489 -15.05314 -14.72166 -14.57243 -14.38810 -13.95056 -13.70914 -13.54116 -13.37206 -13.07955 -13.00278 -12.75462 -12.47619 -12.35509 -12.09397 -11.85339 -11.46280 -11.11288 -10.98679 -10.88253 -10.79094 -10.71322 -10.49570 -10.27816 -10.23546 -10.04307 -9.98238 -9.75915 -9.55351 -9.00067 -8.80998 -8.46591 -8.25180 -6.68220 -5.79413 -3.21562 1.65343 1.83037 2.61884 2.66790 3.38102 3.39335 3.44365 3.44483 3.45477 4.14671 4.23565 4.44228 4.49792 4.66271 4.75319 4.82722 4.84363 4.98659 5.16169 5.20852 5.30950 5.35432 5.40590 5.48883 5.55204 5.59293 5.70887 5.87848 6.07411 6.10828 6.28448 6.32425 6.45665 6.50220 6.56038 6.59567 6.69125 6.80287 6.82626 6.88987 6.94430 7.02162 7.31647 7.52823 7.62709 7.79401 8.02077 8.44833 8.56741 9.20999 9.84183 10.41158 11.29519 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.001712 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.456172 B =16349.136882 C =16560.703702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.146 3.854 5 N -0.374 5.374 6 C 0.063 3.937 7 C -0.260 4.260 8 C 0.327 3.673 9 N -0.652 5.652 10 C 0.711 3.289 11 O -0.566 6.566 12 N -0.730 5.730 13 C 0.169 3.831 14 C -0.140 4.140 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.147 4.147 27 N -0.333 5.333 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.089 0.911 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.409 0.591 38 H 0.394 0.606 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.255 0.745 45 H 0.022 0.978 46 H 0.092 0.908 47 H 0.055 0.945 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 -25.325 1.060 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.028 4.028 4 C 0.024 3.976 5 N -0.160 5.160 6 C -0.082 4.082 7 C -0.290 4.290 8 C 0.070 3.930 9 N -0.304 5.304 10 C 0.410 3.590 11 O -0.441 6.441 12 N -0.384 5.384 13 C 0.065 3.935 14 C -0.181 4.181 15 C 0.021 3.979 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.187 4.187 27 N -0.163 5.163 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.194 0.806 36 H 0.194 0.806 37 H 0.244 0.756 38 H 0.227 0.773 39 H 0.103 0.897 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.103 -26.051 1.091 29.182 hybrid contribution -0.496 1.522 -0.515 1.682 sum -13.599 -24.529 0.575 28.053 Atomic orbital electron populations 1.22772 0.80049 1.03030 1.00391 1.87772 1.20511 1.27170 1.95614 1.22704 0.92945 0.85106 1.02007 1.21298 0.92257 0.79035 1.05035 1.47879 1.35326 1.11079 1.21692 1.22633 0.94068 0.95498 0.95978 1.21958 1.09521 0.96769 1.00784 1.18862 0.95461 0.85886 0.92800 1.41768 1.47175 1.09845 1.31587 1.15774 0.80086 0.79940 0.83197 1.90854 1.45364 1.81229 1.26635 1.45558 1.48821 1.12124 1.31853 1.21010 0.92624 0.84476 0.95351 1.22409 0.99696 0.98137 0.97836 1.20878 0.95055 0.91449 0.90564 1.44084 1.69844 1.03018 1.14557 1.19153 1.07419 0.81683 1.30038 0.91694 1.25048 0.94648 0.97802 1.02092 1.70013 1.06721 1.36239 1.41769 0.86366 0.77424 0.84687 0.78255 1.20881 1.21652 1.21092 1.20741 0.91147 0.91659 0.91643 1.22565 1.01876 0.98046 0.96196 1.77277 1.26927 0.96533 1.15605 0.93833 0.93726 0.89234 0.92661 0.91622 0.89058 0.87662 0.80556 0.80615 0.75572 0.77265 0.89723 0.92366 0.92560 0.96080 0.92551 0.93549 0.96012 0.89000 0.92642 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.01 10.70 -35.23 -0.38 -3.39 16 3 C 0.05 0.37 6.12 37.16 0.23 0.60 16 4 C 0.15 1.02 6.88 -4.04 -0.03 0.99 16 5 N -0.37 -3.79 3.68 -61.38 -0.23 -4.01 16 6 C 0.06 0.62 11.44 -17.24 -0.20 0.42 16 7 C -0.26 -3.43 9.61 -39.83 -0.38 -3.81 16 8 C 0.33 4.41 8.11 -154.37 -1.25 3.16 16 9 N -0.65 -8.03 5.45 -15.51 -0.08 -8.11 16 10 C 0.71 10.48 8.50 -86.92 -0.74 9.74 16 11 O -0.57 -10.18 13.13 5.29 0.07 -10.11 16 12 N -0.73 -9.89 5.08 -58.63 -0.30 -10.19 16 13 C 0.17 2.84 2.42 -67.89 -0.16 2.68 16 14 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 15 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 16 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 20 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 21 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 26 C -0.15 -2.60 5.55 -26.61 -0.15 -2.75 16 27 N -0.33 -4.20 12.43 31.44 0.39 -3.80 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.41 8.14 -51.94 -0.42 -0.01 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.48 8.07 -51.93 -0.42 0.06 16 35 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.18 2.62 5.91 -52.49 -0.31 2.31 16 37 H 0.41 3.81 8.84 -40.82 -0.36 3.45 16 38 H 0.39 4.17 8.62 -40.82 -0.35 3.82 16 39 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -33.26 392.13 -9.14 -42.40 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.61 Total: 5.46 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -1.99 Total: 9.75 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.11 Total: -66.37 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.31 Total: -13.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.26 -9.14 -42.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.125 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds