Wall clock time and date at job start Tue Mar 31 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99841 * 2 1 4 4 C 1.53002 * 109.46885 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.46708 * 179.97438 * 4 3 2 6 6 C 1.34969 * 125.97264 * 125.02554 * 5 4 3 7 7 C 1.35243 * 107.85956 * 179.97438 * 6 5 4 8 8 C 1.40404 * 107.86505 * 359.97438 * 7 6 5 9 9 N 1.40193 * 125.97107 * 179.97438 * 8 7 6 10 10 C 1.34773 * 120.00129 * 0.02562 * 9 8 7 11 11 O 1.21586 * 120.00230 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00253 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00414 * 179.97438 * 12 10 9 14 14 C 1.53038 * 109.46320 * 275.03393 * 13 12 10 15 15 C 1.53191 * 109.31245 * 178.59988 * 14 13 12 16 16 N 1.46925 * 108.76807 * 54.65397 * 15 14 13 17 17 C 1.36938 * 120.63294 * 126.36325 * 16 15 14 18 18 H 1.08004 * 119.99736 * 331.85724 * 17 16 15 19 19 C 1.38812 * 120.00149 * 151.85616 * 17 16 15 20 20 N 1.31620 * 119.99991 * 343.07658 * 19 17 16 21 21 Si 1.86801 * 119.99704 * 163.06940 * 19 17 16 22 22 H 1.48502 * 109.47065 * 60.00600 * 21 19 17 23 23 H 1.48502 * 109.46602 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47345 * 300.00265 * 21 19 17 25 25 C 1.46926 * 118.73831 * 306.38559 * 16 15 14 26 26 C 1.53048 * 109.46262 * 154.97346 * 13 12 10 27 27 N 1.31206 * 108.05855 * 359.97438 * 8 7 6 28 28 H 1.08996 * 109.47498 * 300.00035 * 1 2 3 29 29 H 1.08997 * 109.47314 * 60.00430 * 1 2 3 30 30 H 1.09004 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08986 * 109.47187 * 59.99740 * 3 2 1 32 32 H 1.09000 * 109.46673 * 299.99381 * 3 2 1 33 33 H 1.09003 * 109.47294 * 59.99721 * 4 3 2 34 34 H 1.08995 * 109.47107 * 300.00045 * 4 3 2 35 35 H 1.08004 * 126.06971 * 359.96306 * 6 5 4 36 36 H 1.07997 * 126.06982 * 179.97438 * 7 6 5 37 37 H 0.97006 * 120.00297 * 179.97438 * 9 8 7 38 38 H 0.97006 * 120.00173 * 0.02562 * 12 10 9 39 39 H 1.09003 * 109.45794 * 35.00852 * 13 12 10 40 40 H 1.08999 * 109.49647 * 298.56183 * 14 13 12 41 41 H 1.09000 * 109.50088 * 58.65944 * 14 13 12 42 42 H 1.08999 * 109.59674 * 294.86388 * 15 14 13 43 43 H 1.09003 * 109.70207 * 174.50373 * 15 14 13 44 44 H 0.96998 * 119.99889 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.58481 * 293.81947 * 25 16 15 46 46 H 1.08999 * 109.70777 * 173.46390 * 25 16 15 47 47 H 1.08995 * 109.49636 * 301.34267 * 26 13 12 48 48 H 1.09000 * 109.49268 * 61.40799 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5231 -0.0013 6 6 5.0268 2.9926 0.8927 7 6 5.3293 4.2648 0.5476 8 6 4.5909 4.5863 -0.6025 9 7 4.6165 5.8127 -1.2813 10 6 5.4031 6.8127 -0.8369 11 8 6.0909 6.6512 0.1526 12 7 5.4281 7.9915 -1.4898 13 6 6.2827 9.0787 -1.0063 14 6 5.5443 9.8628 0.0809 15 6 6.4539 10.9768 0.6084 16 7 6.9044 11.7957 -0.5252 17 6 6.7291 13.1538 -0.5180 18 1 5.9096 13.5896 0.0343 19 6 7.6045 13.9704 -1.2207 20 7 8.7713 13.5026 -1.6106 21 14 7.1263 15.7330 -1.6131 22 1 6.8823 16.4728 -0.3488 23 1 8.2258 16.3881 -2.3662 24 1 5.8907 15.7391 -2.4366 25 6 7.5462 11.1298 -1.6668 26 6 6.6246 10.0139 -2.1686 27 7 3.8727 3.5385 -0.9308 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 0.8898 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 5.4300 2.4490 1.7343 36 1 6.0169 4.9175 1.0648 37 1 4.0685 5.9412 -2.0714 38 1 4.8796 8.1203 -2.2794 39 1 7.2013 8.6622 -0.5932 40 1 4.6382 10.3005 -0.3380 41 1 5.2803 9.1913 0.8980 42 1 7.3174 10.5378 1.1081 43 1 5.9018 11.5995 1.3125 44 1 9.3829 14.0731 -2.1020 45 1 8.4989 10.7033 -1.3526 46 1 7.7149 11.8515 -2.4660 47 1 7.1296 9.4499 -2.9528 48 1 5.7081 10.4497 -2.5665 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:17 Heat of formation + Delta-G solvation = 16.785268 kcal Electronic energy + Delta-G solvation = -28540.347610 eV Core-core repulsion = 24439.603012 eV Total energy + Delta-G solvation = -4100.744598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41058 -41.13393 -39.17771 -38.91965 -36.33865 -35.88023 -34.27949 -33.58805 -31.77019 -31.28007 -30.92164 -29.48921 -27.18249 -26.80441 -24.62719 -23.91262 -23.71228 -22.81244 -21.85403 -21.42927 -20.87552 -19.29171 -18.65329 -18.43087 -17.69405 -17.17372 -16.97923 -16.85147 -16.59081 -16.36862 -15.97113 -15.75966 -15.35920 -15.32873 -15.23949 -14.76749 -14.57654 -14.36884 -14.09688 -14.04565 -13.88684 -13.20432 -13.11796 -12.97665 -12.65165 -12.55786 -12.52150 -12.34979 -12.21725 -12.02138 -11.87251 -11.79353 -11.73727 -11.53754 -11.31714 -11.12485 -10.76150 -10.52778 -10.12340 -9.85116 -9.18860 -8.68057 -7.85642 -5.30979 0.80469 0.95737 1.50490 1.52015 1.59153 1.61967 1.76392 2.34644 2.53989 2.79001 3.14296 3.31155 3.66783 3.69571 3.90202 3.91028 3.98003 4.08130 4.19658 4.26327 4.36711 4.46558 4.48853 4.49352 4.61209 4.68377 4.68521 4.73272 4.81239 4.82953 4.86129 4.88363 5.02993 5.08085 5.18749 5.19451 5.33132 5.49741 5.57481 5.66455 5.68733 5.76450 5.87058 6.00223 6.13720 6.41300 6.59487 7.03522 7.17049 7.44514 7.86832 8.39430 9.21222 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.035414 B = 0.001712 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.456172 B =16349.136882 C =16560.703702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.141 3.859 5 N -0.368 5.368 6 C 0.087 3.913 7 C -0.299 4.299 8 C 0.307 3.693 9 N -0.639 5.639 10 C 0.712 3.288 11 O -0.599 6.599 12 N -0.716 5.716 13 C 0.182 3.818 14 C -0.125 4.125 15 C 0.145 3.855 16 N -0.608 5.608 17 C -0.265 4.265 18 H 0.067 0.933 19 C -0.048 4.048 20 N -0.934 5.934 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.276 1.276 25 C 0.179 3.821 26 C -0.129 4.129 27 N -0.348 5.348 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.220 0.780 36 H 0.154 0.846 37 H 0.423 0.577 38 H 0.412 0.588 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.009 0.991 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.004 1.004 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.070 -27.142 0.934 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.022 4.022 4 C 0.020 3.980 5 N -0.153 5.153 6 C -0.059 4.059 7 C -0.329 4.329 8 C 0.050 3.950 9 N -0.292 5.292 10 C 0.411 3.589 11 O -0.477 6.477 12 N -0.371 5.371 13 C 0.077 3.923 14 C -0.165 4.165 15 C 0.019 3.981 16 N -0.332 5.332 17 C -0.395 4.395 18 H 0.085 0.915 19 C -0.243 4.243 20 N -0.580 5.580 21 Si 0.796 3.204 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.202 1.202 25 C 0.052 3.948 26 C -0.168 4.168 27 N -0.179 5.179 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.172 0.828 37 H 0.261 0.739 38 H 0.249 0.751 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.027 0.973 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.098 -27.911 0.925 31.746 hybrid contribution 0.073 1.936 -0.395 1.977 sum -15.025 -25.975 0.530 30.012 Atomic orbital electron populations 1.22956 0.78890 1.04237 1.00810 1.87748 1.21837 1.27087 1.95654 1.22584 0.93257 0.85063 1.01275 1.21598 0.91908 0.77567 1.06886 1.48165 1.34844 1.11450 1.20852 1.23147 0.92349 0.94410 0.95957 1.21906 1.10876 0.98364 1.01787 1.19069 0.96219 0.86308 0.93375 1.41483 1.46674 1.09192 1.31820 1.15796 0.79980 0.80338 0.82779 1.90853 1.46781 1.81873 1.28206 1.45105 1.48545 1.11062 1.32355 1.20583 0.92214 0.84851 0.94604 1.22199 0.99035 0.96999 0.98259 1.20967 0.95191 0.92083 0.89909 1.44332 1.70020 1.02859 1.15976 1.19486 1.07251 0.83050 1.29713 0.91544 1.25790 0.94587 1.01585 1.02383 1.70173 1.07700 1.37454 1.42704 0.85340 0.76984 0.80101 0.77981 1.20364 1.22107 1.20223 1.20564 0.91446 0.92315 0.90452 1.22274 1.01212 0.96580 0.96761 1.77222 1.27113 0.96845 1.16691 0.93206 0.93541 0.87712 0.92734 0.93060 0.88558 0.84492 0.76352 0.82814 0.73910 0.75090 0.91903 0.91566 0.92073 0.97271 0.92470 0.94042 0.98572 0.91860 0.90379 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.40 -5.42 10.70 -148.98 -1.59 -7.02 16 3 C 0.06 0.73 6.12 71.98 0.44 1.17 16 4 C 0.14 1.59 6.88 86.38 0.59 2.18 16 5 N -0.37 -6.64 3.68 -348.10 -1.28 -7.92 16 6 C 0.09 1.52 11.44 83.52 0.96 2.48 16 7 C -0.30 -7.73 9.61 22.11 0.21 -7.52 16 8 C 0.31 8.05 8.11 133.32 1.08 9.13 16 9 N -0.64 -15.13 5.45 -321.24 -1.75 -16.88 16 10 C 0.71 20.46 8.50 179.06 1.52 21.98 16 11 O -0.60 -21.76 13.13 -3.99 -0.05 -21.81 16 12 N -0.72 -18.28 5.08 -457.68 -2.33 -20.61 16 13 C 0.18 6.00 2.42 45.02 0.11 6.11 16 14 C -0.12 -4.36 5.65 30.67 0.17 -4.19 16 15 C 0.14 6.19 6.52 86.36 0.56 6.75 16 16 N -0.61 -30.35 2.99 -699.10 -2.09 -32.44 16 17 C -0.26 -14.44 9.58 84.03 0.81 -13.64 16 18 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 19 C -0.05 -2.64 4.92 84.86 0.42 -2.23 16 20 N -0.93 -54.73 11.19 21.65 0.24 -54.49 16 21 Si 0.97 44.28 29.59 68.60 2.03 46.30 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 25 C 0.18 8.39 5.30 86.36 0.46 8.85 16 26 C -0.13 -4.43 5.55 30.67 0.17 -4.26 16 27 N -0.35 -8.32 12.43 -54.44 -0.68 -9.00 16 28 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.14 0.71 8.07 -2.39 -0.02 0.69 16 35 H 0.22 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.15 4.71 5.91 -2.91 -0.02 4.69 16 37 H 0.42 7.25 8.84 -92.70 -0.82 6.43 16 38 H 0.41 7.67 8.62 -92.70 -0.80 6.87 16 39 H 0.06 2.40 7.57 -2.39 -0.02 2.38 16 40 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.06 2.39 7.93 -2.39 -0.02 2.37 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 46 H 0.06 3.34 6.06 -2.39 -0.01 3.32 16 47 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -73.86 392.13 0.61 -73.25 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: -0.64 Total: 22.31 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 8.75 Total: 28.31 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -7.88 Total: -141.34 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -1.65 Total: -28.83 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.86 0.61 -73.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.034 kcal (2) G-P(sol) polarization free energy of solvation -73.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds