Wall clock time and date at job start Tue Mar 31 2020 20:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46844 * 111.00052 * 2 1 4 4 C 1.53039 * 109.52807 * 185.84025 * 3 2 1 5 5 C 1.53126 * 109.27615 * 300.81775 * 4 3 2 6 6 O 1.42895 * 109.52126 * 297.68602 * 5 4 3 7 7 C 1.52995 * 109.52488 * 177.55921 * 5 4 3 8 8 N 1.46494 * 109.47240 * 185.12656 * 7 5 4 9 9 C 1.34780 * 120.00332 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00292 * 180.02562 * 9 8 7 12 12 C 1.40201 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.40396 * 125.97176 * 359.97438 * 12 11 9 14 14 C 1.35243 * 107.86896 * 179.97438 * 13 12 11 15 15 N 1.34962 * 107.85356 * 0.22585 * 14 13 12 16 16 C 1.46501 * 125.97082 * 179.76577 * 15 14 13 17 17 C 1.50703 * 109.46706 * 125.00181 * 16 15 14 18 18 H 1.07992 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00333 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47276 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47061 * 120.00332 * 21 19 17 24 24 H 1.48495 * 109.47500 * 240.00143 * 21 19 17 25 25 N 1.31202 * 125.97171 * 179.97438 * 12 11 9 26 26 C 1.53124 * 109.21133 * 57.61945 * 5 4 3 27 27 C 1.46852 * 111.00280 * 124.20412 * 2 1 3 28 28 H 1.08999 * 109.47187 * 60.00597 * 1 2 3 29 29 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47119 * 300.00036 * 1 2 3 31 31 H 1.08997 * 109.46823 * 65.82044 * 3 2 1 32 32 H 1.09001 * 109.45020 * 305.84582 * 3 2 1 33 33 H 1.08998 * 109.51047 * 180.87845 * 4 3 2 34 34 H 1.09001 * 109.50612 * 60.75731 * 4 3 2 35 35 H 0.96698 * 114.00138 * 179.87243 * 6 5 4 36 36 H 1.08998 * 109.47062 * 65.12266 * 7 5 4 37 37 H 1.09009 * 109.46975 * 305.12675 * 7 5 4 38 38 H 0.96998 * 120.00015 * 359.97438 * 8 7 5 39 39 H 0.96998 * 120.00056 * 359.97438 * 11 9 8 40 40 H 1.08003 * 126.06768 * 359.93842 * 13 12 11 41 41 H 1.08002 * 126.06857 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47836 * 245.00121 * 16 15 14 43 43 H 1.08997 * 109.47518 * 5.00660 * 16 15 14 44 44 H 0.96995 * 120.00331 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.50031 * 62.31858 * 26 5 4 46 46 H 1.08994 * 109.50044 * 182.43930 * 26 5 4 47 47 H 1.09001 * 109.46071 * 294.18104 * 27 2 1 48 48 H 1.09004 * 109.46109 * 54.15796 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1914 2.2487 7 6 5.6361 0.4451 0.8407 8 7 6.1955 -0.4191 1.8829 9 6 7.5229 -0.6480 1.9279 10 8 8.2562 -0.1369 1.1036 11 7 8.0375 -1.4435 2.8864 12 6 9.4184 -1.6812 2.9335 13 6 10.3758 -1.1583 2.0497 14 6 11.5883 -1.6209 2.4303 15 7 11.4096 -2.4109 3.5099 16 6 12.4624 -3.1209 4.2404 17 6 12.4027 -2.7454 5.6987 18 1 11.6552 -2.0480 6.0465 19 6 13.3020 -3.2931 6.5889 20 7 14.2121 -4.1427 6.1654 21 14 13.2286 -2.8270 8.3964 22 1 12.1225 -1.8602 8.6138 23 1 12.9887 -4.0445 9.2121 24 1 14.5157 -2.2064 8.8003 25 7 10.0418 -2.4312 3.8111 26 6 3.5183 -0.8715 1.0226 27 6 1.9953 -0.7707 1.1338 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7324 1.8609 0.9375 32 1 1.5634 1.9255 -0.8331 33 1 3.9099 2.3513 -0.1311 34 1 3.7814 0.8568 -1.0906 35 1 4.1675 0.7391 3.0289 36 1 6.0720 1.4408 0.9215 37 1 5.8648 0.0268 -0.1396 38 1 5.6105 -0.8265 2.5407 39 1 7.4526 -1.8509 3.5442 40 1 10.1789 -0.5033 1.2138 41 1 12.5315 -1.4008 1.9524 42 1 12.3157 -4.1959 4.1358 43 1 13.4356 -2.8458 3.8340 44 1 14.8449 -4.5277 6.7916 45 1 3.7816 -1.3846 0.0976 46 1 3.9101 -1.4291 1.8731 47 1 1.7324 -0.2707 2.0661 48 1 1.5636 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610325905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:43 Heat of formation + Delta-G solvation = 12.623132 kcal Electronic energy + Delta-G solvation = -28799.357444 eV Core-core repulsion = 24698.432363 eV Total energy + Delta-G solvation = -4100.925081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.89082 -40.34288 -39.32418 -37.00381 -34.82929 -34.45291 -33.34277 -32.56112 -31.38975 -30.88094 -29.30575 -28.32238 -26.60330 -25.23508 -23.90046 -23.11415 -22.27951 -21.49363 -20.42380 -20.27205 -19.89715 -18.27223 -16.98555 -16.82159 -16.57802 -16.09968 -15.87371 -15.76571 -15.50208 -15.18306 -14.95481 -14.63521 -14.51044 -14.19343 -13.92816 -13.82054 -13.64582 -12.94953 -12.91290 -12.77947 -12.58509 -12.32561 -12.22237 -12.04784 -11.84409 -11.77615 -11.67663 -11.55665 -11.05715 -10.89052 -10.83444 -10.43508 -10.28038 -10.26328 -10.10942 -9.70613 -9.49122 -9.32599 -8.75650 -8.63733 -8.10509 -7.41906 -6.24324 -4.29209 2.31100 2.65344 3.09823 3.21944 3.29507 3.35704 3.45054 3.56080 3.73315 3.83808 4.12326 4.19181 4.25415 4.31752 4.36351 4.66799 4.83320 4.88503 5.01593 5.03680 5.10841 5.15826 5.16459 5.30871 5.36389 5.41225 5.43655 5.49762 5.58589 5.58663 5.64250 5.79640 5.81261 6.12111 6.25122 6.52400 6.54915 6.59948 6.62127 6.86145 6.98261 7.09146 7.14698 7.48410 7.69661 7.80645 7.95117 8.06824 8.54442 8.66219 8.81309 9.36406 10.84392 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.001851 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.195715 B =15123.448049 C =15672.266211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.059 3.941 4 C -0.100 4.100 5 C 0.123 3.877 6 O -0.553 6.553 7 C 0.116 3.884 8 N -0.746 5.746 9 C 0.714 3.286 10 O -0.564 6.564 11 N -0.643 5.643 12 C 0.275 3.725 13 C -0.286 4.286 14 C 0.051 3.949 15 N -0.320 5.320 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.307 5.307 26 C -0.143 4.143 27 C 0.059 3.941 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.375 0.625 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.392 0.608 39 H 0.406 0.594 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.266 0.734 45 H 0.086 0.914 46 H 0.070 0.930 47 H 0.040 0.960 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.665 8.490 -12.328 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.069 4.069 4 C -0.138 4.138 5 C 0.082 3.918 6 O -0.359 6.359 7 C -0.008 4.008 8 N -0.404 5.404 9 C 0.413 3.587 10 O -0.439 6.439 11 N -0.293 5.293 12 C 0.021 3.979 13 C -0.318 4.318 14 C -0.099 4.099 15 N -0.102 5.102 16 C 0.140 3.860 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.139 5.139 26 C -0.181 4.181 27 C -0.069 4.069 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.222 0.778 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.227 0.773 39 H 0.240 0.760 40 H 0.178 0.822 41 H 0.185 0.815 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.004 8.241 -12.794 29.272 hybrid contribution -0.335 0.148 2.141 2.172 sum -25.340 8.389 -10.654 28.740 Atomic orbital electron populations 1.22337 0.87156 1.02086 1.00705 1.61957 1.07699 1.13973 1.43307 1.22009 0.94677 0.89096 1.01138 1.21534 0.94948 1.00876 0.96422 1.21532 0.91839 0.92366 0.86074 1.86579 1.79973 1.53905 1.15399 1.21924 0.92314 0.95175 0.91437 1.44997 1.05968 1.54462 1.34965 1.15580 0.82028 0.79522 0.81549 1.90882 1.57861 1.53964 1.41201 1.41355 1.05060 1.50607 1.32254 1.18771 0.83155 0.99404 0.96595 1.21506 0.89965 1.12996 1.07297 1.22557 0.99761 0.95976 0.91581 1.49051 1.04384 1.35360 1.21400 1.19743 0.81842 0.92348 0.92021 1.21305 1.16485 1.27429 0.91359 0.91251 1.24950 0.94850 0.94661 0.99672 1.69924 1.18241 1.29636 1.35550 0.86278 0.78047 0.78438 0.83761 1.19589 1.20724 1.20767 1.77315 0.89663 1.24656 1.22222 1.22278 0.95492 0.96653 1.03693 1.22003 0.94685 0.98230 0.92002 0.91294 0.91376 0.95656 0.93778 0.90615 0.90145 0.89303 0.77782 0.90350 0.90311 0.77344 0.75960 0.82210 0.81514 0.93737 0.92519 0.92393 0.89547 0.91114 0.94132 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.59 60.06 0.58 0.72 16 2 N -0.54 -3.73 4.91 -242.96 -1.19 -4.93 16 3 C 0.06 0.39 5.33 -3.83 -0.02 0.37 16 4 C -0.10 -0.65 5.11 -26.65 -0.14 -0.78 16 5 C 0.12 0.81 0.72 -90.49 -0.07 0.74 16 6 O -0.55 -3.97 11.85 -35.23 -0.42 -4.38 16 7 C 0.12 0.97 4.85 -4.05 -0.02 0.95 16 8 N -0.75 -6.70 5.05 -65.23 -0.33 -7.03 16 9 C 0.71 10.09 8.53 -86.92 -0.74 9.35 16 10 O -0.56 -10.04 13.47 5.28 0.07 -9.96 16 11 N -0.64 -9.69 5.45 -15.51 -0.08 -9.77 16 12 C 0.27 5.50 8.11 -154.36 -1.25 4.25 16 13 C -0.29 -5.73 9.61 -39.84 -0.38 -6.11 16 14 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 15 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 16 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 17 C -0.53 -14.67 9.23 -34.44 -0.32 -14.99 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 21 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 N -0.31 -7.05 12.42 31.44 0.39 -6.66 16 26 C -0.14 -0.85 4.81 -26.65 -0.13 -0.97 16 27 C 0.06 0.37 5.33 -3.83 -0.02 0.35 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.04 0.35 7.76 -51.93 -0.40 -0.06 16 32 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.37 1.78 8.20 45.56 0.37 2.16 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.39 2.32 6.41 -40.82 -0.26 2.06 16 39 H 0.41 4.83 8.84 -40.82 -0.36 4.47 16 40 H 0.16 3.15 5.91 -52.48 -0.31 2.84 16 41 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 42 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 44 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.33 6.67 -51.93 -0.35 -0.01 16 47 H 0.04 0.28 7.76 -51.93 -0.40 -0.12 16 48 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 LS Contribution 388.57 15.07 5.86 5.86 Total: -1.00 -34.07 388.57 -9.80 -43.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.74 Total: 6.12 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.83 Total: 2.82 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.71 Total: -60.63 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.35 Total: -14.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.07 -9.80 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610325905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.491 kcal (2) G-P(sol) polarization free energy of solvation -34.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds