Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46844 * 111.00052 * 2 1 4 4 C 1.53039 * 109.52807 * 185.84025 * 3 2 1 5 5 C 1.53126 * 109.27615 * 300.81775 * 4 3 2 6 6 O 1.42895 * 109.52126 * 297.68602 * 5 4 3 7 7 C 1.52995 * 109.52488 * 177.55921 * 5 4 3 8 8 N 1.46494 * 109.47240 * 185.12656 * 7 5 4 9 9 C 1.34780 * 120.00332 * 179.97438 * 8 7 5 10 10 O 1.21596 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34768 * 120.00292 * 180.02562 * 9 8 7 12 12 C 1.40201 * 120.00142 * 180.02562 * 11 9 8 13 13 C 1.40396 * 125.97176 * 359.97438 * 12 11 9 14 14 C 1.35243 * 107.86896 * 179.97438 * 13 12 11 15 15 N 1.34962 * 107.85356 * 0.22585 * 14 13 12 16 16 C 1.46501 * 125.97082 * 179.76577 * 15 14 13 17 17 C 1.50703 * 109.46706 * 125.00181 * 16 15 14 18 18 H 1.07992 * 120.00189 * 0.02562 * 17 16 15 19 19 C 1.37883 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00333 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47276 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47061 * 120.00332 * 21 19 17 24 24 H 1.48495 * 109.47500 * 240.00143 * 21 19 17 25 25 N 1.31202 * 125.97171 * 179.97438 * 12 11 9 26 26 C 1.53124 * 109.21133 * 57.61945 * 5 4 3 27 27 C 1.46852 * 111.00280 * 124.20412 * 2 1 3 28 28 H 1.08999 * 109.47187 * 60.00597 * 1 2 3 29 29 H 1.09002 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47119 * 300.00036 * 1 2 3 31 31 H 1.08997 * 109.46823 * 65.82044 * 3 2 1 32 32 H 1.09001 * 109.45020 * 305.84582 * 3 2 1 33 33 H 1.08998 * 109.51047 * 180.87845 * 4 3 2 34 34 H 1.09001 * 109.50612 * 60.75731 * 4 3 2 35 35 H 0.96698 * 114.00138 * 179.87243 * 6 5 4 36 36 H 1.08998 * 109.47062 * 65.12266 * 7 5 4 37 37 H 1.09009 * 109.46975 * 305.12675 * 7 5 4 38 38 H 0.96998 * 120.00015 * 359.97438 * 8 7 5 39 39 H 0.96998 * 120.00056 * 359.97438 * 11 9 8 40 40 H 1.08003 * 126.06768 * 359.93842 * 13 12 11 41 41 H 1.08002 * 126.06857 * 179.97438 * 14 13 12 42 42 H 1.09000 * 109.47836 * 245.00121 * 16 15 14 43 43 H 1.08997 * 109.47518 * 5.00660 * 16 15 14 44 44 H 0.96995 * 120.00331 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.50031 * 62.31858 * 26 5 4 46 46 H 1.08994 * 109.50044 * 182.43930 * 26 5 4 47 47 H 1.09001 * 109.46071 * 294.18104 * 27 2 1 48 48 H 1.09004 * 109.46109 * 54.15796 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3343 -0.1468 5 6 4.1188 0.5371 1.0144 6 8 3.8183 1.1914 2.2487 7 6 5.6361 0.4451 0.8407 8 7 6.1955 -0.4191 1.8829 9 6 7.5229 -0.6480 1.9279 10 8 8.2562 -0.1369 1.1036 11 7 8.0375 -1.4435 2.8864 12 6 9.4184 -1.6812 2.9335 13 6 10.3758 -1.1583 2.0497 14 6 11.5883 -1.6209 2.4303 15 7 11.4096 -2.4109 3.5099 16 6 12.4624 -3.1209 4.2404 17 6 12.4027 -2.7454 5.6987 18 1 11.6552 -2.0480 6.0465 19 6 13.3020 -3.2931 6.5889 20 7 14.2121 -4.1427 6.1654 21 14 13.2286 -2.8270 8.3964 22 1 12.1225 -1.8602 8.6138 23 1 12.9887 -4.0445 9.2121 24 1 14.5157 -2.2064 8.8003 25 7 10.0418 -2.4312 3.8111 26 6 3.5183 -0.8715 1.0226 27 6 1.9953 -0.7707 1.1338 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7324 1.8609 0.9375 32 1 1.5634 1.9255 -0.8331 33 1 3.9099 2.3513 -0.1311 34 1 3.7814 0.8568 -1.0906 35 1 4.1675 0.7391 3.0289 36 1 6.0720 1.4408 0.9215 37 1 5.8648 0.0268 -0.1396 38 1 5.6105 -0.8265 2.5407 39 1 7.4526 -1.8509 3.5442 40 1 10.1789 -0.5033 1.2138 41 1 12.5315 -1.4008 1.9524 42 1 12.3157 -4.1959 4.1358 43 1 13.4356 -2.8458 3.8340 44 1 14.8449 -4.5277 6.7916 45 1 3.7816 -1.3846 0.0976 46 1 3.9101 -1.4291 1.8731 47 1 1.7324 -0.2707 2.0661 48 1 1.5636 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610325905.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -13.895276 kcal Electronic energy + Delta-G solvation = -28800.507368 eV Core-core repulsion = 24698.432363 eV Total energy + Delta-G solvation = -4102.075006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.23830 -41.30352 -40.35722 -37.61157 -36.23526 -35.43967 -35.18751 -33.25803 -32.57878 -31.87851 -30.93099 -29.17451 -28.31735 -25.92865 -24.96290 -24.35934 -23.22041 -22.47854 -21.89654 -21.30978 -20.80095 -19.41632 -18.68667 -18.27236 -17.46058 -17.28077 -16.85476 -16.71756 -16.45283 -16.05906 -15.97120 -15.76017 -15.59892 -15.50596 -15.07066 -14.65062 -14.42538 -14.30549 -14.18014 -13.79146 -13.72802 -13.48255 -13.42371 -13.08870 -12.92357 -12.72926 -12.52163 -12.35089 -12.30021 -12.21196 -12.06217 -12.04250 -11.64344 -11.39691 -11.36279 -11.13167 -10.83436 -10.71723 -10.27841 -9.71591 -9.26453 -9.04781 -8.32134 -6.46172 1.07351 1.12365 1.37681 1.39132 1.52154 1.70712 2.09972 2.36380 2.41106 2.97795 2.99370 3.10478 3.24846 3.51827 3.69397 3.79769 3.98330 4.18317 4.29295 4.34227 4.37613 4.48400 4.56231 4.62592 4.63916 4.71233 4.78355 4.82480 4.90578 4.91270 4.95592 4.97499 5.03454 5.03655 5.08309 5.13015 5.13646 5.29708 5.39140 5.57849 5.75111 5.86700 5.97984 6.12261 6.13468 6.30315 6.64049 6.70278 6.74544 7.14750 7.23805 7.40895 8.75465 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.001851 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.195715 B =15123.448049 C =15672.266211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.554 5.554 3 C 0.062 3.938 4 C -0.102 4.102 5 C 0.134 3.866 6 O -0.563 6.563 7 C 0.119 3.881 8 N -0.720 5.720 9 C 0.713 3.287 10 O -0.600 6.600 11 N -0.635 5.635 12 C 0.285 3.715 13 C -0.293 4.293 14 C 0.056 3.944 15 N -0.345 5.345 16 C 0.272 3.728 17 C -0.546 4.546 18 H 0.052 0.948 19 C 0.018 3.982 20 N -0.920 5.920 21 Si 0.972 3.028 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.271 1.271 25 N -0.347 5.347 26 C -0.140 4.140 27 C 0.059 3.941 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.385 0.615 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.421 0.579 40 H 0.166 0.834 41 H 0.200 0.800 42 H 0.022 0.978 43 H 0.058 0.942 44 H 0.272 0.728 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.035 0.965 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.963 8.976 -12.116 30.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.066 4.066 4 C -0.140 4.140 5 C 0.093 3.907 6 O -0.371 6.371 7 C -0.005 4.005 8 N -0.378 5.378 9 C 0.412 3.588 10 O -0.478 6.478 11 N -0.287 5.287 12 C 0.029 3.971 13 C -0.324 4.324 14 C -0.092 4.092 15 N -0.127 5.127 16 C 0.153 3.847 17 C -0.584 4.584 18 H 0.071 0.929 19 C -0.182 4.182 20 N -0.559 5.559 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.196 1.196 25 N -0.178 5.178 26 C -0.178 4.178 27 C -0.069 4.069 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.234 0.766 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.259 0.741 40 H 0.184 0.816 41 H 0.217 0.783 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.103 0.897 47 H 0.053 0.947 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -26.373 8.723 -12.575 30.492 hybrid contribution -0.052 0.051 1.973 1.974 sum -26.424 8.774 -10.602 29.793 Atomic orbital electron populations 1.22374 0.86484 1.02567 1.00905 1.61999 1.08452 1.13952 1.43529 1.21976 0.94709 0.89148 1.00782 1.21570 0.94939 1.00961 0.96571 1.21414 0.90271 0.92906 0.86108 1.86577 1.80084 1.54449 1.15940 1.21983 0.93407 0.94164 0.90947 1.44783 1.04244 1.53580 1.35180 1.15745 0.83228 0.78993 0.80798 1.90854 1.59218 1.55237 1.42451 1.41334 1.03427 1.50861 1.33031 1.19069 0.85111 0.97640 0.95302 1.21681 0.90054 1.13180 1.07521 1.23150 1.01366 0.94423 0.90307 1.48808 1.04333 1.36915 1.22632 1.19340 0.82646 0.91291 0.91401 1.21437 1.16466 1.27606 0.92928 0.92930 1.25741 0.94302 0.94385 1.03818 1.69998 1.18670 1.30143 1.37123 0.85293 0.78200 0.78253 0.78609 1.19904 1.19856 1.19594 1.77235 0.89814 1.26695 1.24047 1.22264 0.95343 0.96086 1.04117 1.22015 0.94837 0.98416 0.91615 0.90691 0.90776 0.95872 0.95062 0.89849 0.90162 0.88885 0.76576 0.91586 0.90565 0.75171 0.74147 0.81645 0.78300 0.96017 0.92378 0.91867 0.89976 0.89656 0.94681 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.59 127.69 1.22 1.46 16 2 N -0.55 -6.78 4.91 -922.59 -4.53 -11.31 16 3 C 0.06 0.75 5.33 86.33 0.46 1.21 16 4 C -0.10 -1.20 5.11 30.65 0.16 -1.04 16 5 C 0.13 1.54 0.72 -10.71 -0.01 1.53 16 6 O -0.56 -7.08 11.85 -148.98 -1.76 -8.85 16 7 C 0.12 1.82 4.85 86.38 0.42 2.24 16 8 N -0.72 -11.52 5.05 -478.54 -2.42 -13.94 16 9 C 0.71 19.13 8.53 179.06 1.53 20.66 16 10 O -0.60 -20.79 13.47 -4.02 -0.05 -20.84 16 11 N -0.63 -18.34 5.45 -321.24 -1.75 -20.09 16 12 C 0.28 11.25 8.11 133.31 1.08 12.33 16 13 C -0.29 -11.55 9.61 22.10 0.21 -11.34 16 14 C 0.06 2.22 11.44 83.52 0.96 3.18 16 15 N -0.34 -16.22 3.67 -351.84 -1.29 -17.51 16 16 C 0.27 14.12 6.26 85.63 0.54 14.66 16 17 C -0.55 -30.81 9.23 25.60 0.24 -30.57 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 19 C 0.02 0.98 5.46 84.66 0.46 1.44 16 20 N -0.92 -52.07 13.29 21.45 0.28 -51.78 16 21 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 25 N -0.35 -16.02 12.42 -54.44 -0.68 -16.69 16 26 C -0.14 -1.37 4.81 30.65 0.15 -1.22 16 27 C 0.06 0.65 5.33 86.33 0.46 1.11 16 28 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 30 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.03 0.46 7.76 -2.39 -0.02 0.44 16 32 H 0.08 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.39 2.80 8.20 -74.06 -0.61 2.19 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 38 H 0.41 3.77 6.41 -92.71 -0.59 3.17 16 39 H 0.42 9.34 8.84 -92.71 -0.82 8.52 16 40 H 0.17 6.39 5.91 -2.91 -0.02 6.37 16 41 H 0.20 6.27 8.06 -2.91 -0.02 6.24 16 42 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 2.95 8.07 -2.39 -0.02 2.93 16 44 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.09 0.56 6.67 -2.39 -0.02 0.55 16 47 H 0.03 0.43 7.76 -2.39 -0.02 0.41 16 48 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 Total: -1.00 -73.10 388.57 -3.32 -76.43 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -1.02 Total: 23.39 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.87 Total: 15.65 kcal Atomic # 7 Polarization: -120.95 SS G_CDS: -10.38 Total: -131.33 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.82 Total: -29.69 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -73.10 -3.32 -76.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610325905.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.533 kcal (2) G-P(sol) polarization free energy of solvation -73.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds