Wall clock time and date at job start Tue Mar 31 2020 20:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47138 * 2 1 4 4 C 1.46892 * 111.00168 * 297.18862 * 3 2 1 5 5 C 1.53006 * 109.46975 * 296.73731 * 4 3 2 6 6 C 1.46912 * 110.99809 * 61.13997 * 3 2 1 7 7 C 1.52998 * 109.47007 * 77.69039 * 6 3 2 8 8 H 1.09000 * 109.47141 * 55.83183 * 7 6 3 9 9 C 1.52998 * 109.46951 * 175.83393 * 7 6 3 10 10 N 1.46507 * 109.47191 * 295.82995 * 7 6 3 11 11 C 1.34775 * 119.99681 * 145.61369 * 10 7 6 12 12 O 1.21365 * 120.00385 * 0.02562 * 11 10 7 13 13 C 1.49308 * 119.99797 * 180.02562 * 11 10 7 14 14 O 1.21402 * 120.00045 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99959 * 180.02562 * 13 11 10 16 16 C 1.40301 * 120.00085 * 180.02562 * 15 13 11 17 17 C 1.40718 * 126.09856 * 359.97062 * 16 15 13 18 18 N 1.30880 * 108.37623 * 179.74302 * 17 16 15 19 19 N 1.40058 * 108.43255 * 0.43805 * 18 17 16 20 20 C 1.37297 * 126.05435 * 179.81188 * 19 18 17 21 21 H 1.07997 * 119.99751 * 179.69073 * 20 19 18 22 22 C 1.39010 * 119.99763 * 359.97411 * 20 19 18 23 23 N 1.31281 * 120.00201 * 359.72542 * 22 20 19 24 24 Si 1.86797 * 119.99811 * 179.71816 * 22 20 19 25 25 H 1.48505 * 109.47110 * 60.00218 * 24 22 20 26 26 H 1.48501 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47460 * 300.00224 * 24 22 20 28 28 C 1.35788 * 126.10016 * 179.97438 * 16 15 13 29 29 H 1.09005 * 109.47137 * 302.01992 * 1 2 3 30 30 H 1.09002 * 109.47296 * 62.02263 * 1 2 3 31 31 H 1.09003 * 109.47151 * 182.01910 * 1 2 3 32 32 H 1.09005 * 109.47561 * 240.00330 * 2 1 3 33 33 H 1.08994 * 109.47563 * 120.00048 * 2 1 3 34 34 H 1.09000 * 109.47812 * 56.74187 * 4 3 2 35 35 H 1.09009 * 109.47340 * 176.74343 * 4 3 2 36 36 H 1.08997 * 109.47303 * 185.78470 * 5 4 3 37 37 H 1.08991 * 109.47468 * 305.78878 * 5 4 3 38 38 H 1.09002 * 109.46761 * 65.79365 * 5 4 3 39 39 H 1.09000 * 109.46738 * 317.69193 * 6 3 2 40 40 H 1.09001 * 109.47067 * 197.69029 * 6 3 2 41 41 H 1.09001 * 109.46852 * 300.00130 * 9 7 6 42 42 H 1.09000 * 109.47369 * 59.99930 * 9 7 6 43 43 H 1.09000 * 109.47134 * 180.02562 * 9 7 6 44 44 H 0.96996 * 120.00107 * 325.62006 * 10 7 6 45 45 H 0.97001 * 120.00030 * 359.97438 * 15 13 11 46 46 H 1.08007 * 125.81132 * 0.02848 * 17 16 15 47 47 H 0.97000 * 120.00249 * 180.02562 * 23 22 20 48 48 H 1.07993 * 126.25208 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6044 2.0902 -1.2198 5 6 2.2385 1.4172 -2.4389 6 6 1.5710 2.1020 1.2012 7 6 2.4331 1.6865 2.3949 8 1 3.4834 1.8640 2.1639 9 6 2.0348 2.5086 3.6223 10 7 2.2281 0.2628 2.6733 11 6 3.2513 -0.4897 3.1244 12 8 4.3422 0.0122 3.3004 13 6 3.0426 -1.9407 3.4075 14 8 1.9515 -2.4429 3.2311 15 7 4.0655 -2.6931 3.8591 16 6 3.8696 -4.0567 4.1247 17 6 2.6655 -4.7675 3.9666 18 7 2.8742 -6.0137 4.3077 19 7 4.2106 -6.1463 4.7051 20 6 4.8143 -7.3010 5.1378 21 1 5.8576 -7.2930 5.4168 22 6 4.0841 -8.4816 5.2110 23 7 2.8160 -8.4913 4.8716 24 14 4.9075 -10.0544 5.7922 25 1 5.4205 -9.8636 7.1727 26 1 3.9204 -11.1638 5.7794 27 1 6.0363 -10.3863 4.8862 28 6 4.8081 -4.9260 4.5802 29 1 -0.3634 0.5449 0.8714 30 1 -0.3634 0.4821 -0.9076 31 1 -0.3633 -1.0271 0.0362 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5186 2.0542 -1.3087 35 1 1.9304 3.1291 -1.1678 36 1 2.0148 1.9995 -3.3327 37 1 3.3183 1.3614 -2.3024 38 1 1.8337 0.4113 -2.5500 39 1 0.5284 1.8561 1.4029 40 1 1.6665 3.1758 1.0403 41 1 2.1872 3.5678 3.4151 42 1 0.9845 2.3310 3.8534 43 1 2.6493 2.2129 4.4726 44 1 1.3562 -0.1382 2.5329 45 1 4.9375 -2.2920 3.9997 46 1 1.7297 -4.3559 3.6182 47 1 2.3064 -9.3150 4.9231 48 1 5.8390 -4.6939 4.8030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746381600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:24 Heat of formation + Delta-G solvation = 29.593617 kcal Electronic energy + Delta-G solvation = -29542.105503 eV Core-core repulsion = 25441.916317 eV Total energy + Delta-G solvation = -4100.189186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66289 -39.70408 -38.80886 -37.80208 -35.61377 -34.29757 -33.17677 -31.74757 -31.47789 -30.31499 -29.35961 -28.03490 -25.79548 -25.42271 -24.39438 -23.75678 -21.42555 -20.93010 -20.51599 -20.04061 -19.44484 -18.04071 -17.45532 -16.85336 -16.41486 -15.97523 -15.54909 -15.46206 -15.17642 -15.09812 -14.65726 -14.20442 -13.98940 -13.85345 -13.58598 -13.25902 -13.15558 -13.05383 -12.97344 -12.73274 -12.44600 -12.33455 -12.19059 -11.74454 -11.71930 -11.66722 -11.54734 -11.30100 -11.26805 -11.19533 -11.10603 -10.87119 -10.78250 -10.57918 -10.27595 -9.22112 -9.15499 -9.08533 -8.86906 -8.47594 -8.12408 -6.77058 -6.59987 -4.27260 1.69358 2.63099 2.94858 3.03915 3.07510 3.34975 3.59605 3.73080 3.76442 3.98907 4.38068 4.52317 4.63975 4.70704 4.71728 4.93566 4.98569 5.01622 5.03208 5.06412 5.08903 5.18051 5.25163 5.27972 5.34504 5.43728 5.48947 5.70200 5.74462 5.79880 5.88464 5.92057 5.96330 6.13846 6.20876 6.29108 6.36808 6.76534 6.82319 6.84038 6.89096 6.93270 7.16832 7.23937 7.77616 7.88375 8.12610 8.19189 8.49840 8.70326 9.31728 9.60451 10.35752 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002273 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.400600 B =12315.284684 C =12928.181649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 N -0.532 5.532 4 C 0.047 3.953 5 C -0.150 4.150 6 C 0.038 3.962 7 C 0.143 3.857 8 H 0.105 0.895 9 C -0.164 4.164 10 N -0.696 5.696 11 C 0.516 3.484 12 O -0.525 6.525 13 C 0.482 3.518 14 O -0.525 6.525 15 N -0.583 5.583 16 C -0.068 4.068 17 C -0.027 4.027 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.078 4.078 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.064 0.936 44 H 0.410 0.590 45 H 0.409 0.591 46 H 0.177 0.823 47 H 0.276 0.724 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.761 19.890 -8.168 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.100 4.100 3 N -0.256 5.256 4 C -0.081 4.081 5 C -0.208 4.208 6 C -0.090 4.090 7 C 0.039 3.961 8 H 0.123 0.877 9 C -0.222 4.222 10 N -0.352 5.352 11 C 0.297 3.703 12 O -0.401 6.401 13 C 0.263 3.737 14 O -0.402 6.402 15 N -0.226 5.226 16 C -0.174 4.174 17 C -0.203 4.203 18 N -0.092 5.092 19 N 0.095 4.905 20 C -0.454 4.454 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.759 3.241 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.248 0.752 45 H 0.244 0.756 46 H 0.194 0.806 47 H 0.087 0.913 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.952 18.569 -8.064 20.458 hybrid contribution -0.128 0.231 0.140 0.299 sum -3.080 18.800 -7.924 20.633 Atomic orbital electron populations 1.22434 0.98254 1.03030 1.01607 1.22601 0.92967 0.89922 1.04489 1.62256 1.59476 1.02461 1.01385 1.22129 0.97861 0.97982 0.90099 1.21803 1.01973 1.00615 0.96413 1.22539 0.97506 0.98946 0.90017 1.21121 1.02403 0.79240 0.93379 0.87708 1.22170 1.02030 0.99921 0.98122 1.46013 1.13815 1.09956 1.65373 1.20254 0.84619 0.87694 0.77693 1.90726 1.24522 1.74021 1.50822 1.19708 0.85336 0.86780 0.81858 1.90648 1.24454 1.72760 1.52367 1.42154 1.12649 1.07652 1.60096 1.17250 0.96438 0.82790 1.20952 1.24140 0.98075 0.91459 1.06583 1.78259 0.93724 1.15625 1.21543 1.44551 1.06203 1.05044 1.34700 1.19875 0.96460 0.84085 1.45001 0.86492 1.25662 0.95473 1.00066 0.95916 1.70196 1.06545 1.28309 1.34384 0.85876 0.79076 0.79465 0.79643 1.19088 1.20109 1.19095 1.21310 0.98265 0.86899 1.16435 0.92442 0.92625 0.91373 0.90418 0.88951 0.94591 0.91018 0.92454 0.91678 0.92633 0.93131 0.89482 0.91319 0.92306 0.91650 0.75189 0.75596 0.80579 0.91317 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.71 9.25 37.16 0.34 -1.36 16 2 C 0.03 0.28 5.34 -3.83 -0.02 0.26 16 3 N -0.53 -4.87 4.65 -234.62 -1.09 -5.96 16 4 C 0.05 0.36 5.40 -3.83 -0.02 0.34 16 5 C -0.15 -1.14 9.61 37.16 0.36 -0.78 16 6 C 0.04 0.30 4.63 -3.82 -0.02 0.28 16 7 C 0.14 1.37 2.96 -67.93 -0.20 1.17 16 8 H 0.10 1.21 7.29 -51.93 -0.38 0.83 16 9 C -0.16 -1.32 9.52 37.16 0.35 -0.97 16 10 N -0.70 -8.20 2.93 -54.28 -0.16 -8.36 16 11 C 0.52 7.79 7.67 -11.65 -0.09 7.70 16 12 O -0.53 -8.70 15.99 5.48 0.09 -8.61 16 13 C 0.48 8.67 7.85 -11.65 -0.09 8.58 16 14 O -0.52 -10.41 13.62 5.45 0.07 -10.34 16 15 N -0.58 -11.02 5.45 -10.45 -0.06 -11.08 16 16 C -0.07 -1.58 6.90 -83.92 -0.58 -2.16 16 17 C -0.03 -0.69 10.85 -17.02 -0.18 -0.88 16 18 N -0.26 -7.46 10.39 30.81 0.32 -7.14 16 19 N -0.14 -3.76 3.73 -11.40 -0.04 -3.80 16 20 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 21 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.16 11.81 55.50 0.66 -20.51 16 24 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 26 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 28 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 29 H 0.06 0.47 6.01 -51.93 -0.31 0.16 16 30 H 0.05 0.45 6.50 -51.93 -0.34 0.11 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.82 6.38 -51.93 -0.33 0.49 16 33 H 0.09 1.11 4.63 -51.93 -0.24 0.87 16 34 H 0.04 0.26 6.26 -51.93 -0.32 -0.06 16 35 H 0.07 0.48 7.89 -51.92 -0.41 0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.45 6.72 -51.93 -0.35 0.10 16 39 H 0.05 0.37 5.60 -51.93 -0.29 0.08 16 40 H 0.09 0.54 7.74 -51.93 -0.40 0.14 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.41 4.64 6.85 -40.82 -0.28 4.37 16 45 H 0.41 6.73 8.29 -40.82 -0.34 6.39 16 46 H 0.18 4.40 5.92 -52.48 -0.31 4.09 16 47 H 0.28 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 385.79 15.07 5.81 5.81 Total: -1.00 -31.82 385.79 -6.82 -38.63 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -6.81 Total: 15.00 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -0.59 Total: 2.68 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.37 Total: -56.85 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: 0.16 Total: -18.95 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.82 -6.82 -38.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746381600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.228 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds