Wall clock time and date at job start Tue Mar 31 2020 20:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47138 * 2 1 4 4 C 1.46892 * 111.00168 * 297.18862 * 3 2 1 5 5 C 1.53006 * 109.46975 * 296.73731 * 4 3 2 6 6 C 1.46912 * 110.99809 * 61.13997 * 3 2 1 7 7 C 1.52998 * 109.47007 * 77.69039 * 6 3 2 8 8 H 1.09000 * 109.47141 * 55.83183 * 7 6 3 9 9 C 1.52998 * 109.46951 * 175.83393 * 7 6 3 10 10 N 1.46507 * 109.47191 * 295.82995 * 7 6 3 11 11 C 1.34775 * 119.99681 * 145.61369 * 10 7 6 12 12 O 1.21365 * 120.00385 * 0.02562 * 11 10 7 13 13 C 1.49308 * 119.99797 * 180.02562 * 11 10 7 14 14 O 1.21402 * 120.00045 * 0.02562 * 13 11 10 15 15 N 1.34773 * 119.99959 * 180.02562 * 13 11 10 16 16 C 1.40301 * 120.00085 * 180.02562 * 15 13 11 17 17 C 1.40718 * 126.09856 * 359.97062 * 16 15 13 18 18 N 1.30880 * 108.37623 * 179.74302 * 17 16 15 19 19 N 1.40058 * 108.43255 * 0.43805 * 18 17 16 20 20 C 1.37297 * 126.05435 * 179.81188 * 19 18 17 21 21 H 1.07997 * 119.99751 * 179.69073 * 20 19 18 22 22 C 1.39010 * 119.99763 * 359.97411 * 20 19 18 23 23 N 1.31281 * 120.00201 * 359.72542 * 22 20 19 24 24 Si 1.86797 * 119.99811 * 179.71816 * 22 20 19 25 25 H 1.48505 * 109.47110 * 60.00218 * 24 22 20 26 26 H 1.48501 * 109.47003 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47460 * 300.00224 * 24 22 20 28 28 C 1.35788 * 126.10016 * 179.97438 * 16 15 13 29 29 H 1.09005 * 109.47137 * 302.01992 * 1 2 3 30 30 H 1.09002 * 109.47296 * 62.02263 * 1 2 3 31 31 H 1.09003 * 109.47151 * 182.01910 * 1 2 3 32 32 H 1.09005 * 109.47561 * 240.00330 * 2 1 3 33 33 H 1.08994 * 109.47563 * 120.00048 * 2 1 3 34 34 H 1.09000 * 109.47812 * 56.74187 * 4 3 2 35 35 H 1.09009 * 109.47340 * 176.74343 * 4 3 2 36 36 H 1.08997 * 109.47303 * 185.78470 * 5 4 3 37 37 H 1.08991 * 109.47468 * 305.78878 * 5 4 3 38 38 H 1.09002 * 109.46761 * 65.79365 * 5 4 3 39 39 H 1.09000 * 109.46738 * 317.69193 * 6 3 2 40 40 H 1.09001 * 109.47067 * 197.69029 * 6 3 2 41 41 H 1.09001 * 109.46852 * 300.00130 * 9 7 6 42 42 H 1.09000 * 109.47369 * 59.99930 * 9 7 6 43 43 H 1.09000 * 109.47134 * 180.02562 * 9 7 6 44 44 H 0.96996 * 120.00107 * 325.62006 * 10 7 6 45 45 H 0.97001 * 120.00030 * 359.97438 * 15 13 11 46 46 H 1.08007 * 125.81132 * 0.02848 * 17 16 15 47 47 H 0.97000 * 120.00249 * 180.02562 * 23 22 20 48 48 H 1.07993 * 126.25208 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6044 2.0902 -1.2198 5 6 2.2385 1.4172 -2.4389 6 6 1.5710 2.1020 1.2012 7 6 2.4331 1.6865 2.3949 8 1 3.4834 1.8640 2.1639 9 6 2.0348 2.5086 3.6223 10 7 2.2281 0.2628 2.6733 11 6 3.2513 -0.4897 3.1244 12 8 4.3422 0.0122 3.3004 13 6 3.0426 -1.9407 3.4075 14 8 1.9515 -2.4429 3.2311 15 7 4.0655 -2.6931 3.8591 16 6 3.8696 -4.0567 4.1247 17 6 2.6655 -4.7675 3.9666 18 7 2.8742 -6.0137 4.3077 19 7 4.2106 -6.1463 4.7051 20 6 4.8143 -7.3010 5.1378 21 1 5.8576 -7.2930 5.4168 22 6 4.0841 -8.4816 5.2110 23 7 2.8160 -8.4913 4.8716 24 14 4.9075 -10.0544 5.7922 25 1 5.4205 -9.8636 7.1727 26 1 3.9204 -11.1638 5.7794 27 1 6.0363 -10.3863 4.8862 28 6 4.8081 -4.9260 4.5802 29 1 -0.3634 0.5449 0.8714 30 1 -0.3634 0.4821 -0.9076 31 1 -0.3633 -1.0271 0.0362 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5186 2.0542 -1.3087 35 1 1.9304 3.1291 -1.1678 36 1 2.0148 1.9995 -3.3327 37 1 3.3183 1.3614 -2.3024 38 1 1.8337 0.4113 -2.5500 39 1 0.5284 1.8561 1.4029 40 1 1.6665 3.1758 1.0403 41 1 2.1872 3.5678 3.4151 42 1 0.9845 2.3310 3.8534 43 1 2.6493 2.2129 4.4726 44 1 1.3562 -0.1382 2.5329 45 1 4.9375 -2.2920 3.9997 46 1 1.7297 -4.3559 3.6182 47 1 2.3064 -9.3150 4.9231 48 1 5.8390 -4.6939 4.8030 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746381600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:23 Heat of formation + Delta-G solvation = 6.606501 kcal Electronic energy + Delta-G solvation = -29543.102299 eV Core-core repulsion = 25441.916317 eV Total energy + Delta-G solvation = -4101.185982 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07459 -41.30854 -39.94509 -39.08477 -36.66117 -35.90666 -34.97190 -32.66911 -32.28323 -32.16129 -30.09460 -29.83437 -27.26736 -26.39152 -25.68113 -24.68505 -22.96216 -22.25518 -21.69260 -21.27137 -20.87534 -19.53227 -19.10683 -17.89415 -17.44168 -17.28805 -16.96943 -16.74804 -16.69331 -16.24486 -15.72777 -15.49299 -15.35186 -15.08058 -14.85645 -14.79094 -14.64893 -13.93468 -13.83008 -13.55318 -13.50652 -13.37711 -13.13357 -13.02019 -12.95185 -12.88342 -12.81867 -12.54723 -12.34513 -12.28843 -12.13234 -11.98172 -11.95049 -11.85398 -11.52159 -11.05091 -10.87026 -10.54862 -10.13970 -10.11100 -9.16553 -8.61781 -8.48601 -6.26276 0.31446 1.31001 1.33066 1.42723 1.57174 1.73562 2.06225 2.12677 2.54847 2.59394 2.91542 2.96093 3.07853 3.53778 3.85146 3.99433 4.05656 4.26778 4.30239 4.36162 4.39920 4.40850 4.50044 4.52676 4.62492 4.67044 4.70417 4.73750 4.87211 4.95832 4.97558 4.98662 5.06129 5.12814 5.16287 5.22147 5.25248 5.29164 5.30874 5.34902 5.43981 5.90409 6.01105 6.13437 6.18806 6.25464 6.49147 6.67776 6.83188 7.08384 7.41391 7.63167 8.50390 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002273 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.400600 B =12315.284684 C =12928.181649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.031 3.969 3 N -0.546 5.546 4 C 0.048 3.952 5 C -0.149 4.149 6 C 0.042 3.958 7 C 0.141 3.859 8 H 0.088 0.912 9 C -0.158 4.158 10 N -0.678 5.678 11 C 0.525 3.475 12 O -0.540 6.540 13 C 0.484 3.516 14 O -0.542 6.542 15 N -0.583 5.583 16 C -0.055 4.055 17 C -0.048 4.048 18 N -0.307 5.307 19 N -0.163 5.163 20 C -0.354 4.354 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.821 5.821 24 Si 1.019 2.981 25 H -0.253 1.253 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.076 4.076 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.061 0.939 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.414 0.586 45 H 0.422 0.578 46 H 0.176 0.824 47 H 0.278 0.722 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 21.830 -8.268 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.098 4.098 3 N -0.270 5.270 4 C -0.079 4.079 5 C -0.207 4.207 6 C -0.086 4.086 7 C 0.038 3.962 8 H 0.106 0.894 9 C -0.217 4.217 10 N -0.332 5.332 11 C 0.305 3.695 12 O -0.417 6.417 13 C 0.266 3.734 14 O -0.420 6.420 15 N -0.228 5.228 16 C -0.162 4.162 17 C -0.223 4.223 18 N -0.139 5.139 19 N 0.069 4.931 20 C -0.485 4.485 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.177 1.177 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.227 4.227 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.252 0.748 45 H 0.260 0.740 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.258 20.578 -8.181 22.259 hybrid contribution -0.386 -0.151 0.078 0.421 sum -2.643 20.427 -8.103 22.134 Atomic orbital electron populations 1.22368 0.97161 1.02640 1.02514 1.22460 0.93819 0.90613 1.02887 1.62234 1.60018 1.02120 1.02583 1.22180 0.98284 0.98373 0.89110 1.21789 1.01032 1.00485 0.97350 1.22576 0.97357 1.00098 0.88535 1.21348 1.02062 0.77634 0.95162 0.89393 1.22130 1.02165 1.00999 0.96377 1.46068 1.12998 1.10838 1.63343 1.19626 0.85194 0.86262 0.78439 1.90728 1.25129 1.73738 1.52127 1.20356 0.84640 0.88104 0.80288 1.90637 1.25273 1.73591 1.52548 1.42101 1.13773 1.06155 1.60757 1.17289 0.95218 0.84480 1.19164 1.24246 0.99144 0.91519 1.07433 1.78154 0.95477 1.17115 1.23166 1.44828 1.06002 1.06402 1.35846 1.20613 0.97759 0.84445 1.45658 0.84150 1.26880 0.95849 1.03725 0.95247 1.70368 1.08611 1.29425 1.36438 0.84650 0.77917 0.74041 0.79602 1.17739 1.20183 1.17790 1.21999 0.99855 0.85878 1.14990 0.91542 0.91617 0.92457 0.91440 0.91135 0.93824 0.89591 0.90931 0.92986 0.93561 0.92133 0.86978 0.88809 0.91295 0.93507 0.74767 0.74021 0.80713 0.91234 0.79596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.07 9.25 71.98 0.67 -2.40 16 2 C 0.03 0.60 5.34 86.30 0.46 1.06 16 3 N -0.55 -9.01 4.65 -896.20 -4.17 -13.18 16 4 C 0.05 0.61 5.40 86.31 0.47 1.08 16 5 C -0.15 -2.07 9.61 71.98 0.69 -1.37 16 6 C 0.04 0.54 4.63 86.30 0.40 0.94 16 7 C 0.14 2.44 2.96 44.99 0.13 2.57 16 8 H 0.09 1.89 7.29 -2.39 -0.02 1.87 16 9 C -0.16 -2.16 9.52 71.98 0.69 -1.47 16 10 N -0.68 -15.30 2.93 -444.00 -1.30 -16.60 16 11 C 0.52 15.53 7.67 87.23 0.67 16.20 16 12 O -0.54 -17.45 15.99 -3.29 -0.05 -17.50 16 13 C 0.48 17.41 7.85 87.23 0.69 18.09 16 14 O -0.54 -21.84 13.62 -3.41 -0.05 -21.89 16 15 N -0.58 -21.88 5.45 -305.33 -1.66 -23.54 16 16 C -0.06 -2.57 6.90 37.82 0.26 -2.31 16 17 C -0.05 -2.57 10.85 85.44 0.93 -1.64 16 18 N -0.31 -18.29 10.39 -56.43 -0.59 -18.87 16 19 N -0.16 -9.01 3.73 -189.98 -0.71 -9.72 16 20 C -0.35 -18.62 10.25 84.02 0.86 -17.76 16 21 H 0.14 6.41 7.83 -2.91 -0.02 6.38 16 22 C 0.00 -0.25 5.50 84.96 0.47 0.22 16 23 N -0.82 -46.79 11.81 21.67 0.26 -46.53 16 24 Si 1.02 38.21 29.55 68.60 2.03 40.24 16 25 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 26 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.25 -8.93 7.11 99.48 0.71 -8.22 16 28 C -0.08 -3.58 11.50 83.41 0.96 -2.62 16 29 H 0.07 0.95 6.01 -2.38 -0.01 0.93 16 30 H 0.06 0.94 6.50 -2.39 -0.02 0.92 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.44 6.38 -2.38 -0.02 1.42 16 33 H 0.07 1.68 4.63 -2.39 -0.01 1.67 16 34 H 0.04 0.51 6.26 -2.39 -0.01 0.49 16 35 H 0.09 0.88 7.89 -2.38 -0.02 0.86 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.72 6.72 -2.39 -0.02 0.70 16 39 H 0.06 0.69 5.60 -2.39 -0.01 0.68 16 40 H 0.11 0.95 7.74 -2.39 -0.02 0.93 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.41 8.99 6.85 -92.71 -0.64 8.35 16 45 H 0.42 13.51 8.29 -92.71 -0.77 12.74 16 46 H 0.18 9.14 5.92 -2.91 -0.02 9.12 16 47 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -71.77 385.79 1.70 -70.07 By element: Atomic # 1 Polarization: 47.33 SS G_CDS: -0.39 Total: 46.94 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 8.33 Total: 10.59 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -8.17 Total: -128.45 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.10 Total: -39.39 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 2.03 Total: 40.24 kcal Total: -71.77 1.70 -70.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746381600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.678 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds