Wall clock time and date at job start Tue Mar 31 2020 20:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47626 * 2 1 4 4 C 1.46900 * 111.00260 * 175.67592 * 3 2 1 5 5 C 1.52997 * 109.46925 * 293.94936 * 4 3 2 6 6 C 1.46899 * 110.99552 * 299.62911 * 3 2 1 7 7 C 1.53002 * 109.47336 * 292.05194 * 6 3 2 8 8 H 1.09004 * 109.46709 * 306.81048 * 7 6 3 9 9 C 1.52998 * 109.47276 * 186.81276 * 7 6 3 10 10 N 1.46493 * 109.47195 * 66.80844 * 7 6 3 11 11 C 1.34781 * 120.00109 * 214.72318 * 10 7 6 12 12 O 1.21364 * 119.99650 * 359.97438 * 11 10 7 13 13 C 1.49305 * 120.00069 * 180.02562 * 11 10 7 14 14 O 1.21405 * 120.00157 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00030 * 179.97438 * 13 11 10 16 16 C 1.40296 * 120.00110 * 179.97438 * 15 13 11 17 17 C 1.40724 * 126.09888 * 359.69442 * 16 15 13 18 18 N 1.30880 * 108.37430 * 179.85094 * 17 16 15 19 19 N 1.40063 * 108.43654 * 0.40688 * 18 17 16 20 20 C 1.37295 * 126.05636 * 179.74243 * 19 18 17 21 21 H 1.07999 * 119.99966 * 180.02562 * 20 19 18 22 22 C 1.39008 * 119.99775 * 359.97438 * 20 19 18 23 23 N 1.31282 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47411 * 89.99911 * 24 22 20 26 26 H 1.48498 * 109.47233 * 210.00030 * 24 22 20 27 27 H 1.48504 * 109.46821 * 330.00009 * 24 22 20 28 28 C 1.35792 * 126.09903 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47286 * 299.05576 * 1 2 3 30 30 H 1.09004 * 109.46959 * 59.05420 * 1 2 3 31 31 H 1.08996 * 109.47559 * 179.05172 * 1 2 3 32 32 H 1.08998 * 109.47239 * 239.99231 * 2 1 3 33 33 H 1.09002 * 109.47102 * 119.99662 * 2 1 3 34 34 H 1.08999 * 109.47098 * 53.95054 * 4 3 2 35 35 H 1.09003 * 109.47040 * 173.95136 * 4 3 2 36 36 H 1.08999 * 109.47329 * 299.99976 * 5 4 3 37 37 H 1.09003 * 109.47098 * 60.00236 * 5 4 3 38 38 H 1.09001 * 109.47212 * 179.97438 * 5 4 3 39 39 H 1.09005 * 109.47290 * 52.05241 * 6 3 2 40 40 H 1.09001 * 109.47352 * 172.04868 * 6 3 2 41 41 H 1.08994 * 109.46985 * 299.99594 * 9 7 6 42 42 H 1.09006 * 109.47121 * 59.99669 * 9 7 6 43 43 H 1.09002 * 109.47064 * 179.97438 * 9 7 6 44 44 H 0.97003 * 120.00324 * 34.72173 * 10 7 6 45 45 H 0.96999 * 120.00072 * 0.02562 * 15 13 11 46 46 H 1.07998 * 125.80952 * 359.97438 * 17 16 15 47 47 H 0.96994 * 119.99859 * 179.97438 * 23 22 20 48 48 H 1.08000 * 126.25330 * 359.95072 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4846 1.4254 0.1034 5 6 3.9144 0.8874 1.4697 6 6 1.5560 2.1072 -1.1921 7 6 2.2316 1.5258 -2.4357 8 1 3.3123 1.5206 -2.2931 9 6 1.8821 2.3830 -3.6539 10 7 1.7609 0.1555 -2.6516 11 6 2.5994 -0.7744 -3.1506 12 8 3.7442 -0.4762 -3.4215 13 6 2.1194 -2.1709 -3.3711 14 8 0.9738 -2.4688 -3.1014 15 7 2.9577 -3.1005 -3.8706 16 6 2.5069 -4.4129 -4.0773 17 6 1.2146 -4.8984 -3.8040 18 7 1.1726 -6.1655 -4.1293 19 7 2.4327 -6.5408 -4.6122 20 6 2.7906 -7.7921 -5.0494 21 1 3.7947 -7.9738 -5.4030 22 6 1.8608 -8.8254 -5.0359 23 7 0.6406 -8.6049 -4.6046 24 14 2.3480 -10.5281 -5.6300 25 1 2.8737 -11.3191 -4.4885 26 1 1.1598 -11.2120 -6.2007 27 1 3.3979 -10.4066 -6.6733 28 6 3.2415 -5.4428 -4.5709 29 1 -0.3634 0.4991 0.8983 30 1 -0.3633 0.5285 -0.8814 31 1 -0.3634 -1.0275 -0.0170 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9214 0.8101 -0.6832 35 1 3.8283 2.4539 -0.0066 36 1 3.4775 1.5026 2.2562 37 1 3.5706 -0.1411 1.5797 38 1 5.0013 0.9169 1.5463 39 1 0.4749 2.0018 -1.2832 40 1 1.8116 3.1628 -1.0998 41 1 0.8016 2.3883 -3.7964 42 1 2.2324 3.4027 -3.4932 43 1 2.3638 1.9690 -4.5397 44 1 0.8458 -0.0828 -2.4354 45 1 3.8729 -2.8625 -4.0864 46 1 0.3963 -4.3229 -3.3972 47 1 -0.0082 -9.3258 -4.5955 48 1 4.2767 -5.4003 -4.8757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746381602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:30 Heat of formation + Delta-G solvation = 31.625939 kcal Electronic energy + Delta-G solvation = -29948.056711 eV Core-core repulsion = 25847.955653 eV Total energy + Delta-G solvation = -4100.101058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.92090 -39.82750 -38.81453 -37.76627 -35.30414 -34.30201 -33.21106 -32.17173 -31.66004 -30.34954 -29.19798 -28.08178 -25.83808 -25.47941 -24.22545 -23.20059 -22.13216 -21.06882 -20.44323 -20.13637 -19.49240 -18.12183 -17.51180 -16.74376 -16.38738 -15.90742 -15.58859 -15.48728 -15.24980 -15.13506 -14.75214 -14.24472 -14.03165 -13.84068 -13.65492 -13.60012 -13.20103 -13.01757 -12.84851 -12.52908 -12.35213 -12.27647 -12.02141 -11.77048 -11.67688 -11.66369 -11.56539 -11.48095 -11.31186 -11.27150 -11.10824 -10.88137 -10.75063 -10.57445 -10.32831 -9.50911 -9.25656 -9.18663 -8.90592 -8.23767 -8.15760 -6.81295 -6.62893 -4.30347 1.58233 2.52036 2.91190 3.02196 3.07123 3.27483 3.66052 3.69828 3.73209 3.91773 4.33727 4.38683 4.56662 4.72755 4.75768 4.90774 4.95592 4.95792 5.00039 5.04958 5.16992 5.30565 5.31735 5.37210 5.47718 5.49248 5.57694 5.68210 5.75619 5.86337 5.90047 5.90968 6.02856 6.11749 6.16756 6.19102 6.32475 6.71439 6.83409 6.85165 6.85996 6.87289 7.12978 7.14114 7.71196 7.80931 8.04868 8.15175 8.44257 8.66095 9.28325 9.56941 10.32852 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.002363 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.938337 B =11848.276510 C =12055.181131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.021 3.979 3 N -0.531 5.531 4 C 0.044 3.956 5 C -0.148 4.148 6 C 0.041 3.959 7 C 0.096 3.904 8 H 0.100 0.900 9 C -0.162 4.162 10 N -0.696 5.696 11 C 0.512 3.488 12 O -0.527 6.527 13 C 0.481 3.519 14 O -0.521 6.521 15 N -0.582 5.582 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.260 5.260 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.046 3.954 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.078 4.078 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.414 0.586 45 H 0.409 0.591 46 H 0.178 0.822 47 H 0.276 0.724 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 19.179 6.519 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 N -0.254 5.254 4 C -0.084 4.084 5 C -0.206 4.206 6 C -0.088 4.088 7 C -0.010 4.010 8 H 0.118 0.882 9 C -0.220 4.220 10 N -0.352 5.352 11 C 0.294 3.706 12 O -0.403 6.403 13 C 0.262 3.738 14 O -0.399 6.399 15 N -0.225 5.225 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.091 5.091 19 N 0.096 4.904 20 C -0.454 4.454 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.760 3.240 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.187 1.187 28 C -0.229 4.229 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.252 0.748 45 H 0.243 0.757 46 H 0.194 0.806 47 H 0.087 0.913 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.036 18.240 6.926 19.617 hybrid contribution 1.194 -0.332 -1.022 1.606 sum 3.229 17.909 5.904 19.131 Atomic orbital electron populations 1.21851 0.94811 1.02352 1.01854 1.22605 0.96190 0.89192 1.02645 1.62356 1.10396 1.15213 1.37435 1.22133 0.87518 1.01096 0.97651 1.21789 1.00608 1.01394 0.96814 1.22676 1.00909 0.98760 0.86486 1.21952 1.01750 0.80862 0.96415 0.88185 1.22137 1.02246 0.99678 0.97988 1.46140 1.16046 1.09530 1.63459 1.20360 0.85695 0.86766 0.77761 1.90726 1.18273 1.81632 1.49695 1.19641 0.86407 0.85608 0.82164 1.90658 1.17895 1.80223 1.51099 1.42144 1.14179 1.07596 1.58538 1.17250 0.96252 0.83673 1.20420 1.24141 0.96294 0.93445 1.06279 1.78268 0.99533 1.11134 1.20161 1.44570 1.05947 1.06063 1.33852 1.19929 0.99389 0.82639 1.43442 0.86430 1.25669 0.94803 1.00785 0.95876 1.70203 1.02674 1.33060 1.33377 0.85802 0.78817 0.80107 0.79305 1.19510 1.20020 1.18734 1.21304 0.97599 0.87923 1.16097 0.92008 0.92921 0.91529 0.92382 0.90758 0.94203 0.90858 0.91983 0.92582 0.92363 0.89450 0.89018 0.92036 0.91269 0.91974 0.74784 0.75655 0.80567 0.91329 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.16 37.16 0.34 -1.10 16 2 C 0.02 0.22 4.93 -3.83 -0.02 0.21 16 3 N -0.53 -4.89 4.76 -234.63 -1.12 -6.00 16 4 C 0.04 0.40 4.84 -3.83 -0.02 0.38 16 5 C -0.15 -1.29 9.84 37.16 0.37 -0.92 16 6 C 0.04 0.31 4.89 -3.82 -0.02 0.29 16 7 C 0.10 0.89 2.41 -67.93 -0.16 0.72 16 8 H 0.10 1.07 5.34 -51.93 -0.28 0.80 16 9 C -0.16 -1.30 9.52 37.16 0.35 -0.94 16 10 N -0.70 -8.05 2.66 -54.29 -0.14 -8.19 16 11 C 0.51 7.59 7.08 -11.65 -0.08 7.50 16 12 O -0.53 -8.48 15.98 5.48 0.09 -8.40 16 13 C 0.48 8.56 7.85 -11.66 -0.09 8.47 16 14 O -0.52 -10.27 13.62 5.45 0.07 -10.19 16 15 N -0.58 -10.89 5.45 -10.45 -0.06 -10.95 16 16 C -0.07 -1.60 6.90 -83.92 -0.58 -2.18 16 17 C -0.03 -0.66 10.85 -17.02 -0.18 -0.85 16 18 N -0.26 -7.41 10.39 30.81 0.32 -7.09 16 19 N -0.14 -3.72 3.73 -11.40 -0.04 -3.76 16 20 C -0.32 -8.36 10.25 -14.82 -0.15 -8.52 16 21 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 22 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 23 N -0.77 -21.01 11.81 55.50 0.66 -20.35 16 24 Si 0.94 18.58 29.55 -169.99 -5.02 13.56 16 25 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.45 5.31 -51.93 -0.28 0.17 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.71 4.34 -51.93 -0.23 0.49 16 33 H 0.07 0.81 6.28 -51.93 -0.33 0.49 16 34 H 0.04 0.44 6.68 -51.93 -0.35 0.09 16 35 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.53 6.47 -51.93 -0.34 0.20 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.63 5.91 -51.93 -0.31 0.33 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.41 4.66 5.96 -40.82 -0.24 4.42 16 45 H 0.41 6.64 8.29 -40.82 -0.34 6.30 16 46 H 0.18 4.38 5.92 -52.49 -0.31 4.07 16 47 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -31.43 382.67 -6.77 -38.19 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: -6.76 Total: 15.26 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -0.53 Total: 2.15 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.38 Total: -56.34 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.16 Total: -18.59 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.43 -6.77 -38.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746381602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.820 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds