Wall clock time and date at job start Tue Mar 31 2020 20:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47626 * 2 1 4 4 C 1.46900 * 111.00260 * 175.67592 * 3 2 1 5 5 C 1.52997 * 109.46925 * 293.94936 * 4 3 2 6 6 C 1.46899 * 110.99552 * 299.62911 * 3 2 1 7 7 C 1.53002 * 109.47336 * 292.05194 * 6 3 2 8 8 H 1.09004 * 109.46709 * 306.81048 * 7 6 3 9 9 C 1.52998 * 109.47276 * 186.81276 * 7 6 3 10 10 N 1.46493 * 109.47195 * 66.80844 * 7 6 3 11 11 C 1.34781 * 120.00109 * 214.72318 * 10 7 6 12 12 O 1.21364 * 119.99650 * 359.97438 * 11 10 7 13 13 C 1.49305 * 120.00069 * 180.02562 * 11 10 7 14 14 O 1.21405 * 120.00157 * 0.02562 * 13 11 10 15 15 N 1.34771 * 120.00030 * 179.97438 * 13 11 10 16 16 C 1.40296 * 120.00110 * 179.97438 * 15 13 11 17 17 C 1.40724 * 126.09888 * 359.69442 * 16 15 13 18 18 N 1.30880 * 108.37430 * 179.85094 * 17 16 15 19 19 N 1.40063 * 108.43654 * 0.40688 * 18 17 16 20 20 C 1.37295 * 126.05636 * 179.74243 * 19 18 17 21 21 H 1.07999 * 119.99966 * 180.02562 * 20 19 18 22 22 C 1.39008 * 119.99775 * 359.97438 * 20 19 18 23 23 N 1.31282 * 120.00205 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99872 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47411 * 89.99911 * 24 22 20 26 26 H 1.48498 * 109.47233 * 210.00030 * 24 22 20 27 27 H 1.48504 * 109.46821 * 330.00009 * 24 22 20 28 28 C 1.35792 * 126.09903 * 180.02562 * 16 15 13 29 29 H 1.08997 * 109.47286 * 299.05576 * 1 2 3 30 30 H 1.09004 * 109.46959 * 59.05420 * 1 2 3 31 31 H 1.08996 * 109.47559 * 179.05172 * 1 2 3 32 32 H 1.08998 * 109.47239 * 239.99231 * 2 1 3 33 33 H 1.09002 * 109.47102 * 119.99662 * 2 1 3 34 34 H 1.08999 * 109.47098 * 53.95054 * 4 3 2 35 35 H 1.09003 * 109.47040 * 173.95136 * 4 3 2 36 36 H 1.08999 * 109.47329 * 299.99976 * 5 4 3 37 37 H 1.09003 * 109.47098 * 60.00236 * 5 4 3 38 38 H 1.09001 * 109.47212 * 179.97438 * 5 4 3 39 39 H 1.09005 * 109.47290 * 52.05241 * 6 3 2 40 40 H 1.09001 * 109.47352 * 172.04868 * 6 3 2 41 41 H 1.08994 * 109.46985 * 299.99594 * 9 7 6 42 42 H 1.09006 * 109.47121 * 59.99669 * 9 7 6 43 43 H 1.09002 * 109.47064 * 179.97438 * 9 7 6 44 44 H 0.97003 * 120.00324 * 34.72173 * 10 7 6 45 45 H 0.96999 * 120.00072 * 0.02562 * 15 13 11 46 46 H 1.07998 * 125.80952 * 359.97438 * 17 16 15 47 47 H 0.96994 * 119.99859 * 179.97438 * 23 22 20 48 48 H 1.08000 * 126.25330 * 359.95072 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 3.4846 1.4254 0.1034 5 6 3.9144 0.8874 1.4697 6 6 1.5560 2.1072 -1.1921 7 6 2.2316 1.5258 -2.4357 8 1 3.3123 1.5206 -2.2931 9 6 1.8821 2.3830 -3.6539 10 7 1.7609 0.1555 -2.6516 11 6 2.5994 -0.7744 -3.1506 12 8 3.7442 -0.4762 -3.4215 13 6 2.1194 -2.1709 -3.3711 14 8 0.9738 -2.4688 -3.1014 15 7 2.9577 -3.1005 -3.8706 16 6 2.5069 -4.4129 -4.0773 17 6 1.2146 -4.8984 -3.8040 18 7 1.1726 -6.1655 -4.1293 19 7 2.4327 -6.5408 -4.6122 20 6 2.7906 -7.7921 -5.0494 21 1 3.7947 -7.9738 -5.4030 22 6 1.8608 -8.8254 -5.0359 23 7 0.6406 -8.6049 -4.6046 24 14 2.3480 -10.5281 -5.6300 25 1 2.8737 -11.3191 -4.4885 26 1 1.1598 -11.2120 -6.2007 27 1 3.3979 -10.4066 -6.6733 28 6 3.2415 -5.4428 -4.5709 29 1 -0.3634 0.4991 0.8983 30 1 -0.3633 0.5285 -0.8814 31 1 -0.3634 -1.0275 -0.0170 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9214 0.8101 -0.6832 35 1 3.8283 2.4539 -0.0066 36 1 3.4775 1.5026 2.2562 37 1 3.5706 -0.1411 1.5797 38 1 5.0013 0.9169 1.5463 39 1 0.4749 2.0018 -1.2832 40 1 1.8116 3.1628 -1.0998 41 1 0.8016 2.3883 -3.7964 42 1 2.2324 3.4027 -3.4932 43 1 2.3638 1.9690 -4.5397 44 1 0.8458 -0.0828 -2.4354 45 1 3.8729 -2.8625 -4.0864 46 1 0.3963 -4.3229 -3.3972 47 1 -0.0082 -9.3258 -4.5955 48 1 4.2767 -5.4003 -4.8757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746381602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:29 Heat of formation + Delta-G solvation = 8.951765 kcal Electronic energy + Delta-G solvation = -29949.039937 eV Core-core repulsion = 25847.955653 eV Total energy + Delta-G solvation = -4101.084284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.20737 -41.45959 -40.09022 -39.02539 -36.45140 -35.79190 -34.98409 -32.98892 -32.52436 -32.30188 -30.01095 -29.82206 -27.30021 -26.45826 -25.69384 -23.95677 -23.19545 -22.80430 -21.78648 -21.29262 -20.98822 -19.57103 -19.16852 -17.87430 -17.46502 -17.32004 -16.95903 -16.82904 -16.50647 -16.26436 -15.87469 -15.61513 -15.39137 -15.09403 -14.89118 -14.87367 -14.70477 -14.30861 -13.74926 -13.52748 -13.40552 -13.24329 -13.08521 -13.02030 -12.96380 -12.92087 -12.69318 -12.57452 -12.40505 -12.28698 -12.25110 -12.09598 -11.99124 -11.82041 -11.54394 -11.08378 -10.89235 -10.61882 -10.44788 -10.15770 -9.05730 -8.64578 -8.50199 -6.28070 0.23275 1.25837 1.28039 1.41183 1.57881 1.70603 2.00593 2.10681 2.50386 2.53958 2.89152 2.96502 3.06318 3.46551 3.68478 3.99884 4.06250 4.17609 4.21380 4.28660 4.37289 4.44304 4.49995 4.56786 4.61957 4.66793 4.70317 4.83759 4.87863 4.93145 4.94693 4.96372 5.03861 5.09886 5.13129 5.18613 5.21254 5.27494 5.28636 5.30782 5.37648 5.86976 5.94522 6.07640 6.12172 6.22074 6.43329 6.64721 6.74792 7.02911 7.39338 7.61010 8.48939 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021144 B = 0.002363 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.938337 B =11848.276510 C =12055.181131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.023 3.977 3 N -0.529 5.529 4 C 0.045 3.955 5 C -0.146 4.146 6 C 0.043 3.957 7 C 0.095 3.905 8 H 0.089 0.911 9 C -0.157 4.157 10 N -0.679 5.679 11 C 0.521 3.479 12 O -0.540 6.540 13 C 0.483 3.517 14 O -0.539 6.539 15 N -0.582 5.582 16 C -0.057 4.057 17 C -0.047 4.047 18 N -0.307 5.307 19 N -0.162 5.162 20 C -0.353 4.353 21 H 0.141 0.859 22 C -0.005 4.005 23 N -0.820 5.820 24 Si 1.019 2.981 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.245 1.245 28 C -0.076 4.076 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.019 0.981 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.097 0.903 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.416 0.584 45 H 0.422 0.578 46 H 0.176 0.824 47 H 0.278 0.722 48 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 20.997 6.401 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 N -0.252 5.252 4 C -0.083 4.083 5 C -0.204 4.204 6 C -0.085 4.085 7 C -0.010 4.010 8 H 0.107 0.893 9 C -0.216 4.216 10 N -0.333 5.333 11 C 0.302 3.698 12 O -0.417 6.417 13 C 0.264 3.736 14 O -0.417 6.417 15 N -0.227 5.227 16 C -0.163 4.163 17 C -0.222 4.222 18 N -0.138 5.138 19 N 0.070 4.930 20 C -0.484 4.484 21 H 0.159 0.841 22 C -0.217 4.217 23 N -0.447 5.447 24 Si 0.838 3.162 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.168 1.168 28 C -0.227 4.227 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.136 0.864 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.061 0.939 44 H 0.255 0.745 45 H 0.259 0.741 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.267 20.127 6.821 21.501 hybrid contribution 0.814 -0.663 -0.899 1.382 sum 4.081 19.464 5.922 20.750 Atomic orbital electron populations 1.21808 0.94037 1.01801 1.02786 1.22522 0.96798 0.89900 1.01249 1.62378 1.10439 1.14193 1.38172 1.22157 0.87332 1.01735 0.97066 1.21768 1.01170 1.00585 0.96842 1.22810 1.01246 0.99668 0.84773 1.22185 1.01297 0.79406 0.98064 0.89305 1.22112 1.02785 1.00495 0.96178 1.46192 1.15609 1.10042 1.61483 1.19697 0.85831 0.85715 0.78581 1.90728 1.18677 1.81421 1.50889 1.20307 0.85919 0.86780 0.80556 1.90647 1.18877 1.80932 1.51292 1.42087 1.15087 1.06262 1.59273 1.17288 0.95088 0.85333 1.18601 1.24244 0.97633 0.93231 1.07135 1.78162 1.01403 1.12505 1.21776 1.44844 1.05970 1.07262 1.34967 1.20655 1.00779 0.82859 1.44141 0.84133 1.26879 0.94349 1.05195 0.95255 1.70370 1.04273 1.34644 1.35460 0.84588 0.78658 0.73876 0.79079 1.18867 1.20075 1.16819 1.21992 0.98931 0.87018 1.14758 0.91224 0.91770 0.92876 0.94397 0.91666 0.96250 0.89024 0.91441 0.93999 0.91571 0.88498 0.86416 0.91057 0.88733 0.93939 0.74484 0.74075 0.80713 0.91211 0.79619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.16 71.98 0.66 -1.98 16 2 C 0.02 0.47 4.93 86.30 0.43 0.90 16 3 N -0.53 -8.70 4.76 -896.23 -4.26 -12.97 16 4 C 0.04 0.75 4.84 86.30 0.42 1.16 16 5 C -0.15 -2.37 9.84 71.98 0.71 -1.66 16 6 C 0.04 0.54 4.89 86.30 0.42 0.96 16 7 C 0.10 1.56 2.41 44.99 0.11 1.67 16 8 H 0.09 1.75 5.34 -2.38 -0.01 1.73 16 9 C -0.16 -2.10 9.52 71.98 0.68 -1.41 16 10 N -0.68 -14.92 2.66 -444.01 -1.18 -16.10 16 11 C 0.52 15.10 7.08 87.22 0.62 15.72 16 12 O -0.54 -16.89 15.98 -3.29 -0.05 -16.95 16 13 C 0.48 17.16 7.85 87.23 0.69 17.85 16 14 O -0.54 -21.55 13.62 -3.42 -0.05 -21.60 16 15 N -0.58 -21.62 5.45 -305.33 -1.66 -23.28 16 16 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 17 C -0.05 -2.50 10.85 85.44 0.93 -1.57 16 18 N -0.31 -18.15 10.39 -56.43 -0.59 -18.74 16 19 N -0.16 -8.94 3.73 -189.97 -0.71 -9.65 16 20 C -0.35 -18.50 10.25 84.02 0.86 -17.64 16 21 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 22 C 0.00 -0.23 5.50 84.96 0.47 0.24 16 23 N -0.82 -46.50 11.81 21.66 0.26 -46.25 16 24 Si 1.02 38.02 29.55 68.60 2.03 40.05 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 26 H -0.28 -10.17 7.11 99.48 0.71 -9.47 16 27 H -0.25 -8.33 7.11 99.48 0.71 -7.62 16 28 C -0.08 -3.54 11.50 83.41 0.96 -2.58 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 0.98 5.31 -2.38 -0.01 0.97 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.04 0.92 4.34 -2.39 -0.01 0.91 16 33 H 0.06 1.43 6.28 -2.39 -0.01 1.42 16 34 H 0.02 0.41 6.68 -2.39 -0.02 0.39 16 35 H 0.09 1.19 8.08 -2.39 -0.02 1.18 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.04 0.79 6.47 -2.39 -0.02 0.77 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.08 5.91 -2.38 -0.01 1.06 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.42 8.92 5.96 -92.71 -0.55 8.37 16 45 H 0.42 13.31 8.29 -92.71 -0.77 12.54 16 46 H 0.18 9.09 5.92 -2.91 -0.02 9.07 16 47 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.19 6.95 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -70.93 382.67 1.68 -69.25 By element: Atomic # 1 Polarization: 47.25 SS G_CDS: -0.31 Total: 46.95 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 8.20 Total: 9.28 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -8.15 Total: -126.99 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -0.10 Total: -38.54 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -70.93 1.68 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746381602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.206 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds