Wall clock time and date at job start Tue Mar 31 2020 20:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47197 * 2 1 4 4 C 1.46497 * 120.00217 * 270.00494 * 3 2 1 5 5 C 1.53003 * 109.46681 * 269.99807 * 4 3 2 6 6 C 1.34776 * 119.99769 * 90.00221 * 3 2 1 7 7 O 1.21287 * 120.00123 * 359.97438 * 6 3 2 8 8 C 1.50694 * 120.00262 * 180.02562 * 6 3 2 9 9 N 1.46499 * 109.47550 * 179.97438 * 8 6 3 10 10 C 1.34777 * 120.00195 * 179.97438 * 9 8 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99726 * 180.27548 * 10 9 8 13 13 C 1.40196 * 119.99786 * 179.72659 * 12 10 9 14 14 C 1.40403 * 125.97362 * 359.72037 * 13 12 10 15 15 C 1.35241 * 107.87032 * 179.83093 * 14 13 12 16 16 C 1.50704 * 126.07402 * 180.16205 * 15 14 13 17 17 N 1.34964 * 107.85500 * 0.42559 * 15 14 13 18 18 C 1.46503 * 125.97580 * 179.71183 * 17 15 14 19 19 C 1.50699 * 109.47232 * 270.00070 * 18 17 15 20 20 H 1.08004 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00303 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99889 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47364 * 60.00352 * 23 21 19 25 25 H 1.48502 * 109.46795 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47383 * 299.99889 * 23 21 19 27 27 N 1.31207 * 125.97268 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46783 * 299.99792 * 1 2 3 30 30 H 1.08998 * 109.47135 * 59.99623 * 1 2 3 31 31 H 1.09003 * 109.46783 * 240.00207 * 2 1 3 32 32 H 1.08998 * 109.47135 * 120.00377 * 2 1 3 33 33 H 1.08999 * 109.47216 * 29.99699 * 4 3 2 34 34 H 1.09007 * 109.47258 * 150.00093 * 4 3 2 35 35 H 1.08999 * 109.47208 * 299.99897 * 5 4 3 36 36 H 1.08994 * 109.47415 * 60.00182 * 5 4 3 37 37 H 1.09008 * 109.47004 * 180.02562 * 5 4 3 38 38 H 1.08998 * 109.47333 * 59.99721 * 8 6 3 39 39 H 1.09002 * 109.47271 * 300.00155 * 8 6 3 40 40 H 0.97000 * 120.00069 * 0.02562 * 9 8 6 41 41 H 0.97000 * 120.00483 * 359.73178 * 12 10 9 42 42 H 1.08001 * 126.06561 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46414 * 270.31468 * 16 15 14 44 44 H 1.08994 * 109.47042 * 30.31368 * 16 15 14 45 45 H 1.08993 * 109.47184 * 150.31712 * 16 15 14 46 46 H 1.09001 * 109.47222 * 29.99739 * 18 17 15 47 47 H 1.08997 * 109.47398 * 150.00005 * 18 17 15 48 48 H 0.97000 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7103 6 6 2.2431 2.0165 1.1672 7 8 2.0405 1.4448 2.2176 8 6 2.7448 3.4374 1.1674 9 7 2.9072 3.8980 2.5486 10 6 3.3489 5.1472 2.7949 11 8 3.6121 5.8923 1.8707 12 7 3.5035 5.5690 4.0656 13 6 3.9684 6.8665 4.3219 14 6 4.3141 7.8246 3.3555 15 6 4.7100 8.9436 4.0036 16 6 5.1668 10.2274 3.3597 17 7 4.6291 8.7045 5.3294 18 6 4.9708 9.6483 6.3965 19 6 6.4256 9.4932 6.7577 20 1 7.0349 8.7646 6.2435 21 6 6.9790 10.2819 7.7439 22 7 6.2374 11.1700 8.3691 23 14 8.7822 10.0890 8.1920 24 1 9.6213 10.3656 6.9985 25 1 9.1285 11.0457 9.2737 26 1 9.0301 8.7019 8.6607 27 7 4.1618 7.3960 5.5067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1412 -1.1383 35 1 4.3883 2.2155 -0.9507 36 1 3.8745 0.7623 -1.8408 37 1 3.8893 2.3457 -2.6541 38 1 2.0266 4.0765 0.6538 39 1 3.7049 3.4838 0.6533 40 1 2.6975 3.3035 3.2858 41 1 3.2932 4.9747 4.8029 42 1 4.2693 7.6923 2.2845 43 1 6.2445 10.1908 3.2011 44 1 4.6625 10.3527 2.4016 45 1 4.9236 11.0670 4.0108 46 1 4.7883 10.6666 6.0531 47 1 4.3552 9.4446 7.2727 48 1 6.6267 11.7247 9.0631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777616516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:44 Heat of formation + Delta-G solvation = 15.931189 kcal Electronic energy + Delta-G solvation = -28556.816404 eV Core-core repulsion = 24456.034770 eV Total energy + Delta-G solvation = -4100.781633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.90977 -40.48143 -39.40146 -36.78356 -35.03884 -34.51255 -33.33679 -32.66249 -31.39690 -30.79127 -30.17703 -28.00379 -26.47753 -26.24678 -24.12223 -23.64420 -22.90441 -21.50082 -20.18029 -19.60124 -19.37810 -18.12376 -17.27782 -16.82157 -16.65313 -16.38603 -16.06176 -15.51864 -15.23699 -14.73275 -14.61374 -14.45863 -14.32436 -14.12440 -14.08190 -13.69089 -13.43909 -13.10828 -12.96855 -12.79435 -12.52695 -12.44362 -12.24971 -12.18050 -12.12336 -11.68101 -11.63118 -11.48262 -11.36358 -11.08510 -10.78887 -10.43950 -10.32400 -10.22678 -10.01784 -9.65034 -9.53330 -9.34448 -9.23802 -8.61089 -7.87994 -7.37348 -6.22406 -4.29843 2.09903 2.11664 2.63443 2.67186 3.10757 3.25517 3.29155 3.33520 3.63086 3.85867 3.92290 4.28296 4.34588 4.38977 4.58015 4.59572 4.80094 4.83340 4.93920 5.00643 5.05058 5.11181 5.12971 5.27596 5.33733 5.44667 5.46034 5.67327 5.73246 5.74450 5.93887 6.00372 6.13415 6.14702 6.24602 6.48954 6.60656 6.65180 6.79947 6.97678 7.08957 7.17207 7.55000 7.61182 7.70232 7.92246 7.96418 8.10722 8.57514 8.70933 8.79099 9.36164 10.84734 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.001889 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.556610 B =14818.798953 C =15036.036890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.610 5.610 4 C 0.099 3.901 5 C -0.175 4.175 6 C 0.511 3.489 7 O -0.533 6.533 8 C 0.123 3.877 9 N -0.736 5.736 10 C 0.718 3.282 11 O -0.568 6.568 12 N -0.641 5.641 13 C 0.282 3.718 14 C -0.289 4.289 15 C 0.090 3.910 16 C -0.083 4.083 17 N -0.318 5.318 18 C 0.259 3.741 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.275 1.275 27 N -0.323 5.323 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.408 0.592 41 H 0.408 0.592 42 H 0.161 0.839 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.794 -18.849 -21.406 30.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.011 4.011 3 N -0.344 5.344 4 C -0.024 4.024 5 C -0.233 4.233 6 C 0.299 3.701 7 O -0.410 6.410 8 C -0.005 4.005 9 N -0.396 5.396 10 C 0.417 3.583 11 O -0.444 6.444 12 N -0.291 5.291 13 C 0.029 3.971 14 C -0.320 4.320 15 C -0.041 4.041 16 C -0.141 4.141 17 N -0.100 5.100 18 C 0.141 3.859 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.200 1.200 27 N -0.153 5.153 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.245 0.755 41 H 0.243 0.757 42 H 0.178 0.822 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.711 -18.453 -20.200 29.032 hybrid contribution 0.808 -0.635 0.207 1.048 sum -8.902 -19.088 -19.993 29.040 Atomic orbital electron populations 1.22133 0.95647 1.02398 1.02466 1.21454 0.94529 0.81800 1.03353 1.47972 1.65931 1.14579 1.05936 1.21713 0.97409 0.98121 0.85188 1.22236 0.96253 1.02549 1.02247 1.20605 0.77315 0.88478 0.83691 1.90709 1.51832 1.67582 1.30876 1.20924 1.03270 0.91764 0.84502 1.44648 1.72731 1.13978 1.08231 1.15456 0.78483 0.81590 0.82792 1.90870 1.56245 1.54275 1.42968 1.41316 1.68262 1.12651 1.06861 1.18643 1.00425 0.85214 0.92819 1.21222 1.17711 0.92336 1.00756 1.21058 1.00389 0.97661 0.84997 1.20323 1.01750 0.92364 0.99708 1.48965 1.46767 1.08677 1.05632 1.19671 0.97058 0.85271 0.83875 1.21289 0.94029 1.21291 1.20761 0.91816 1.24924 0.98848 0.94658 0.95374 1.69911 1.36388 1.22173 1.24542 0.86412 0.83903 0.78160 0.78185 1.19949 1.20988 1.20014 1.77264 1.25277 0.94125 1.18663 0.91467 0.92089 0.92519 0.90375 0.89693 0.89799 0.89626 0.92010 0.92199 0.90919 0.88316 0.88249 0.75468 0.75710 0.82203 0.90471 0.90847 0.90906 0.92801 0.93036 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.11 0.62 6.13 -4.04 -0.02 0.60 16 3 N -0.61 -3.89 2.47 -173.68 -0.43 -4.32 16 4 C 0.10 0.38 5.93 -4.04 -0.02 0.36 16 5 C -0.17 -0.67 10.24 37.16 0.38 -0.29 16 6 C 0.51 4.66 7.74 -10.99 -0.09 4.57 16 7 O -0.53 -6.52 15.25 5.55 0.08 -6.43 16 8 C 0.12 1.12 4.71 -5.20 -0.02 1.10 16 9 N -0.74 -8.48 5.53 -66.42 -0.37 -8.85 16 10 C 0.72 10.96 8.53 -86.92 -0.74 10.22 16 11 O -0.57 -10.13 13.47 5.28 0.07 -10.06 16 12 N -0.64 -10.52 5.46 -15.51 -0.08 -10.60 16 13 C 0.28 5.91 8.11 -154.36 -1.25 4.65 16 14 C -0.29 -6.05 9.52 -39.83 -0.38 -6.43 16 15 C 0.09 1.93 6.93 -82.28 -0.57 1.36 16 16 C -0.08 -1.44 10.11 36.01 0.36 -1.07 16 17 N -0.32 -7.67 3.59 -58.32 -0.21 -7.88 16 18 C 0.26 6.73 5.99 -5.19 -0.03 6.69 16 19 C -0.54 -14.90 9.39 -34.44 -0.32 -15.23 16 20 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -25.25 13.29 55.43 0.74 -24.52 16 23 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 27 N -0.32 -7.62 12.59 31.44 0.40 -7.22 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.27 8.07 -51.93 -0.42 -0.14 16 32 H 0.08 0.61 7.42 -51.93 -0.39 0.23 16 33 H 0.08 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.09 0.30 6.44 -51.93 -0.33 -0.03 16 35 H 0.06 0.32 7.22 -51.93 -0.38 -0.06 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.21 8.14 -51.92 -0.42 -0.21 16 38 H 0.10 0.81 7.40 -51.93 -0.38 0.42 16 39 H 0.10 0.84 7.19 -51.93 -0.37 0.47 16 40 H 0.41 4.38 7.45 -40.82 -0.30 4.07 16 41 H 0.41 5.57 8.84 -40.82 -0.36 5.21 16 42 H 0.16 3.24 5.91 -52.49 -0.31 2.93 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.07 1.26 7.07 -51.93 -0.37 0.90 16 46 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 47 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -34.60 400.90 -8.53 -43.14 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.33 Total: 6.67 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -2.43 Total: 7.73 kcal Atomic # 7 Polarization: -63.42 SS G_CDS: 0.04 Total: -63.38 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.16 Total: -16.49 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.60 -8.53 -43.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777616516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.071 kcal (2) G-P(sol) polarization free energy of solvation -34.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds