Wall clock time and date at job start Tue Mar 31 2020 20:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47197 * 2 1 4 4 C 1.46497 * 120.00217 * 270.00494 * 3 2 1 5 5 C 1.53003 * 109.46681 * 269.99807 * 4 3 2 6 6 C 1.34776 * 119.99769 * 90.00221 * 3 2 1 7 7 O 1.21287 * 120.00123 * 359.97438 * 6 3 2 8 8 C 1.50694 * 120.00262 * 180.02562 * 6 3 2 9 9 N 1.46499 * 109.47550 * 179.97438 * 8 6 3 10 10 C 1.34777 * 120.00195 * 179.97438 * 9 8 6 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99726 * 180.27548 * 10 9 8 13 13 C 1.40196 * 119.99786 * 179.72659 * 12 10 9 14 14 C 1.40403 * 125.97362 * 359.72037 * 13 12 10 15 15 C 1.35241 * 107.87032 * 179.83093 * 14 13 12 16 16 C 1.50704 * 126.07402 * 180.16205 * 15 14 13 17 17 N 1.34964 * 107.85500 * 0.42559 * 15 14 13 18 18 C 1.46503 * 125.97580 * 179.71183 * 17 15 14 19 19 C 1.50699 * 109.47232 * 270.00070 * 18 17 15 20 20 H 1.08004 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00303 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99755 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99889 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47364 * 60.00352 * 23 21 19 25 25 H 1.48502 * 109.46795 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47383 * 299.99889 * 23 21 19 27 27 N 1.31207 * 125.97268 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.46904 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46783 * 299.99792 * 1 2 3 30 30 H 1.08998 * 109.47135 * 59.99623 * 1 2 3 31 31 H 1.09003 * 109.46783 * 240.00207 * 2 1 3 32 32 H 1.08998 * 109.47135 * 120.00377 * 2 1 3 33 33 H 1.08999 * 109.47216 * 29.99699 * 4 3 2 34 34 H 1.09007 * 109.47258 * 150.00093 * 4 3 2 35 35 H 1.08999 * 109.47208 * 299.99897 * 5 4 3 36 36 H 1.08994 * 109.47415 * 60.00182 * 5 4 3 37 37 H 1.09008 * 109.47004 * 180.02562 * 5 4 3 38 38 H 1.08998 * 109.47333 * 59.99721 * 8 6 3 39 39 H 1.09002 * 109.47271 * 300.00155 * 8 6 3 40 40 H 0.97000 * 120.00069 * 0.02562 * 9 8 6 41 41 H 0.97000 * 120.00483 * 359.73178 * 12 10 9 42 42 H 1.08001 * 126.06561 * 359.97438 * 14 13 12 43 43 H 1.09000 * 109.46414 * 270.31468 * 16 15 14 44 44 H 1.08994 * 109.47042 * 30.31368 * 16 15 14 45 45 H 1.08993 * 109.47184 * 150.31712 * 16 15 14 46 46 H 1.09001 * 109.47222 * 29.99739 * 18 17 15 47 47 H 1.08997 * 109.47398 * 150.00005 * 18 17 15 48 48 H 0.97000 * 119.99662 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8314 -1.7103 6 6 2.2431 2.0165 1.1672 7 8 2.0405 1.4448 2.2176 8 6 2.7448 3.4374 1.1674 9 7 2.9072 3.8980 2.5486 10 6 3.3489 5.1472 2.7949 11 8 3.6121 5.8923 1.8707 12 7 3.5035 5.5690 4.0656 13 6 3.9684 6.8665 4.3219 14 6 4.3141 7.8246 3.3555 15 6 4.7100 8.9436 4.0036 16 6 5.1668 10.2274 3.3597 17 7 4.6291 8.7045 5.3294 18 6 4.9708 9.6483 6.3965 19 6 6.4256 9.4932 6.7577 20 1 7.0349 8.7646 6.2435 21 6 6.9790 10.2819 7.7439 22 7 6.2374 11.1700 8.3691 23 14 8.7822 10.0890 8.1920 24 1 9.6213 10.3656 6.9985 25 1 9.1285 11.0457 9.2737 26 1 9.0301 8.7019 8.6607 27 7 4.1618 7.3960 5.5067 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6878 -2.0283 34 1 2.0955 3.1412 -1.1383 35 1 4.3883 2.2155 -0.9507 36 1 3.8745 0.7623 -1.8408 37 1 3.8893 2.3457 -2.6541 38 1 2.0266 4.0765 0.6538 39 1 3.7049 3.4838 0.6533 40 1 2.6975 3.3035 3.2858 41 1 3.2932 4.9747 4.8029 42 1 4.2693 7.6923 2.2845 43 1 6.2445 10.1908 3.2011 44 1 4.6625 10.3527 2.4016 45 1 4.9236 11.0670 4.0108 46 1 4.7883 10.6666 6.0531 47 1 4.3552 9.4446 7.2727 48 1 6.6267 11.7247 9.0631 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777616516.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:42 Heat of formation + Delta-G solvation = -7.289470 kcal Electronic energy + Delta-G solvation = -28557.823327 eV Core-core repulsion = 24456.034770 eV Total energy + Delta-G solvation = -4101.788557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.32832 -41.47018 -40.59566 -37.39868 -36.44454 -35.65648 -35.27501 -33.24110 -32.87808 -32.56697 -30.73034 -29.06215 -28.15282 -27.81415 -25.06698 -24.48867 -24.06220 -22.76706 -21.47727 -21.12081 -20.23400 -19.22476 -18.76717 -18.08194 -17.65198 -17.52210 -17.21554 -16.95208 -16.47435 -16.20200 -15.88120 -15.64297 -15.52262 -14.86454 -14.71622 -14.65860 -14.50875 -14.31138 -14.06582 -13.77581 -13.69132 -13.56200 -13.48008 -13.37870 -13.11495 -12.92518 -12.83983 -12.64658 -12.55384 -12.23093 -12.11914 -12.01250 -11.91596 -11.57708 -11.36105 -11.18984 -11.03504 -10.71982 -10.36749 -9.79904 -9.55397 -9.07452 -8.31073 -6.48728 0.97720 1.05323 1.38754 1.40291 1.40695 1.49395 1.65328 1.82673 2.16461 2.35786 2.37343 2.98301 3.09137 3.30172 3.87439 4.02487 4.15673 4.18742 4.21503 4.24630 4.29888 4.47015 4.47489 4.52865 4.62326 4.74938 4.75247 4.78892 4.90031 4.91904 4.97409 5.00045 5.02644 5.04734 5.10319 5.20942 5.29176 5.32435 5.40572 5.55170 5.55268 5.79370 5.83042 5.97369 6.23282 6.29381 6.62057 6.68079 6.95877 7.10849 7.21901 7.33621 8.74422 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.001889 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.556610 B =14818.798953 C =15036.036890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.093 3.907 5 C -0.172 4.172 6 C 0.511 3.489 7 O -0.572 6.572 8 C 0.121 3.879 9 N -0.721 5.721 10 C 0.719 3.281 11 O -0.591 6.591 12 N -0.637 5.637 13 C 0.292 3.708 14 C -0.295 4.295 15 C 0.087 3.913 16 C -0.081 4.081 17 N -0.343 5.343 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.022 3.978 22 N -0.918 5.918 23 Si 0.971 3.029 24 H -0.265 1.265 25 H -0.273 1.273 26 H -0.277 1.277 27 N -0.362 5.362 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.109 0.891 40 H 0.413 0.587 41 H 0.420 0.580 42 H 0.171 0.829 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.023 0.977 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 -19.664 -23.764 32.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.014 4.014 3 N -0.334 5.334 4 C -0.028 4.028 5 C -0.230 4.230 6 C 0.298 3.702 7 O -0.452 6.452 8 C -0.006 4.006 9 N -0.380 5.380 10 C 0.418 3.582 11 O -0.469 6.469 12 N -0.288 5.288 13 C 0.037 3.963 14 C -0.326 4.326 15 C -0.043 4.043 16 C -0.139 4.139 17 N -0.126 5.126 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.068 0.932 21 C -0.179 4.179 22 N -0.556 5.556 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.197 1.197 26 H -0.202 1.202 27 N -0.193 5.193 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.251 0.749 41 H 0.257 0.743 42 H 0.188 0.812 43 H 0.102 0.898 44 H 0.126 0.874 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.331 -19.320 -22.617 31.175 hybrid contribution 0.596 -0.499 0.803 1.117 sum -8.736 -19.819 -21.815 30.741 Atomic orbital electron populations 1.22084 0.95243 1.03017 1.01738 1.21576 0.94814 0.81311 1.03733 1.48079 1.64502 1.14842 1.06022 1.21956 0.98047 0.98432 0.84376 1.22213 0.95720 1.02746 1.02354 1.20602 0.77195 0.88347 0.84013 1.90696 1.53826 1.68308 1.32335 1.21131 1.04255 0.92118 0.83056 1.44582 1.71200 1.12541 1.09700 1.15514 0.78347 0.82352 0.81946 1.90839 1.57384 1.55235 1.43425 1.41342 1.68083 1.11360 1.08021 1.18926 0.98705 0.86588 0.92113 1.21415 1.17841 0.92244 1.01109 1.21767 0.99239 0.99291 0.84013 1.20468 1.02424 0.90151 1.00865 1.48764 1.48730 1.08922 1.06144 1.19242 0.95757 0.85736 0.83650 1.21410 0.94850 1.21410 1.21429 0.93242 1.25730 1.03133 0.94070 0.94933 1.69995 1.38182 1.22596 1.24810 0.85417 0.78715 0.78033 0.78386 1.18920 1.19750 1.20229 1.77183 1.27285 0.94504 1.20297 0.90271 0.94659 0.91251 0.87604 0.91681 0.87468 0.89037 0.93524 0.92054 0.89626 0.86923 0.87276 0.74856 0.74321 0.81202 0.89825 0.87413 0.91338 0.92870 0.95871 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 10.24 71.98 0.74 -0.73 16 2 C 0.11 1.03 6.13 86.38 0.53 1.56 16 3 N -0.60 -6.68 2.47 -821.80 -2.03 -8.71 16 4 C 0.09 0.48 5.93 86.38 0.51 0.99 16 5 C -0.17 -0.94 10.24 71.98 0.74 -0.20 16 6 C 0.51 8.84 7.74 87.66 0.68 9.52 16 7 O -0.57 -13.96 15.25 -3.05 -0.05 -14.01 16 8 C 0.12 2.04 4.71 85.63 0.40 2.44 16 9 N -0.72 -15.92 5.53 -482.30 -2.67 -18.59 16 10 C 0.72 21.30 8.53 179.05 1.53 22.82 16 11 O -0.59 -20.34 13.47 -4.01 -0.05 -20.40 16 12 N -0.64 -20.65 5.46 -321.23 -1.75 -22.41 16 13 C 0.29 12.22 8.11 133.31 1.08 13.31 16 14 C -0.30 -12.20 9.52 22.11 0.21 -11.99 16 15 C 0.09 3.72 6.93 41.39 0.29 4.00 16 16 C -0.08 -2.71 10.11 71.24 0.72 -1.99 16 17 N -0.34 -16.91 3.59 -338.44 -1.22 -18.13 16 18 C 0.28 14.76 5.99 85.63 0.51 15.28 16 19 C -0.55 -31.37 9.39 25.60 0.24 -31.13 16 20 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 21 C 0.02 1.23 5.46 84.66 0.46 1.70 16 22 N -0.92 -52.28 13.29 21.45 0.28 -52.00 16 23 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 N -0.36 -17.49 12.59 -54.43 -0.69 -18.17 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.45 8.07 -2.39 -0.02 0.43 16 32 H 0.06 0.91 7.42 -2.39 -0.02 0.90 16 33 H 0.11 0.11 8.07 -2.39 -0.02 0.09 16 34 H 0.09 0.40 6.44 -2.38 -0.02 0.38 16 35 H 0.05 0.41 7.22 -2.39 -0.02 0.39 16 36 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.11 1.62 7.40 -2.39 -0.02 1.60 16 39 H 0.11 1.67 7.19 -2.39 -0.02 1.65 16 40 H 0.41 8.61 7.45 -92.71 -0.69 7.92 16 41 H 0.42 11.38 8.84 -92.71 -0.82 10.56 16 42 H 0.17 6.68 5.91 -2.91 -0.02 6.66 16 43 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.07 2.34 7.07 -2.39 -0.02 2.32 16 46 H 0.05 2.81 7.04 -2.39 -0.02 2.79 16 47 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -75.48 400.90 1.98 -73.50 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: -0.51 Total: 27.81 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 8.64 Total: 25.58 kcal Atomic # 7 Polarization: -129.94 SS G_CDS: -8.07 Total: -138.00 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.10 Total: -34.40 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -75.48 1.98 -73.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777616516.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.207 kcal (2) G-P(sol) polarization free energy of solvation -75.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds