Wall clock time and date at job start Tue Mar 31 2020 20:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46939 * 2 1 4 4 C 1.46501 * 120.00164 * 265.98298 * 3 2 1 5 5 C 1.52992 * 109.47224 * 270.00551 * 4 3 2 6 6 C 1.53005 * 109.47185 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47111 * 179.97438 * 6 5 4 8 8 C 1.46894 * 110.99964 * 169.99821 * 7 6 5 9 9 C 1.46890 * 110.99987 * 293.95415 * 7 6 5 10 10 C 1.34773 * 120.00370 * 85.98291 * 3 2 1 11 11 O 1.21366 * 120.00364 * 174.54283 * 10 3 2 12 12 C 1.49315 * 119.99680 * 354.54913 * 10 3 2 13 13 O 1.21405 * 119.99870 * 354.48486 * 12 10 3 14 14 N 1.34781 * 120.00009 * 174.48955 * 12 10 3 15 15 C 1.40288 * 119.99948 * 179.97438 * 14 12 10 16 16 C 1.40719 * 126.10018 * 359.97012 * 15 14 12 17 17 N 1.30879 * 108.37580 * 179.74244 * 16 15 14 18 18 N 1.40060 * 108.43292 * 0.44153 * 17 16 15 19 19 C 1.37302 * 126.05378 * 179.81749 * 18 17 16 20 20 H 1.07992 * 120.00004 * 173.76936 * 19 18 17 21 21 C 1.39004 * 119.99768 * 354.05021 * 19 18 17 22 22 N 1.31286 * 120.00400 * 5.59233 * 21 19 18 23 23 Si 1.86800 * 119.99852 * 185.59506 * 21 19 18 24 24 H 1.48497 * 109.47351 * 94.97286 * 23 21 19 25 25 H 1.48499 * 109.47020 * 214.97041 * 23 21 19 26 26 H 1.48502 * 109.46948 * 334.96990 * 23 21 19 27 27 C 1.35788 * 126.09944 * 179.97438 * 15 14 12 28 28 H 1.09007 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47120 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47587 * 60.00062 * 1 2 3 31 31 H 1.08999 * 109.46698 * 240.00045 * 2 1 3 32 32 H 1.08993 * 109.47170 * 119.99750 * 2 1 3 33 33 H 1.09005 * 109.46684 * 30.00079 * 4 3 2 34 34 H 1.09003 * 109.47497 * 149.99836 * 4 3 2 35 35 H 1.09005 * 109.46905 * 299.99392 * 5 4 3 36 36 H 1.09000 * 109.47694 * 59.99747 * 5 4 3 37 37 H 1.08993 * 109.47069 * 299.99297 * 6 5 4 38 38 H 1.08995 * 109.47033 * 59.99838 * 6 5 4 39 39 H 1.09004 * 109.47147 * 60.00093 * 8 7 6 40 40 H 1.08998 * 109.47324 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47143 * 300.00239 * 8 7 6 42 42 H 1.09005 * 109.47304 * 60.00048 * 9 7 6 43 43 H 1.09004 * 109.46909 * 180.02562 * 9 7 6 44 44 H 1.09000 * 109.47309 * 299.99850 * 9 7 6 45 45 H 0.96996 * 119.99808 * 359.97438 * 14 12 10 46 46 H 1.08002 * 125.81345 * 0.02980 * 16 15 14 47 47 H 0.96994 * 119.99897 * 180.02562 * 22 21 19 48 48 H 1.07995 * 126.24769 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3462 2.0422 -1.2656 5 6 3.8170 1.7927 -1.6052 6 6 4.1593 2.4825 -2.9273 7 7 5.5717 2.2434 -3.2531 8 6 5.8785 2.6839 -4.6204 9 6 6.4548 2.8977 -2.2786 10 6 2.1658 2.0439 1.1643 11 8 2.6628 3.1511 1.1736 12 6 1.7179 1.4157 2.4427 13 8 1.1308 0.3532 2.4239 14 7 1.9654 2.0283 3.6174 15 6 1.5441 1.4384 4.8185 16 6 0.8564 0.2173 4.9460 17 7 0.6406 -0.0039 6.2178 18 7 1.1701 1.0666 6.9495 19 6 1.1397 1.2054 8.3152 20 1 1.6662 2.0218 8.7868 21 6 0.4360 0.2916 9.0911 22 7 -0.1073 -0.7642 8.5311 23 14 0.2632 0.5661 10.9308 24 1 -1.0217 1.2562 11.2098 25 1 0.2838 -0.7434 11.6307 26 1 1.3902 1.4036 11.4143 27 6 1.7270 1.9439 6.0655 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7167 1.6399 -2.0594 34 1 2.1718 3.1141 -1.1716 35 1 4.4465 2.1950 -0.8114 36 1 3.9914 0.7208 -1.6993 37 1 3.5299 2.0798 -3.7208 38 1 3.9848 3.5543 -2.8337 39 1 5.6742 3.7506 -4.7129 40 1 6.9301 2.4950 -4.8357 41 1 5.2585 2.1327 -5.3274 42 1 6.2539 2.5019 -1.2830 43 1 7.4944 2.7050 -2.5436 44 1 6.2715 3.9721 -2.2862 45 1 2.4347 2.8770 3.6324 46 1 0.5614 -0.4297 4.1331 47 1 -0.5986 -1.4016 9.0726 48 1 2.2220 2.8715 6.3121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787919160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:24 Heat of formation + Delta-G solvation = 32.413207 kcal Electronic energy + Delta-G solvation = -29061.508256 eV Core-core repulsion = 24961.441336 eV Total energy + Delta-G solvation = -4100.066919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.72254 -39.58868 -38.24593 -37.74402 -36.42709 -34.26819 -33.18829 -32.70776 -30.32713 -30.10321 -28.12957 -27.91470 -26.97931 -25.24554 -24.11068 -23.40810 -22.23849 -21.14754 -20.94435 -19.58306 -19.28896 -17.72539 -17.29295 -16.77626 -16.03202 -15.84683 -15.65026 -15.50768 -15.14466 -15.06777 -14.85018 -14.34064 -14.12234 -13.98661 -13.87640 -13.34375 -13.19724 -12.94972 -12.73815 -12.70632 -12.41523 -12.27912 -12.13596 -11.96567 -11.76389 -11.73229 -11.54904 -11.44874 -11.31529 -11.06727 -10.98267 -10.85763 -10.72798 -10.55211 -10.14852 -9.23008 -8.95399 -8.86038 -8.81103 -8.71268 -8.12927 -6.77222 -6.61401 -4.28214 1.67234 2.52940 2.92800 3.03470 3.08614 3.31495 3.57681 3.71423 3.71808 3.86813 4.37058 4.52256 4.62051 4.76560 4.79888 4.96409 4.97042 5.02154 5.04169 5.06441 5.11303 5.24976 5.26348 5.35718 5.42479 5.49056 5.49972 5.57373 5.63896 5.78640 5.85820 6.00013 6.10158 6.19719 6.34222 6.36374 6.51239 6.66187 6.68418 6.77098 6.88962 6.96632 7.14664 7.16741 7.72483 7.83695 8.11597 8.18650 8.50095 8.69964 9.31097 9.59713 10.34658 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002040 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.206354 B =13722.607785 C =14443.058358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.586 5.586 4 C 0.117 3.883 5 C -0.133 4.133 6 C 0.058 3.942 7 N -0.548 5.548 8 C 0.024 3.976 9 C 0.020 3.980 10 C 0.513 3.487 11 O -0.531 6.531 12 C 0.482 3.518 13 O -0.513 6.513 14 N -0.584 5.584 15 C -0.068 4.068 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.935 3.065 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.077 4.077 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.024 0.976 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.026 0.974 45 H 0.408 0.592 46 H 0.178 0.822 47 H 0.276 0.724 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 5.215 -20.506 22.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.319 5.319 4 C -0.006 4.006 5 C -0.172 4.172 6 C -0.071 4.071 7 N -0.272 5.272 8 C -0.124 4.124 9 C -0.128 4.128 10 C 0.297 3.703 11 O -0.407 6.407 12 C 0.263 3.737 13 O -0.390 6.390 14 N -0.227 5.227 15 C -0.174 4.174 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.455 4.455 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.394 5.394 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.243 0.757 46 H 0.195 0.805 47 H 0.086 0.914 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.174 3.526 -19.573 20.824 hybrid contribution 0.411 2.065 0.056 2.106 sum 6.585 5.591 -19.517 21.343 Atomic orbital electron populations 1.22115 0.95272 1.02460 1.02013 1.21952 0.95384 0.80637 1.03899 1.47817 1.63800 1.15124 1.05201 1.21471 0.95510 0.98924 0.84742 1.21965 0.96264 1.01985 0.96967 1.22055 0.88866 0.98522 0.97619 1.61966 1.03991 1.58507 1.02716 1.22379 1.02030 0.98163 0.89833 1.22453 0.97012 0.96484 0.96840 1.20351 0.79135 0.85524 0.85320 1.90715 1.43048 1.19997 1.86944 1.19632 0.83399 0.86255 0.84402 1.90608 1.41084 1.21356 1.85991 1.42173 1.53621 1.23301 1.03598 1.17249 1.16470 1.00038 0.83618 1.24140 1.03549 0.96749 0.95731 1.78253 1.22146 1.07533 1.01287 1.44554 1.30219 1.10670 1.05130 1.19924 1.34126 1.14209 0.77235 0.86464 1.25662 0.95375 0.94617 1.01422 1.70211 1.24896 1.07636 1.36623 0.85796 0.79416 0.78567 0.80303 1.19591 1.20058 1.18727 1.21311 1.13058 1.00007 0.88481 0.91626 0.90979 0.93798 0.91199 0.87568 0.90122 0.89937 0.91070 0.90728 0.90654 0.94540 0.95704 0.91374 0.91355 0.90831 0.91480 0.95541 0.75734 0.80509 0.91380 0.83428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.66 37.16 0.36 -1.51 16 2 C 0.10 1.18 5.68 -4.04 -0.02 1.16 16 3 N -0.59 -7.22 2.48 -174.25 -0.43 -7.65 16 4 C 0.12 1.12 5.35 -4.05 -0.02 1.10 16 5 C -0.13 -1.23 5.46 -26.73 -0.15 -1.38 16 6 C 0.06 0.46 4.96 -3.82 -0.02 0.44 16 7 N -0.55 -4.69 5.02 -251.27 -1.26 -5.95 16 8 C 0.02 0.16 9.57 60.06 0.57 0.74 16 9 C 0.02 0.17 9.32 60.06 0.56 0.73 16 10 C 0.51 7.88 7.69 -11.65 -0.09 7.79 16 11 O -0.53 -8.82 16.12 5.48 0.09 -8.73 16 12 C 0.48 8.53 7.62 -11.65 -0.09 8.44 16 13 O -0.51 -9.64 8.54 5.45 0.05 -9.59 16 14 N -0.58 -10.92 5.45 -10.45 -0.06 -10.98 16 15 C -0.07 -1.54 6.90 -83.93 -0.58 -2.12 16 16 C -0.03 -0.66 10.84 -17.02 -0.18 -0.84 16 17 N -0.26 -7.41 10.41 30.81 0.32 -7.09 16 18 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 19 C -0.32 -8.41 10.24 -14.82 -0.15 -8.57 16 20 H 0.12 2.74 7.84 -52.49 -0.41 2.32 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.05 11.84 55.50 0.66 -20.39 16 23 Si 0.94 18.66 29.56 -169.99 -5.02 13.64 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.99 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.05 6.45 -51.93 -0.33 0.72 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.62 8.04 -51.93 -0.42 0.21 16 32 H 0.11 1.45 5.85 -51.93 -0.30 1.14 16 33 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.08 0.87 7.50 -51.93 -0.39 0.48 16 35 H 0.07 0.80 6.55 -51.93 -0.34 0.46 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 38 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 39 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 41 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 43 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 44 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.41 6.68 8.30 -40.82 -0.34 6.34 16 46 H 0.18 4.30 5.92 -52.49 -0.31 3.99 16 47 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.15 2.91 8.06 -52.49 -0.42 2.48 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -31.56 393.36 -7.25 -38.81 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -7.38 Total: 10.71 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.09 Total: 5.09 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.81 Total: -55.85 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: 0.13 Total: -18.32 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.56 -7.25 -38.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787919160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.222 kcal (2) G-P(sol) polarization free energy of solvation -31.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds