Wall clock time and date at job start Tue Mar 31 2020 20:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46939 * 2 1 4 4 C 1.46501 * 120.00164 * 265.98298 * 3 2 1 5 5 C 1.52992 * 109.47224 * 270.00551 * 4 3 2 6 6 C 1.53005 * 109.47185 * 179.97438 * 5 4 3 7 7 N 1.46907 * 109.47111 * 179.97438 * 6 5 4 8 8 C 1.46894 * 110.99964 * 169.99821 * 7 6 5 9 9 C 1.46890 * 110.99987 * 293.95415 * 7 6 5 10 10 C 1.34773 * 120.00370 * 85.98291 * 3 2 1 11 11 O 1.21366 * 120.00364 * 174.54283 * 10 3 2 12 12 C 1.49315 * 119.99680 * 354.54913 * 10 3 2 13 13 O 1.21405 * 119.99870 * 354.48486 * 12 10 3 14 14 N 1.34781 * 120.00009 * 174.48955 * 12 10 3 15 15 C 1.40288 * 119.99948 * 179.97438 * 14 12 10 16 16 C 1.40719 * 126.10018 * 359.97012 * 15 14 12 17 17 N 1.30879 * 108.37580 * 179.74244 * 16 15 14 18 18 N 1.40060 * 108.43292 * 0.44153 * 17 16 15 19 19 C 1.37302 * 126.05378 * 179.81749 * 18 17 16 20 20 H 1.07992 * 120.00004 * 173.76936 * 19 18 17 21 21 C 1.39004 * 119.99768 * 354.05021 * 19 18 17 22 22 N 1.31286 * 120.00400 * 5.59233 * 21 19 18 23 23 Si 1.86800 * 119.99852 * 185.59506 * 21 19 18 24 24 H 1.48497 * 109.47351 * 94.97286 * 23 21 19 25 25 H 1.48499 * 109.47020 * 214.97041 * 23 21 19 26 26 H 1.48502 * 109.46948 * 334.96990 * 23 21 19 27 27 C 1.35788 * 126.09944 * 179.97438 * 15 14 12 28 28 H 1.09007 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47120 * 300.00152 * 1 2 3 30 30 H 1.08998 * 109.47587 * 60.00062 * 1 2 3 31 31 H 1.08999 * 109.46698 * 240.00045 * 2 1 3 32 32 H 1.08993 * 109.47170 * 119.99750 * 2 1 3 33 33 H 1.09005 * 109.46684 * 30.00079 * 4 3 2 34 34 H 1.09003 * 109.47497 * 149.99836 * 4 3 2 35 35 H 1.09005 * 109.46905 * 299.99392 * 5 4 3 36 36 H 1.09000 * 109.47694 * 59.99747 * 5 4 3 37 37 H 1.08993 * 109.47069 * 299.99297 * 6 5 4 38 38 H 1.08995 * 109.47033 * 59.99838 * 6 5 4 39 39 H 1.09004 * 109.47147 * 60.00093 * 8 7 6 40 40 H 1.08998 * 109.47324 * 180.02562 * 8 7 6 41 41 H 1.09000 * 109.47143 * 300.00239 * 8 7 6 42 42 H 1.09005 * 109.47304 * 60.00048 * 9 7 6 43 43 H 1.09004 * 109.46909 * 180.02562 * 9 7 6 44 44 H 1.09000 * 109.47309 * 299.99850 * 9 7 6 45 45 H 0.96996 * 119.99808 * 359.97438 * 14 12 10 46 46 H 1.08002 * 125.81345 * 0.02980 * 16 15 14 47 47 H 0.96994 * 119.99897 * 180.02562 * 22 21 19 48 48 H 1.07995 * 126.24769 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3462 2.0422 -1.2656 5 6 3.8170 1.7927 -1.6052 6 6 4.1593 2.4825 -2.9273 7 7 5.5717 2.2434 -3.2531 8 6 5.8785 2.6839 -4.6204 9 6 6.4548 2.8977 -2.2786 10 6 2.1658 2.0439 1.1643 11 8 2.6628 3.1511 1.1736 12 6 1.7179 1.4157 2.4427 13 8 1.1308 0.3532 2.4239 14 7 1.9654 2.0283 3.6174 15 6 1.5441 1.4384 4.8185 16 6 0.8564 0.2173 4.9460 17 7 0.6406 -0.0039 6.2178 18 7 1.1701 1.0666 6.9495 19 6 1.1397 1.2054 8.3152 20 1 1.6662 2.0218 8.7868 21 6 0.4360 0.2916 9.0911 22 7 -0.1073 -0.7642 8.5311 23 14 0.2632 0.5661 10.9308 24 1 -1.0217 1.2562 11.2098 25 1 0.2838 -0.7434 11.6307 26 1 1.3902 1.4036 11.4143 27 6 1.7270 1.9439 6.0655 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.7167 1.6399 -2.0594 34 1 2.1718 3.1141 -1.1716 35 1 4.4465 2.1950 -0.8114 36 1 3.9914 0.7208 -1.6993 37 1 3.5299 2.0798 -3.7208 38 1 3.9848 3.5543 -2.8337 39 1 5.6742 3.7506 -4.7129 40 1 6.9301 2.4950 -4.8357 41 1 5.2585 2.1327 -5.3274 42 1 6.2539 2.5019 -1.2830 43 1 7.4944 2.7050 -2.5436 44 1 6.2715 3.9721 -2.2862 45 1 2.4347 2.8770 3.6324 46 1 0.5614 -0.4297 4.1331 47 1 -0.5986 -1.4016 9.0726 48 1 2.2220 2.8715 6.3121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787919160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:22 Heat of formation + Delta-G solvation = 10.479591 kcal Electronic energy + Delta-G solvation = -29062.459369 eV Core-core repulsion = 24961.441336 eV Total energy + Delta-G solvation = -4101.018032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.13611 -41.29061 -39.50822 -38.62927 -37.52634 -35.89640 -34.94487 -33.54829 -32.27879 -31.06886 -29.88109 -28.50413 -28.01353 -26.90474 -25.36012 -24.29475 -23.40022 -22.79898 -21.80098 -21.33549 -20.66850 -19.37275 -18.65806 -17.95473 -17.45199 -17.05787 -16.81112 -16.74263 -16.39189 -16.11190 -15.86100 -15.61579 -15.42608 -15.19646 -14.92617 -14.83078 -14.80001 -14.46583 -13.75395 -13.51632 -13.35771 -13.32973 -13.15247 -13.06199 -12.99512 -12.93923 -12.80092 -12.59349 -12.40566 -12.25134 -12.20681 -12.10516 -12.06405 -11.62996 -11.53908 -11.03907 -10.84826 -10.29595 -10.12492 -9.87299 -9.32858 -8.59085 -8.48970 -6.25842 0.32042 1.29493 1.30319 1.41882 1.58647 1.72503 2.05461 2.11134 2.45457 2.55609 2.85571 3.03915 3.06903 3.46002 3.90282 4.05625 4.13966 4.20281 4.33061 4.40144 4.41133 4.48146 4.49720 4.54312 4.59795 4.64654 4.66379 4.75087 4.78627 4.86955 4.97934 4.99557 4.99677 5.03093 5.04020 5.13121 5.22146 5.27713 5.31234 5.47249 5.54399 5.92077 5.99098 6.04771 6.10776 6.23629 6.43642 6.68290 6.78607 7.11512 7.42246 7.64543 8.50484 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002040 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.206354 B =13722.607785 C =14443.058358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 N -0.574 5.574 4 C 0.115 3.885 5 C -0.123 4.123 6 C 0.061 3.939 7 N -0.562 5.562 8 C 0.024 3.976 9 C 0.022 3.978 10 C 0.517 3.483 11 O -0.545 6.545 12 C 0.482 3.518 13 O -0.522 6.522 14 N -0.587 5.587 15 C -0.053 4.053 16 C -0.045 4.045 17 N -0.309 5.309 18 N -0.164 5.164 19 C -0.354 4.354 20 H 0.140 0.860 21 C -0.004 4.004 22 N -0.820 5.820 23 Si 1.018 2.982 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.033 0.967 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.024 0.976 45 H 0.420 0.580 46 H 0.179 0.821 47 H 0.278 0.722 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.537 6.280 -22.123 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.306 5.306 4 C -0.006 4.006 5 C -0.162 4.162 6 C -0.067 4.067 7 N -0.286 5.286 8 C -0.124 4.124 9 C -0.127 4.127 10 C 0.299 3.701 11 O -0.423 6.423 12 C 0.264 3.736 13 O -0.399 6.399 14 N -0.232 5.232 15 C -0.159 4.159 16 C -0.220 4.220 17 N -0.140 5.140 18 N 0.067 4.933 19 C -0.486 4.486 20 H 0.157 0.843 21 C -0.216 4.216 22 N -0.448 5.448 23 Si 0.837 3.163 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.167 1.167 27 C -0.228 4.228 28 H 0.092 0.908 29 H 0.056 0.944 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.043 0.957 45 H 0.257 0.743 46 H 0.195 0.805 47 H 0.087 0.913 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.850 4.602 -21.254 22.800 hybrid contribution 0.252 1.728 0.299 1.771 sum 7.102 6.330 -20.955 23.014 Atomic orbital electron populations 1.22047 0.95198 1.02816 1.01285 1.22005 0.95338 0.80046 1.04528 1.47927 1.62196 1.15307 1.05151 1.21717 0.96421 0.98601 0.83905 1.21845 0.95408 1.01943 0.97019 1.22034 0.89068 0.98273 0.97319 1.61981 1.04175 1.58876 1.03565 1.22425 1.02654 0.98416 0.88893 1.22423 0.97608 0.96279 0.96365 1.19839 0.79608 0.85417 0.85211 1.90715 1.44090 1.20495 1.87007 1.20243 0.82362 0.85920 0.85092 1.90616 1.40971 1.21884 1.86439 1.42127 1.54422 1.23962 1.02694 1.17279 1.14698 0.98891 0.85056 1.24262 1.04535 0.98074 0.95165 1.78144 1.23895 1.09406 1.02573 1.44816 1.31424 1.11129 1.05883 1.20626 1.35129 1.15378 0.77417 0.84298 1.26861 0.94247 0.93763 1.06762 1.70375 1.26474 1.09092 1.38855 0.84584 0.79868 0.78558 0.73254 1.19175 1.20003 1.16721 1.21984 1.11959 1.00616 0.88198 0.90827 0.94423 0.91649 0.87520 0.90016 0.86733 0.90553 0.93443 0.90659 0.88774 0.94828 0.95506 0.90859 0.90335 0.92094 0.90642 0.95705 0.74299 0.80455 0.91254 0.79822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.36 9.66 71.98 0.70 -2.67 16 2 C 0.10 2.14 5.68 86.38 0.49 2.63 16 3 N -0.57 -13.10 2.48 -823.57 -2.04 -15.14 16 4 C 0.12 1.91 5.35 86.38 0.46 2.37 16 5 C -0.12 -2.03 5.46 30.59 0.17 -1.87 16 6 C 0.06 0.84 4.96 86.30 0.43 1.27 16 7 N -0.56 -8.53 5.02 -948.86 -4.76 -13.29 16 8 C 0.02 0.26 9.57 127.69 1.22 1.49 16 9 C 0.02 0.33 9.32 127.69 1.19 1.52 16 10 C 0.52 15.45 7.69 87.23 0.67 16.12 16 11 O -0.54 -17.64 16.12 -3.30 -0.05 -17.70 16 12 C 0.48 17.05 7.62 87.23 0.66 17.72 16 13 O -0.52 -19.93 8.54 -3.42 -0.03 -19.96 16 14 N -0.59 -21.85 5.45 -305.32 -1.66 -23.52 16 15 C -0.05 -2.43 6.90 37.82 0.26 -2.17 16 16 C -0.04 -2.35 10.84 85.44 0.93 -1.42 16 17 N -0.31 -18.20 10.41 -56.43 -0.59 -18.79 16 18 N -0.16 -9.06 3.73 -189.99 -0.71 -9.77 16 19 C -0.35 -18.68 10.24 84.02 0.86 -17.82 16 20 H 0.14 6.39 7.84 -2.91 -0.02 6.37 16 21 C 0.00 -0.21 5.50 84.96 0.47 0.25 16 22 N -0.82 -46.64 11.84 21.66 0.26 -46.38 16 23 Si 1.02 38.29 29.56 68.60 2.03 40.32 16 24 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 25 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.24 -8.33 7.11 99.48 0.71 -7.62 16 27 C -0.08 -3.58 11.50 83.41 0.96 -2.63 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.04 1.08 6.45 -2.39 -0.02 1.06 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.52 8.04 -2.39 -0.02 1.50 16 32 H 0.08 2.18 5.85 -2.39 -0.01 2.16 16 33 H 0.11 1.19 8.07 -2.38 -0.02 1.18 16 34 H 0.08 1.43 7.50 -2.39 -0.02 1.41 16 35 H 0.05 1.02 6.55 -2.38 -0.02 1.01 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 0.94 8.06 -2.39 -0.02 0.92 16 38 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 39 H 0.03 0.29 8.14 -2.38 -0.02 0.27 16 40 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 41 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 42 H 0.06 1.09 6.47 -2.38 -0.02 1.07 16 43 H 0.07 1.01 8.12 -2.39 -0.02 0.99 16 44 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.42 13.46 8.30 -92.71 -0.77 12.69 16 46 H 0.18 9.02 5.92 -2.91 -0.02 9.01 16 47 H 0.28 14.46 8.31 -92.71 -0.77 13.69 16 48 H 0.18 6.95 8.06 -2.91 -0.02 6.93 16 Total: -1.00 -71.45 393.36 2.11 -69.34 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: 0.21 Total: 40.09 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 9.46 Total: 14.80 kcal Atomic # 7 Polarization: -117.39 SS G_CDS: -9.51 Total: -126.89 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.08 Total: -37.66 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -71.45 2.11 -69.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787919160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds