Wall clock time and date at job start Tue Mar 31 2020 20:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00064 * 2 1 4 4 C 1.52992 * 109.47058 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47413 * 64.99733 * 4 3 2 6 6 C 1.46494 * 119.99615 * 270.00177 * 5 4 3 7 7 C 1.50708 * 109.47166 * 269.99299 * 6 5 4 8 8 H 1.07999 * 119.99306 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00098 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00105 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47196 * 89.99815 * 11 9 7 13 13 H 1.48506 * 109.46697 * 209.99459 * 11 9 7 14 14 H 1.48491 * 109.47287 * 329.99555 * 11 9 7 15 15 C 1.34774 * 119.99702 * 89.99772 * 5 4 3 16 16 O 1.21594 * 119.99778 * 180.02562 * 15 5 4 17 17 N 1.34774 * 120.00204 * 0.02562 * 15 5 4 18 18 C 1.40199 * 120.00069 * 180.02562 * 17 15 5 19 19 C 1.40645 * 125.93454 * 359.97438 * 18 17 15 20 20 C 1.34493 * 107.75106 * 179.97438 * 19 18 17 21 21 N 1.35545 * 107.97397 * 0.13039 * 20 19 18 22 22 N 1.31472 * 125.93777 * 179.97438 * 18 17 15 23 23 C 1.46659 * 123.57372 * 179.72543 * 21 20 19 24 24 C 1.53385 * 108.23937 * 343.52788 * 23 21 20 25 25 N 1.47103 * 109.73685 * 49.88582 * 24 23 21 26 26 C 1.46898 * 111.01109 * 53.25866 * 25 24 23 27 27 C 1.47363 * 111.06094 * 289.24782 * 25 24 23 28 28 H 1.08994 * 109.47171 * 300.00065 * 1 2 3 29 29 H 1.09003 * 109.46956 * 60.00158 * 1 2 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47082 * 59.99382 * 3 2 1 32 32 H 1.08997 * 109.46590 * 299.99648 * 3 2 1 33 33 H 1.09003 * 109.47416 * 304.99956 * 4 3 2 34 34 H 1.09001 * 109.47006 * 184.99991 * 4 3 2 35 35 H 1.08988 * 109.47866 * 29.99876 * 6 5 4 36 36 H 1.09005 * 109.46707 * 150.00261 * 6 5 4 37 37 H 0.97002 * 120.00016 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00204 * 359.97438 * 17 15 5 39 39 H 1.08001 * 126.12853 * 359.96097 * 19 18 17 40 40 H 1.09006 * 109.70926 * 103.20648 * 23 21 20 41 41 H 1.09000 * 109.71390 * 223.79572 * 23 21 20 42 42 H 1.08997 * 109.43426 * 169.95038 * 24 23 21 43 43 H 1.09005 * 109.42420 * 289.84701 * 24 23 21 44 44 H 1.09003 * 109.46756 * 292.00002 * 26 25 24 45 45 H 1.08998 * 109.47202 * 51.99950 * 26 25 24 46 46 H 1.09002 * 109.46907 * 172.00223 * 26 25 24 47 47 H 1.09002 * 109.74772 * 290.26719 * 27 25 24 48 48 H 1.09000 * 109.74246 * 169.59581 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3401 7 6 5.5018 -1.2982 -0.9410 8 1 6.2201 -0.5462 -0.6496 9 6 5.8614 -2.6292 -0.9479 10 7 4.9864 -3.5450 -1.3023 11 14 7.5909 -3.1319 -0.4525 12 1 7.6332 -3.3844 1.0102 13 1 7.9742 -4.3688 -1.1796 14 1 8.5402 -2.0425 -0.7944 15 6 4.2634 1.3328 -2.3200 16 8 4.6292 0.8175 -3.3588 17 7 4.1446 2.6728 -2.2376 18 6 4.4423 3.4726 -3.3500 19 6 4.8736 3.0112 -4.6066 20 6 5.0500 4.0837 -5.3988 21 7 4.7467 5.1906 -4.6777 22 7 4.3669 4.7842 -3.3996 23 6 4.8280 6.5540 -5.2120 24 6 5.6739 6.5188 -6.4910 25 7 5.1843 5.4549 -7.3812 26 6 3.7426 5.5948 -7.6259 27 6 5.5009 4.1222 -6.8379 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 3.3858 -1.3632 -0.6712 36 1 3.9139 -1.2124 -2.3643 37 1 5.2393 -4.4814 -1.3067 38 1 3.8524 3.0838 -1.4090 39 1 5.0345 1.9803 -4.8856 40 1 3.8271 6.9185 -5.4433 41 1 5.2973 7.2092 -4.4781 42 1 5.6011 7.4795 -7.0006 43 1 6.7146 6.3236 -6.2321 44 1 3.1964 5.3921 -6.7046 45 1 3.5276 6.6099 -7.9599 46 1 3.4341 4.8863 -8.3946 47 1 6.5756 3.9483 -6.8918 48 1 4.9751 3.3572 -7.4091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880815428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:16 Heat of formation + Delta-G solvation = 43.274953 kcal Electronic energy + Delta-G solvation = -30083.028671 eV Core-core repulsion = 25983.432753 eV Total energy + Delta-G solvation = -4099.595919 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65432 -39.71536 -38.05771 -37.49845 -34.99064 -34.32568 -32.82981 -32.41882 -30.62610 -29.62337 -28.52836 -27.34636 -26.94459 -25.95274 -24.66495 -23.14713 -22.75318 -22.24158 -20.88713 -19.54618 -18.88794 -17.42466 -16.94667 -16.45841 -16.38880 -16.14065 -15.88787 -15.56360 -15.41479 -15.11559 -14.85625 -14.64566 -14.55938 -14.09445 -13.89642 -13.43533 -13.30398 -12.89211 -12.86596 -12.46444 -12.35188 -12.16484 -12.07949 -11.94221 -11.87329 -11.71917 -11.63018 -11.22103 -10.89055 -10.84766 -10.54370 -10.40421 -10.36017 -10.06509 -9.55992 -9.45251 -9.18728 -8.88594 -8.54154 -8.32981 -8.03421 -7.55813 -5.94276 -3.98201 1.91510 2.19556 2.97381 3.22805 3.36227 3.42601 3.47881 3.55241 3.94278 4.07677 4.17069 4.32814 4.49948 4.53428 4.57202 4.73452 4.97859 5.04798 5.20062 5.26314 5.29565 5.35776 5.37660 5.39580 5.42483 5.45573 5.52718 5.54120 5.57385 5.58196 5.62955 5.85343 5.88595 5.94287 6.18421 6.47441 6.48234 6.53770 6.82655 7.08223 7.23253 7.39215 7.50194 7.59010 7.65577 7.99407 8.05575 8.34314 8.62756 9.01525 9.24987 9.65796 11.13534 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003184 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.466058 B = 8791.987103 C =10393.760154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.042 3.958 4 C 0.110 3.890 5 N -0.595 5.595 6 C 0.265 3.735 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.705 3.295 16 O -0.559 6.559 17 N -0.657 5.657 18 C 0.330 3.670 19 C -0.241 4.241 20 C 0.042 3.958 21 N -0.376 5.376 22 N -0.333 5.333 23 C 0.106 3.894 24 C 0.039 3.961 25 N -0.535 5.535 26 C 0.015 3.985 27 C 0.118 3.882 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.403 0.597 39 H 0.178 0.822 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.033 0.967 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.429 20.493 -6.091 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.036 4.036 4 C -0.015 4.015 5 N -0.329 5.329 6 C 0.146 3.854 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.406 3.594 16 O -0.434 6.434 17 N -0.311 5.311 18 C 0.073 3.927 19 C -0.272 4.272 20 C -0.085 4.085 21 N -0.162 5.162 22 N -0.163 5.163 23 C -0.018 4.018 24 C -0.090 4.090 25 N -0.256 5.256 26 C -0.133 4.133 27 C -0.012 4.012 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.239 0.761 39 H 0.195 0.805 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.094 0.906 47 H 0.121 0.879 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.111 20.843 -6.703 22.483 hybrid contribution 0.230 -0.534 1.379 1.497 sum -4.882 20.308 -5.324 21.554 Atomic orbital electron populations 1.22705 0.81974 1.02654 0.99115 1.88100 1.18766 1.26669 1.95138 1.23122 0.95220 0.85659 0.99612 1.21502 0.91293 0.98646 0.90075 1.47535 1.67456 1.09447 1.08481 1.19304 0.96751 0.70203 0.99137 1.21494 0.97546 0.92222 1.45264 0.92614 1.24894 0.97313 0.96389 0.95398 1.69945 1.34295 1.00942 1.48060 0.86539 0.84777 0.78037 0.78283 1.20768 1.21172 1.19996 1.15778 0.79261 0.79244 0.85100 1.90812 1.52225 1.71619 1.28699 1.42144 1.71013 1.05347 1.12600 1.19003 0.96584 0.88666 0.88480 1.21506 1.12788 1.00971 0.91889 1.21787 1.02439 0.87438 0.96834 1.47927 1.55187 1.05320 1.07772 1.77159 1.30160 1.10037 0.98974 1.22324 1.02140 0.80403 0.96890 1.22694 0.99471 0.97009 0.89864 1.62504 1.16145 1.02445 1.44504 1.22502 0.87019 1.02766 1.00990 1.21169 1.02624 0.91281 0.86089 0.94674 0.94618 0.89668 0.92919 0.93771 0.88295 0.90717 0.93298 0.93999 0.92853 0.76070 0.80530 0.90257 0.88911 0.87895 0.89308 0.94816 0.91075 0.90635 0.87858 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.35 9.53 -35.23 -0.34 -6.68 16 3 C 0.04 0.61 6.28 37.15 0.23 0.84 16 4 C 0.11 1.79 5.58 -4.04 -0.02 1.77 16 5 N -0.59 -12.82 2.42 -180.80 -0.44 -13.25 16 6 C 0.26 7.03 4.98 -5.19 -0.03 7.00 16 7 C -0.53 -15.08 9.39 -34.44 -0.32 -15.41 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 11 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 C 0.71 15.39 8.25 -86.92 -0.72 14.67 16 16 O -0.56 -14.21 13.05 5.28 0.07 -14.14 16 17 N -0.66 -11.77 5.32 -15.39 -0.08 -11.85 16 18 C 0.33 6.01 8.12 -154.05 -1.25 4.76 16 19 C -0.24 -4.33 9.56 -40.00 -0.38 -4.72 16 20 C 0.04 0.60 5.94 -82.20 -0.49 0.11 16 21 N -0.38 -5.20 3.81 -56.83 -0.22 -5.42 16 22 N -0.33 -5.56 12.65 31.54 0.40 -5.16 16 23 C 0.11 0.96 6.57 -3.76 -0.02 0.94 16 24 C 0.04 0.28 5.96 -3.51 -0.02 0.26 16 25 N -0.53 -4.69 5.23 -243.44 -1.27 -5.96 16 26 C 0.02 0.12 8.69 60.06 0.52 0.65 16 27 C 0.12 1.24 6.16 -4.64 -0.03 1.21 16 28 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.10 1.69 8.07 -51.93 -0.42 1.27 16 34 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 35 H 0.05 1.35 7.11 -51.94 -0.37 0.98 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.40 5.98 6.55 -40.82 -0.27 5.71 16 39 H 0.18 3.57 5.92 -52.49 -0.31 3.26 16 40 H 0.08 0.65 7.16 -51.93 -0.37 0.28 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 44 H 0.03 0.34 6.18 -51.93 -0.32 0.02 16 45 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.10 1.03 8.03 -51.93 -0.42 0.61 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -36.18 386.47 -9.23 -45.42 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -7.38 Total: 4.87 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: -1.51 Total: 15.32 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -0.87 Total: -67.77 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.27 Total: -20.82 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.18 -9.23 -45.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880815428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.692 kcal (2) G-P(sol) polarization free energy of solvation -36.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds