Wall clock time and date at job start Tue Mar 31 2020 20:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00064 * 2 1 4 4 C 1.52992 * 109.47058 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47413 * 64.99733 * 4 3 2 6 6 C 1.46494 * 119.99615 * 270.00177 * 5 4 3 7 7 C 1.50708 * 109.47166 * 269.99299 * 6 5 4 8 8 H 1.07999 * 119.99306 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00098 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00105 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47196 * 89.99815 * 11 9 7 13 13 H 1.48506 * 109.46697 * 209.99459 * 11 9 7 14 14 H 1.48491 * 109.47287 * 329.99555 * 11 9 7 15 15 C 1.34774 * 119.99702 * 89.99772 * 5 4 3 16 16 O 1.21594 * 119.99778 * 180.02562 * 15 5 4 17 17 N 1.34774 * 120.00204 * 0.02562 * 15 5 4 18 18 C 1.40199 * 120.00069 * 180.02562 * 17 15 5 19 19 C 1.40645 * 125.93454 * 359.97438 * 18 17 15 20 20 C 1.34493 * 107.75106 * 179.97438 * 19 18 17 21 21 N 1.35545 * 107.97397 * 0.13039 * 20 19 18 22 22 N 1.31472 * 125.93777 * 179.97438 * 18 17 15 23 23 C 1.46659 * 123.57372 * 179.72543 * 21 20 19 24 24 C 1.53385 * 108.23937 * 343.52788 * 23 21 20 25 25 N 1.47103 * 109.73685 * 49.88582 * 24 23 21 26 26 C 1.46898 * 111.01109 * 53.25866 * 25 24 23 27 27 C 1.47363 * 111.06094 * 289.24782 * 25 24 23 28 28 H 1.08994 * 109.47171 * 300.00065 * 1 2 3 29 29 H 1.09003 * 109.46956 * 60.00158 * 1 2 3 30 30 H 1.09006 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47082 * 59.99382 * 3 2 1 32 32 H 1.08997 * 109.46590 * 299.99648 * 3 2 1 33 33 H 1.09003 * 109.47416 * 304.99956 * 4 3 2 34 34 H 1.09001 * 109.47006 * 184.99991 * 4 3 2 35 35 H 1.08988 * 109.47866 * 29.99876 * 6 5 4 36 36 H 1.09005 * 109.46707 * 150.00261 * 6 5 4 37 37 H 0.97002 * 120.00016 * 180.02562 * 10 9 7 38 38 H 0.97000 * 120.00204 * 359.97438 * 17 15 5 39 39 H 1.08001 * 126.12853 * 359.96097 * 19 18 17 40 40 H 1.09006 * 109.70926 * 103.20648 * 23 21 20 41 41 H 1.09000 * 109.71390 * 223.79572 * 23 21 20 42 42 H 1.08997 * 109.43426 * 169.95038 * 24 23 21 43 43 H 1.09005 * 109.42420 * 289.84701 * 24 23 21 44 44 H 1.09003 * 109.46756 * 292.00002 * 26 25 24 45 45 H 1.08998 * 109.47202 * 51.99950 * 26 25 24 46 46 H 1.09002 * 109.46907 * 172.00223 * 26 25 24 47 47 H 1.09002 * 109.74772 * 290.26719 * 27 25 24 48 48 H 1.09000 * 109.74246 * 169.59581 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1063 -0.8926 -1.3401 7 6 5.5018 -1.2982 -0.9410 8 1 6.2201 -0.5462 -0.6496 9 6 5.8614 -2.6292 -0.9479 10 7 4.9864 -3.5450 -1.3023 11 14 7.5909 -3.1319 -0.4525 12 1 7.6332 -3.3844 1.0102 13 1 7.9742 -4.3688 -1.1796 14 1 8.5402 -2.0425 -0.7944 15 6 4.2634 1.3328 -2.3200 16 8 4.6292 0.8175 -3.3588 17 7 4.1446 2.6728 -2.2376 18 6 4.4423 3.4726 -3.3500 19 6 4.8736 3.0112 -4.6066 20 6 5.0500 4.0837 -5.3988 21 7 4.7467 5.1906 -4.6777 22 7 4.3669 4.7842 -3.3996 23 6 4.8280 6.5540 -5.2120 24 6 5.6739 6.5188 -6.4910 25 7 5.1843 5.4549 -7.3812 26 6 3.7426 5.5948 -7.6259 27 6 5.5009 4.1222 -6.8379 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0902 35 1 3.3858 -1.3632 -0.6712 36 1 3.9139 -1.2124 -2.3643 37 1 5.2393 -4.4814 -1.3067 38 1 3.8524 3.0838 -1.4090 39 1 5.0345 1.9803 -4.8856 40 1 3.8271 6.9185 -5.4433 41 1 5.2973 7.2092 -4.4781 42 1 5.6011 7.4795 -7.0006 43 1 6.7146 6.3236 -6.2321 44 1 3.1964 5.3921 -6.7046 45 1 3.5276 6.6099 -7.9599 46 1 3.4341 4.8863 -8.3946 47 1 6.5756 3.9483 -6.8918 48 1 4.9751 3.3572 -7.4091 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880815428.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:15 Heat of formation + Delta-G solvation = 15.895836 kcal Electronic energy + Delta-G solvation = -30084.215919 eV Core-core repulsion = 25983.432753 eV Total energy + Delta-G solvation = -4100.783166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.83143 -41.28078 -39.06240 -38.69426 -36.66487 -35.87259 -34.65890 -33.64343 -31.79008 -31.11526 -29.64111 -28.70343 -28.20321 -27.13597 -25.69634 -24.92695 -24.12213 -23.22098 -22.37727 -20.87413 -20.15085 -18.85143 -18.55143 -18.10028 -17.66080 -17.24590 -17.03773 -16.79699 -16.67301 -16.35729 -16.13079 -15.95833 -15.79346 -15.56736 -15.14096 -14.88531 -14.51217 -14.38364 -13.99199 -13.68963 -13.61433 -13.36897 -13.22507 -13.07372 -12.94825 -12.86827 -12.77742 -12.60375 -12.52918 -12.38554 -12.16244 -11.99007 -11.84087 -11.72506 -11.60251 -10.98532 -10.60677 -10.55294 -9.81478 -9.64313 -9.58951 -9.10560 -8.15669 -6.30012 0.69637 0.99696 1.38688 1.41805 1.51880 1.55399 1.86174 2.34921 2.44153 2.82451 2.89100 2.91462 3.14013 3.43461 3.49065 3.90719 4.01757 4.08871 4.16211 4.22000 4.28670 4.34358 4.38719 4.45849 4.51417 4.53392 4.55115 4.58433 4.63406 4.73280 4.76702 4.84530 4.85407 4.87726 5.00185 5.04881 5.17041 5.32499 5.58128 5.65454 5.79234 5.82857 5.85229 5.93269 6.06019 6.12781 6.30917 6.60337 6.78626 7.05011 7.34965 7.57048 8.91143 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.003184 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.466058 B = 8791.987103 C =10393.760154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.046 3.954 4 C 0.103 3.897 5 N -0.600 5.600 6 C 0.290 3.710 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.967 3.033 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.703 3.297 16 O -0.604 6.604 17 N -0.640 5.640 18 C 0.306 3.694 19 C -0.286 4.286 20 C 0.065 3.935 21 N -0.366 5.366 22 N -0.339 5.339 23 C 0.094 3.906 24 C 0.042 3.958 25 N -0.531 5.531 26 C 0.016 3.984 27 C 0.118 3.882 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.035 0.965 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.418 0.582 39 H 0.145 0.855 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.140 0.860 43 H 0.090 0.910 44 H 0.011 0.989 45 H 0.097 0.903 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 23.713 -6.011 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.032 4.032 4 C -0.020 4.020 5 N -0.333 5.333 6 C 0.169 3.831 7 C -0.582 4.582 8 H 0.070 0.930 9 C -0.190 4.190 10 N -0.566 5.566 11 Si 0.791 3.209 12 H -0.189 1.189 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.404 3.596 16 O -0.482 6.482 17 N -0.295 5.295 18 C 0.050 3.950 19 C -0.317 4.317 20 C -0.064 4.064 21 N -0.151 5.151 22 N -0.170 5.170 23 C -0.027 4.027 24 C -0.087 4.087 25 N -0.251 5.251 26 C -0.132 4.132 27 C -0.012 4.012 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.053 0.947 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.257 0.743 39 H 0.163 0.837 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.158 0.842 43 H 0.108 0.892 44 H 0.030 0.970 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.133 0.867 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.567 24.157 -6.575 25.449 hybrid contribution -0.008 -1.386 1.257 1.871 sum -4.575 22.771 -5.318 23.827 Atomic orbital electron populations 1.22861 0.80019 1.03220 1.00679 1.88040 1.21126 1.28495 1.95492 1.23156 0.93367 0.85091 1.01582 1.21859 0.93273 0.99756 0.87131 1.47331 1.67758 1.07829 1.10422 1.18634 0.95613 0.73279 0.95624 1.21752 0.98301 0.92594 1.45524 0.93045 1.25810 1.01700 0.96332 0.95142 1.70072 1.36456 1.01381 1.48724 0.85436 0.79199 0.77510 0.78737 1.18933 1.20576 1.19967 1.15851 0.78920 0.80382 0.84424 1.90794 1.54100 1.72888 1.30445 1.41676 1.70505 1.03843 1.13434 1.19134 0.98062 0.89282 0.88530 1.21333 1.16311 1.00766 0.93301 1.22170 0.99789 0.86530 0.97955 1.48411 1.53059 1.06988 1.06690 1.77074 1.30228 1.08865 1.00784 1.22860 1.03767 0.78007 0.98038 1.22878 0.98920 0.98065 0.88835 1.62562 1.16626 1.01678 1.44281 1.22554 0.86154 1.04463 1.00001 1.21337 1.03265 0.92908 0.83644 0.91835 0.94172 0.89785 0.88616 0.93767 0.89160 0.87098 0.94669 0.98791 0.92511 0.74308 0.83692 0.88723 0.87297 0.84222 0.89203 0.97008 0.88450 0.90488 0.86668 0.87349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.41 -14.34 9.53 -148.98 -1.42 -15.76 16 3 C 0.05 1.27 6.28 71.98 0.45 1.72 16 4 C 0.10 3.34 5.58 86.38 0.48 3.82 16 5 N -0.60 -26.98 2.42 -844.20 -2.04 -29.02 16 6 C 0.29 16.32 4.98 85.64 0.43 16.74 16 7 C -0.54 -32.32 9.39 25.60 0.24 -32.08 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.54 5.46 84.65 0.46 1.00 16 10 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 11 Si 0.97 46.20 29.54 68.60 2.03 48.23 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 15 C 0.70 32.31 8.25 179.06 1.48 33.79 16 16 O -0.60 -33.10 13.05 -4.01 -0.05 -33.15 16 17 N -0.64 -23.49 5.32 -320.86 -1.71 -25.20 16 18 C 0.31 11.41 8.12 133.30 1.08 12.50 16 19 C -0.29 -10.83 9.56 22.00 0.21 -10.62 16 20 C 0.07 1.85 5.94 41.18 0.24 2.10 16 21 N -0.37 -9.61 3.81 -333.73 -1.27 -10.88 16 22 N -0.34 -11.08 12.65 -54.14 -0.69 -11.76 16 23 C 0.09 1.42 6.57 86.48 0.57 1.99 16 24 C 0.04 0.45 5.96 86.39 0.51 0.97 16 25 N -0.53 -7.79 5.23 -924.11 -4.83 -12.63 16 26 C 0.02 0.22 8.69 127.69 1.11 1.33 16 27 C 0.12 2.35 6.16 85.52 0.53 2.88 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 3.10 8.07 -2.39 -0.02 3.08 16 34 H 0.11 2.73 6.36 -2.39 -0.02 2.71 16 35 H 0.04 2.06 7.11 -2.39 -0.02 2.04 16 36 H -0.01 -0.39 7.42 -2.38 -0.02 -0.41 16 37 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 38 H 0.42 12.21 6.55 -92.71 -0.61 11.60 16 39 H 0.15 6.45 5.92 -2.91 -0.02 6.43 16 40 H 0.09 1.21 7.16 -2.38 -0.02 1.20 16 41 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.09 1.02 8.07 -2.38 -0.02 1.00 16 44 H 0.01 0.21 6.18 -2.39 -0.01 0.19 16 45 H 0.10 0.81 8.10 -2.39 -0.02 0.79 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.11 2.10 8.03 -2.39 -0.02 2.08 16 Total: -1.00 -84.23 386.47 -0.29 -84.52 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.37 Total: 24.78 kcal Atomic # 6 Polarization: 29.05 SS G_CDS: 9.04 Total: 38.10 kcal Atomic # 7 Polarization: -136.46 SS G_CDS: -10.25 Total: -146.71 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -1.47 Total: -48.91 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -84.23 -0.29 -84.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880815428.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.414 kcal (2) G-P(sol) polarization free energy of solvation -84.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds