Wall clock time and date at job start Tue Mar 31 2020 21:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00017 * 2 1 4 4 C 1.46900 * 111.00286 * 123.95447 * 2 1 3 5 5 C 1.53000 * 109.46962 * 66.04499 * 4 2 1 6 6 C 1.53004 * 109.47373 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.46496 * 119.99972 * 270.00018 * 7 6 5 9 9 C 1.50705 * 109.47235 * 270.00063 * 8 7 6 10 10 H 1.07995 * 119.99521 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00152 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00103 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47273 * 60.00034 * 13 11 9 15 15 H 1.48504 * 109.47070 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47118 * 300.00054 * 13 11 9 17 17 C 1.34777 * 120.00433 * 89.99873 * 7 6 5 18 18 O 1.21576 * 119.99560 * 0.02562 * 17 7 6 19 19 N 1.34776 * 120.00582 * 179.97438 * 17 7 6 20 20 C 1.38525 * 120.00144 * 179.97438 * 19 17 7 21 21 C 1.38328 * 120.21688 * 180.02562 * 20 19 17 22 22 C 1.40327 * 118.43694 * 180.02562 * 21 20 19 23 23 O 1.22053 * 120.64429 * 179.97438 * 22 21 20 24 24 N 1.34949 * 118.71049 * 0.02562 * 22 21 20 25 25 C 1.46499 * 119.86481 * 180.02562 * 24 22 21 26 26 C 1.34784 * 120.26744 * 0.26581 * 24 22 21 27 27 N 1.30481 * 121.69956 * 359.44082 * 26 24 22 28 28 H 1.08994 * 109.46752 * 296.04042 * 1 2 3 29 29 H 1.08997 * 109.46984 * 56.04857 * 1 2 3 30 30 H 1.09002 * 109.46726 * 176.04319 * 1 2 3 31 31 H 1.09004 * 109.47220 * 183.95781 * 3 2 1 32 32 H 1.09002 * 109.47337 * 303.95704 * 3 2 1 33 33 H 1.08998 * 109.47347 * 63.95346 * 3 2 1 34 34 H 1.08992 * 109.47188 * 306.04999 * 4 2 1 35 35 H 1.08995 * 109.46994 * 186.04485 * 4 2 1 36 36 H 1.09008 * 109.47051 * 60.00346 * 5 4 2 37 37 H 1.09000 * 109.47791 * 300.00298 * 5 4 2 38 38 H 1.08995 * 109.46722 * 59.99920 * 6 5 4 39 39 H 1.09006 * 109.46391 * 300.00318 * 6 5 4 40 40 H 1.09005 * 109.47092 * 30.00197 * 8 7 6 41 41 H 1.08997 * 109.47479 * 150.00064 * 8 7 6 42 42 H 0.97000 * 120.00272 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99498 * 0.02562 * 19 17 7 44 44 H 1.08008 * 120.78075 * 359.97438 * 21 20 19 45 45 H 1.09002 * 109.47391 * 89.99466 * 25 24 22 46 46 H 1.09001 * 109.46813 * 329.99523 * 25 24 22 47 47 H 1.09004 * 109.47041 * 209.99650 * 25 24 22 48 48 H 1.07996 * 119.14760 * 179.72598 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1793 -3.0404 2.1554 7 7 1.8313 -4.4543 1.9949 8 6 0.5745 -4.9665 2.5464 9 6 0.8024 -5.4430 3.9578 10 1 1.7851 -5.3711 4.3999 11 6 -0.2439 -5.9697 4.6850 12 7 -1.4409 -6.0559 4.1471 13 14 0.0385 -6.5597 6.4348 14 1 0.5200 -5.4281 7.2671 15 1 -1.2359 -7.0778 6.9942 16 1 1.0557 -7.6417 6.4343 17 6 2.6674 -5.2841 1.3399 18 8 3.7107 -4.8591 0.8827 19 7 2.3475 -6.5850 1.1927 20 6 3.2067 -7.4376 0.5191 21 6 2.8826 -8.7735 0.3649 22 6 3.7803 -9.6038 -0.3234 23 8 3.5349 -10.7888 -0.4823 24 7 4.9207 -9.0669 -0.8054 25 6 5.8755 -9.9105 -1.5285 26 6 5.1870 -7.7587 -0.6200 27 7 4.3593 -6.9735 0.0131 28 1 -0.3632 0.4511 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 2.0659 -2.6213 0.0450 37 1 0.5473 -2.3476 0.9322 38 1 1.7446 -2.6615 3.0803 39 1 3.2636 -2.9355 2.1938 40 1 -0.1723 -4.1724 2.5471 41 1 0.2211 -5.7969 1.9352 42 1 -2.1770 -6.4268 4.6586 43 1 1.5153 -6.9241 1.5579 44 1 1.9606 -9.1684 0.7657 45 1 5.6359 -9.9014 -2.5918 46 1 5.8164 -10.9315 -1.1514 47 1 6.8848 -9.5262 -1.3802 48 1 6.1071 -7.3489 -1.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888512257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:58 Heat of formation + Delta-G solvation = 5.239122 kcal Electronic energy + Delta-G solvation = -29545.618569 eV Core-core repulsion = 25444.373293 eV Total energy + Delta-G solvation = -4101.245276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.59736 -39.82783 -37.77862 -37.29995 -35.99157 -35.04042 -33.57971 -32.85699 -31.44480 -30.28031 -27.65412 -27.57999 -27.46736 -25.84546 -24.56522 -23.46957 -23.07423 -22.06043 -20.68050 -19.93895 -18.26285 -17.58587 -17.05844 -16.79753 -16.50717 -16.25938 -15.70662 -15.49242 -15.17489 -14.99547 -14.61311 -14.53062 -14.29033 -14.12391 -13.81459 -13.35497 -13.32117 -13.04946 -12.94789 -12.76667 -12.44031 -12.40293 -12.15400 -11.82764 -11.69195 -11.66726 -11.29360 -11.15179 -11.02171 -10.97348 -10.83687 -10.37005 -10.18668 -10.12138 -9.96489 -9.85902 -9.12158 -9.11075 -8.66181 -8.35118 -8.03129 -7.74421 -6.28256 -4.37766 0.82554 2.12124 2.55132 2.98419 3.19833 3.25425 3.28309 3.57755 3.91034 4.05951 4.13435 4.25744 4.49427 4.64782 4.84660 5.04806 5.07776 5.08038 5.14546 5.22347 5.28324 5.37677 5.42195 5.54409 5.62978 5.65141 5.68625 5.76076 5.77565 5.83283 5.87624 5.99608 6.13783 6.18241 6.41650 6.55903 6.65972 6.70751 6.91319 6.97606 7.03297 7.06744 7.13767 7.50659 7.66579 7.91050 7.97407 8.07891 8.42930 8.72577 9.13679 9.32620 10.77650 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006906 B = 0.003931 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4053.661893 B = 7121.196540 C =10490.371076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.141 3.859 7 N -0.606 5.606 8 C 0.238 3.762 9 C -0.546 4.546 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.697 3.303 18 O -0.553 6.553 19 N -0.649 5.649 20 C 0.449 3.551 21 C -0.370 4.370 22 C 0.534 3.466 23 O -0.558 6.558 24 N -0.539 5.539 25 C 0.061 3.939 26 C 0.386 3.614 27 N -0.508 5.508 28 H 0.025 0.975 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.268 0.732 43 H 0.430 0.570 44 H 0.153 0.847 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.086 0.914 48 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 5.010 -9.789 14.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.169 4.169 6 C 0.016 3.984 7 N -0.340 5.340 8 C 0.117 3.883 9 C -0.585 4.585 10 H 0.080 0.920 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.725 3.275 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.399 3.601 18 O -0.428 6.428 19 N -0.295 5.295 20 C 0.227 3.773 21 C -0.401 4.401 22 C 0.337 3.663 23 O -0.439 6.439 24 N -0.259 5.259 25 C -0.082 4.082 26 C 0.099 3.901 27 N -0.232 5.232 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.272 0.728 44 H 0.171 0.829 45 H 0.094 0.906 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.451 5.256 -10.317 15.598 hybrid contribution -1.069 -0.825 1.978 2.395 sum 9.382 4.432 -8.340 13.312 Atomic orbital electron populations 1.22439 0.87418 1.02762 1.00092 1.61970 1.08090 1.13407 1.43771 1.22364 1.00731 0.89063 1.00166 1.22067 1.00097 0.93868 0.90873 1.21978 1.01524 0.93277 1.00149 1.21108 1.00603 0.79342 0.97309 1.47442 1.22502 1.08025 1.56057 1.19383 0.80118 0.95156 0.93598 1.21481 0.96225 1.42341 0.98424 0.91958 1.24947 0.94828 0.95221 0.98626 1.69902 1.00526 1.44498 1.37706 0.86548 0.77617 0.79280 0.84032 1.20086 1.21067 1.20011 1.15937 0.83928 0.80315 0.79952 1.90943 1.24033 1.74862 1.52923 1.43050 1.23394 1.08535 1.54541 1.18436 0.86396 0.87164 0.85260 1.22193 1.07018 0.92172 1.18680 1.16597 0.80690 0.88587 0.80388 1.90918 1.75580 1.15645 1.61754 1.46789 1.20946 1.10818 1.47329 1.22101 0.91736 0.97118 0.97258 1.24981 0.97676 0.78881 0.88545 1.68531 1.04399 1.33634 1.16665 0.95653 0.91793 0.90758 0.91428 0.91661 0.95854 0.94697 0.90686 0.90957 0.91782 0.90386 0.90718 0.94009 0.95373 0.92274 0.72824 0.82912 0.90609 0.88934 0.89523 0.77801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.07 0.56 0.80 16 2 N -0.55 -6.92 5.02 -251.27 -1.26 -8.18 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.78 4.96 -3.82 -0.02 0.76 16 5 C -0.13 -2.00 5.46 -26.73 -0.15 -2.15 16 6 C 0.14 2.44 5.41 -4.04 -0.02 2.42 16 7 N -0.61 -12.14 2.46 -180.81 -0.44 -12.58 16 8 C 0.24 5.30 4.93 -5.19 -0.03 5.27 16 9 C -0.55 -13.55 9.39 -34.44 -0.32 -13.88 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -23.54 13.29 55.43 0.74 -22.80 16 13 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.70 14.36 8.24 -86.92 -0.72 13.64 16 18 O -0.55 -12.05 14.17 5.30 0.08 -11.98 16 19 N -0.65 -12.43 5.23 -15.81 -0.08 -12.51 16 20 C 0.45 7.98 7.43 -154.26 -1.15 6.84 16 21 C -0.37 -6.33 9.94 -38.76 -0.39 -6.71 16 22 C 0.53 8.80 7.42 -15.40 -0.11 8.69 16 23 O -0.56 -10.71 16.76 4.87 0.08 -10.63 16 24 N -0.54 -6.46 2.97 -128.82 -0.38 -6.84 16 25 C 0.06 0.46 10.39 59.85 0.62 1.08 16 26 C 0.39 4.41 11.46 -90.63 -1.04 3.38 16 27 N -0.51 -8.35 7.94 -13.48 -0.11 -8.46 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.65 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 31 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.07 0.94 8.06 -51.93 -0.42 0.53 16 36 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 37 H 0.06 1.02 6.55 -51.93 -0.34 0.68 16 38 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 39 H 0.07 1.30 7.42 -51.93 -0.39 0.92 16 40 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 41 H 0.03 0.65 6.36 -51.93 -0.33 0.32 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.43 8.19 6.43 -40.82 -0.26 7.93 16 44 H 0.15 2.58 8.06 -52.48 -0.42 2.16 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.83 7.44 -51.93 -0.39 0.44 16 47 H 0.09 0.33 8.00 -51.93 -0.42 -0.09 16 48 H 0.21 1.25 8.01 -52.49 -0.42 0.83 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -33.05 398.17 -10.16 -43.20 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.48 Total: 7.05 kcal Atomic # 6 Polarization: 24.86 SS G_CDS: -2.28 Total: 22.59 kcal Atomic # 7 Polarization: -69.83 SS G_CDS: -1.54 Total: -71.37 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.05 -10.16 -43.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888512257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.444 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds