Wall clock time and date at job start Tue Mar 31 2020 21:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00017 * 2 1 4 4 C 1.46900 * 111.00286 * 123.95447 * 2 1 3 5 5 C 1.53000 * 109.46962 * 66.04499 * 4 2 1 6 6 C 1.53004 * 109.47373 * 180.02562 * 5 4 2 7 7 N 1.46494 * 109.47372 * 180.02562 * 6 5 4 8 8 C 1.46496 * 119.99972 * 270.00018 * 7 6 5 9 9 C 1.50705 * 109.47235 * 270.00063 * 8 7 6 10 10 H 1.07995 * 119.99521 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00152 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00103 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99987 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47273 * 60.00034 * 13 11 9 15 15 H 1.48504 * 109.47070 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47118 * 300.00054 * 13 11 9 17 17 C 1.34777 * 120.00433 * 89.99873 * 7 6 5 18 18 O 1.21576 * 119.99560 * 0.02562 * 17 7 6 19 19 N 1.34776 * 120.00582 * 179.97438 * 17 7 6 20 20 C 1.38525 * 120.00144 * 179.97438 * 19 17 7 21 21 C 1.38328 * 120.21688 * 180.02562 * 20 19 17 22 22 C 1.40327 * 118.43694 * 180.02562 * 21 20 19 23 23 O 1.22053 * 120.64429 * 179.97438 * 22 21 20 24 24 N 1.34949 * 118.71049 * 0.02562 * 22 21 20 25 25 C 1.46499 * 119.86481 * 180.02562 * 24 22 21 26 26 C 1.34784 * 120.26744 * 0.26581 * 24 22 21 27 27 N 1.30481 * 121.69956 * 359.44082 * 26 24 22 28 28 H 1.08994 * 109.46752 * 296.04042 * 1 2 3 29 29 H 1.08997 * 109.46984 * 56.04857 * 1 2 3 30 30 H 1.09002 * 109.46726 * 176.04319 * 1 2 3 31 31 H 1.09004 * 109.47220 * 183.95781 * 3 2 1 32 32 H 1.09002 * 109.47337 * 303.95704 * 3 2 1 33 33 H 1.08998 * 109.47347 * 63.95346 * 3 2 1 34 34 H 1.08992 * 109.47188 * 306.04999 * 4 2 1 35 35 H 1.08995 * 109.46994 * 186.04485 * 4 2 1 36 36 H 1.09008 * 109.47051 * 60.00346 * 5 4 2 37 37 H 1.09000 * 109.47791 * 300.00298 * 5 4 2 38 38 H 1.08995 * 109.46722 * 59.99920 * 6 5 4 39 39 H 1.09006 * 109.46391 * 300.00318 * 6 5 4 40 40 H 1.09005 * 109.47092 * 30.00197 * 8 7 6 41 41 H 1.08997 * 109.47479 * 150.00064 * 8 7 6 42 42 H 0.97000 * 120.00272 * 179.97438 * 12 11 9 43 43 H 0.97002 * 119.99498 * 0.02562 * 19 17 7 44 44 H 1.08008 * 120.78075 * 359.97438 * 21 20 19 45 45 H 1.09002 * 109.47391 * 89.99466 * 25 24 22 46 46 H 1.09001 * 109.46813 * 329.99523 * 25 24 22 47 47 H 1.09004 * 109.47041 * 209.99650 * 25 24 22 48 48 H 1.07996 * 119.14760 * 179.72598 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1793 -3.0404 2.1554 7 7 1.8313 -4.4543 1.9949 8 6 0.5745 -4.9665 2.5464 9 6 0.8024 -5.4430 3.9578 10 1 1.7851 -5.3711 4.3999 11 6 -0.2439 -5.9697 4.6850 12 7 -1.4409 -6.0559 4.1471 13 14 0.0385 -6.5597 6.4348 14 1 0.5200 -5.4281 7.2671 15 1 -1.2359 -7.0778 6.9942 16 1 1.0557 -7.6417 6.4343 17 6 2.6674 -5.2841 1.3399 18 8 3.7107 -4.8591 0.8827 19 7 2.3475 -6.5850 1.1927 20 6 3.2067 -7.4376 0.5191 21 6 2.8826 -8.7735 0.3649 22 6 3.7803 -9.6038 -0.3234 23 8 3.5349 -10.7888 -0.4823 24 7 4.9207 -9.0669 -0.8054 25 6 5.8755 -9.9105 -1.5285 26 6 5.1870 -7.7587 -0.6200 27 7 4.3593 -6.9735 0.0131 28 1 -0.3632 0.4511 0.9233 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5612 -0.3873 2.0627 35 1 3.0798 -0.6611 1.1755 36 1 2.0659 -2.6213 0.0450 37 1 0.5473 -2.3476 0.9322 38 1 1.7446 -2.6615 3.0803 39 1 3.2636 -2.9355 2.1938 40 1 -0.1723 -4.1724 2.5471 41 1 0.2211 -5.7969 1.9352 42 1 -2.1770 -6.4268 4.6586 43 1 1.5153 -6.9241 1.5579 44 1 1.9606 -9.1684 0.7657 45 1 5.6359 -9.9014 -2.5918 46 1 5.8164 -10.9315 -1.1514 47 1 6.8848 -9.5262 -1.3802 48 1 6.1071 -7.3489 -1.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888512257.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:57 Heat of formation + Delta-G solvation = -15.370315 kcal Electronic energy + Delta-G solvation = -29546.512262 eV Core-core repulsion = 25444.373293 eV Total energy + Delta-G solvation = -4102.138968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79037 -41.34037 -38.94031 -38.50083 -37.27936 -36.63030 -34.90080 -34.61505 -32.80342 -31.56912 -29.29095 -28.51738 -28.44491 -27.06131 -25.66832 -25.08058 -24.48181 -23.28573 -21.78925 -21.36042 -19.68692 -19.01454 -18.55320 -18.15831 -17.96093 -17.37948 -17.03966 -16.56313 -16.49887 -16.36439 -16.22613 -15.73278 -15.53008 -15.32371 -15.02492 -14.59245 -14.55693 -14.50106 -14.22417 -14.00242 -13.58077 -13.37842 -13.31787 -13.18888 -13.15973 -12.74612 -12.65692 -12.58024 -12.42111 -12.29368 -12.16586 -12.07538 -11.75132 -11.60959 -11.45311 -11.28351 -10.68108 -10.50246 -10.34515 -9.53464 -9.29548 -9.26807 -8.23948 -6.39585 -0.33706 0.87831 1.40476 1.41937 1.44928 1.49883 1.66481 2.11135 2.36792 2.69102 2.77468 3.06363 3.08178 3.29227 3.71169 3.90318 3.97171 4.14601 4.16663 4.25689 4.40345 4.45989 4.49324 4.53098 4.54185 4.59380 4.65273 4.68642 4.76919 4.81414 4.84383 4.88307 5.02715 5.03545 5.11331 5.11925 5.18123 5.30268 5.37764 5.60245 5.65391 5.72501 5.95113 5.99026 6.08195 6.14629 6.55824 6.74277 6.83772 7.00437 7.33038 7.55838 8.80344 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.006906 B = 0.003931 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4053.661893 B = 7121.196540 C =10490.371076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.140 3.860 7 N -0.609 5.609 8 C 0.253 3.747 9 C -0.550 4.550 10 H 0.052 0.948 11 C 0.027 3.973 12 N -0.915 5.915 13 Si 0.953 3.047 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.276 1.276 17 C 0.695 3.305 18 O -0.565 6.565 19 N -0.655 5.655 20 C 0.446 3.554 21 C -0.388 4.388 22 C 0.530 3.470 23 O -0.593 6.593 24 N -0.530 5.530 25 C 0.054 3.946 26 C 0.412 3.588 27 N -0.551 5.551 28 H 0.028 0.972 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.030 0.970 41 H 0.021 0.979 42 H 0.269 0.731 43 H 0.426 0.574 44 H 0.142 0.858 45 H 0.093 0.907 46 H 0.076 0.924 47 H 0.136 0.864 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.224 5.918 -10.439 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.289 5.289 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.153 4.153 6 C 0.017 3.983 7 N -0.343 5.343 8 C 0.132 3.868 9 C -0.589 4.589 10 H 0.071 0.929 11 C -0.174 4.174 12 N -0.553 5.553 13 Si 0.778 3.222 14 H -0.196 1.196 15 H -0.207 1.207 16 H -0.202 1.202 17 C 0.397 3.603 18 O -0.441 6.441 19 N -0.301 5.301 20 C 0.224 3.776 21 C -0.419 4.419 22 C 0.333 3.667 23 O -0.477 6.477 24 N -0.247 5.247 25 C -0.087 4.087 26 C 0.127 3.873 27 N -0.276 5.276 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.267 0.733 44 H 0.160 0.840 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.154 0.846 48 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 12.731 6.162 -11.007 17.922 hybrid contribution -1.655 -1.121 2.080 2.884 sum 11.077 5.041 -8.928 15.093 Atomic orbital electron populations 1.22437 0.87065 1.02170 1.00968 1.61957 1.08609 1.14953 1.43422 1.22422 1.01114 0.87679 1.01050 1.21958 1.00578 0.92213 0.91490 1.21772 1.00561 0.94734 0.98210 1.21234 1.00686 0.78196 0.98222 1.47457 1.21751 1.09102 1.55954 1.19034 0.80795 0.94384 0.92589 1.21636 0.95684 1.42114 0.99430 0.92926 1.25580 0.94656 0.95406 1.01755 1.69984 1.01118 1.45345 1.38900 0.85687 0.77405 0.78743 0.80325 1.19566 1.20714 1.20191 1.16035 0.83797 0.80669 0.79825 1.90909 1.24397 1.75253 1.53539 1.43025 1.23665 1.08371 1.55023 1.18545 0.86955 0.86865 0.85216 1.22179 1.07444 0.92399 1.19857 1.16537 0.81883 0.87904 0.80398 1.90890 1.76759 1.16906 1.63169 1.46818 1.20119 1.11585 1.46191 1.22507 0.92911 0.95831 0.97436 1.26116 0.97824 0.77931 0.85405 1.68520 1.04683 1.35442 1.18962 0.95360 0.90200 0.92228 0.90839 0.90371 0.95263 0.94184 0.89979 0.92813 0.92645 0.90285 0.90643 0.95225 0.96099 0.92221 0.73301 0.84033 0.88885 0.90554 0.84558 0.71687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.32 127.69 1.19 1.67 16 2 N -0.57 -13.57 5.02 -948.88 -4.76 -18.33 16 3 C 0.03 0.46 9.57 127.69 1.22 1.68 16 4 C 0.07 1.68 4.96 86.30 0.43 2.10 16 5 C -0.11 -3.52 5.46 30.60 0.17 -3.35 16 6 C 0.14 4.90 5.41 86.38 0.47 5.36 16 7 N -0.61 -24.92 2.46 -844.21 -2.07 -26.99 16 8 C 0.25 11.63 4.93 85.64 0.42 12.05 16 9 C -0.55 -27.72 9.39 25.60 0.24 -27.48 16 10 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 11 C 0.03 1.40 5.46 84.65 0.46 1.86 16 12 N -0.91 -49.07 13.29 21.45 0.28 -48.79 16 13 Si 0.95 41.44 29.54 68.60 2.03 43.46 16 14 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 17 C 0.70 29.14 8.24 179.05 1.48 30.61 16 18 O -0.57 -24.61 14.17 -3.95 -0.06 -24.67 16 19 N -0.66 -25.90 5.23 -322.20 -1.69 -27.59 16 20 C 0.45 16.08 7.43 132.50 0.98 17.06 16 21 C -0.39 -13.72 9.94 22.80 0.23 -13.49 16 22 C 0.53 17.39 7.42 84.72 0.63 18.02 16 23 O -0.59 -23.10 16.76 -5.49 -0.09 -23.20 16 24 N -0.53 -11.44 2.97 -679.43 -2.02 -13.46 16 25 C 0.05 0.62 10.39 127.77 1.33 1.94 16 26 C 0.41 8.08 11.46 180.35 2.07 10.15 16 27 N -0.55 -17.39 7.94 -196.55 -1.56 -18.95 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 30 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 31 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 32 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 33 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 35 H 0.08 1.96 8.06 -2.39 -0.02 1.94 16 36 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.05 1.80 6.55 -2.39 -0.02 1.79 16 38 H 0.08 2.72 8.07 -2.39 -0.02 2.70 16 39 H 0.08 2.62 7.42 -2.38 -0.02 2.61 16 40 H 0.03 1.43 8.07 -2.38 -0.02 1.41 16 41 H 0.02 1.00 6.36 -2.39 -0.02 0.99 16 42 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.43 17.12 6.43 -92.71 -0.60 16.52 16 44 H 0.14 5.14 8.06 -2.91 -0.02 5.12 16 45 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.08 1.21 7.44 -2.39 -0.02 1.19 16 47 H 0.14 0.25 8.00 -2.38 -0.02 0.23 16 48 H 0.27 1.66 8.01 -2.91 -0.02 1.64 16 Total: -1.00 -73.61 398.17 1.74 -71.87 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.37 Total: 28.45 kcal Atomic # 6 Polarization: 46.88 SS G_CDS: 11.31 Total: 58.19 kcal Atomic # 7 Polarization: -142.30 SS G_CDS: -11.81 Total: -154.11 kcal Atomic # 8 Polarization: -47.71 SS G_CDS: -0.15 Total: -47.86 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.46 kcal Total: -73.61 1.74 -71.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888512257.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.498 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds