Wall clock time and date at job start Tue Mar 31 2020 20:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00127 * 2 1 4 4 N 1.31112 * 125.95832 * 0.02562 * 3 2 1 5 5 N 1.40075 * 108.18656 * 179.97438 * 4 3 2 6 6 C 1.46497 * 125.98995 * 179.97438 * 5 4 3 7 7 C 1.34950 * 108.02208 * 0.24844 * 5 4 3 8 8 C 1.35273 * 107.83039 * 359.60288 * 7 5 4 9 9 C 1.50708 * 126.06561 * 180.12638 * 8 7 5 10 10 N 1.46504 * 109.47103 * 260.31580 * 9 8 7 11 11 C 1.34768 * 119.99697 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00686 * 354.91695 * 11 10 9 13 13 N 1.34785 * 119.99823 * 174.91594 * 11 10 9 14 14 C 1.47080 * 120.87998 * 184.71502 * 13 11 10 15 15 C 1.53691 * 108.27303 * 128.75759 * 14 13 11 16 16 N 1.46902 * 109.26002 * 54.08545 * 15 14 13 17 17 C 1.46894 * 111.00213 * 172.60931 * 16 15 14 18 18 C 1.50701 * 109.46895 * 294.29736 * 17 16 15 19 19 H 1.07991 * 120.00132 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99731 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99829 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00290 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46870 * 90.00144 * 22 20 18 24 24 H 1.48500 * 109.47217 * 210.00167 * 22 20 18 25 25 H 1.48499 * 109.47195 * 330.00303 * 22 20 18 26 26 C 1.46902 * 111.26494 * 296.75477 * 16 15 14 27 27 C 1.47076 * 120.87825 * 4.99933 * 13 11 10 28 28 H 1.09007 * 109.47020 * 300.00496 * 1 2 3 29 29 H 1.09000 * 109.46849 * 59.99768 * 1 2 3 30 30 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47636 * 90.02482 * 6 5 4 32 32 H 1.09004 * 109.47450 * 210.02980 * 6 5 4 33 33 H 1.09004 * 109.46984 * 330.02608 * 6 5 4 34 34 H 1.08003 * 126.08151 * 179.75662 * 7 5 4 35 35 H 1.09001 * 109.46647 * 20.31242 * 9 8 7 36 36 H 1.08994 * 109.46897 * 140.31724 * 9 8 7 37 37 H 0.96996 * 119.99504 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.62844 * 248.52436 * 14 13 11 39 39 H 1.08998 * 109.62746 * 9.10335 * 14 13 11 40 40 H 1.09002 * 109.65391 * 294.07632 * 15 14 13 41 41 H 1.09006 * 109.42187 * 173.95034 * 15 14 13 42 42 H 1.09003 * 109.47555 * 54.29444 * 17 16 15 43 43 H 1.08997 * 109.47448 * 174.30004 * 17 16 15 44 44 H 0.96997 * 120.00386 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.49407 * 303.14494 * 26 16 15 46 46 H 1.08996 * 109.49432 * 183.06440 * 26 16 15 47 47 H 1.09003 * 109.63301 * 350.89001 * 27 13 11 48 48 H 1.09000 * 109.63322 * 111.47812 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 7 1.4503 2.3794 0.0005 5 7 2.4369 3.3738 0.0009 6 6 2.2017 4.8198 0.0009 7 6 3.6419 2.7664 -0.0049 8 6 3.4322 1.4300 0.0000 9 6 4.4981 0.3646 -0.0010 10 7 4.6738 -0.1491 -1.3617 11 6 5.5811 -1.1155 -1.6052 12 8 6.3177 -1.4959 -0.7158 13 7 5.6719 -1.6603 -2.8347 14 6 6.5821 -2.7855 -3.0963 15 6 5.7839 -3.8992 -3.7926 16 7 5.1200 -3.3486 -4.9818 17 6 4.4900 -4.4135 -5.7734 18 6 5.5555 -5.3188 -6.3356 19 1 6.5965 -5.1230 -6.1254 20 6 5.2013 -6.3972 -7.1183 21 7 6.1312 -7.1871 -7.6094 22 14 3.4006 -6.7365 -7.4813 23 1 3.0025 -6.0224 -8.7210 24 1 3.1990 -8.1963 -7.6645 25 1 2.5687 -6.2604 -6.3470 26 6 4.1416 -2.3158 -4.6155 27 6 4.8680 -1.1412 -3.9515 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.1435 5.1785 1.0286 32 1 3.0217 5.3213 -0.5131 33 1 1.2648 5.0355 -0.5128 34 1 4.6028 3.2595 -0.0099 35 1 5.4378 0.7906 0.3507 36 1 4.1986 -0.4495 0.6589 37 1 4.1371 0.2063 -2.0873 38 1 7.3960 -2.4556 -3.7421 39 1 6.9858 -3.1566 -2.1543 40 1 5.0339 -4.2955 -3.1081 41 1 6.4621 -4.6984 -4.0919 42 1 3.8205 -4.9920 -5.1368 43 1 3.9212 -3.9705 -6.5910 44 1 5.8821 -7.9460 -8.1597 45 1 3.4145 -2.7341 -3.9195 46 1 3.6287 -1.9666 -5.5116 47 1 4.1377 -0.4247 -3.5752 48 1 5.5202 -0.6563 -4.6779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898540563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:49 Heat of formation + Delta-G solvation = 47.431026 kcal Electronic energy + Delta-G solvation = -29433.824412 eV Core-core repulsion = 25334.408714 eV Total energy + Delta-G solvation = -4099.415698 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81288 -40.06162 -38.51991 -37.67825 -35.10130 -34.38412 -33.04200 -32.32557 -31.16025 -30.44779 -28.74195 -28.24991 -27.09145 -25.64781 -24.72946 -23.15151 -21.80839 -21.45701 -20.98000 -20.52715 -19.26444 -18.19161 -17.60311 -16.80724 -16.61408 -16.38866 -15.97068 -15.55911 -15.30250 -15.25293 -14.77834 -14.51887 -14.35517 -14.03668 -14.01756 -13.82647 -13.47704 -13.42868 -13.10742 -13.07303 -12.60791 -12.49670 -12.36494 -12.15263 -12.06936 -11.54872 -11.51864 -11.17133 -10.92872 -10.89293 -10.72004 -10.51643 -10.31666 -9.96514 -9.85014 -9.42651 -9.30093 -9.02025 -8.71738 -8.57616 -8.26674 -7.40489 -6.05808 -4.03425 1.37022 1.88017 2.24047 2.96548 3.03028 3.27690 3.35513 3.37299 3.42643 4.02690 4.11814 4.39007 4.41250 4.65279 4.66721 4.71316 4.87473 4.90744 4.95698 4.96914 5.19314 5.21372 5.25064 5.30022 5.38087 5.41035 5.46721 5.66820 5.77349 5.81907 5.84735 5.96158 6.04841 6.15800 6.44119 6.49147 6.56883 6.58791 6.68289 6.86496 6.92136 6.98021 7.16311 7.29450 7.56447 7.84925 7.99936 8.13725 8.63709 8.79278 9.02433 9.55629 11.07108 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.002428 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.528101 B =11527.669118 C =12404.605127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.284 6.284 3 C 0.279 3.721 4 N -0.347 5.347 5 N -0.366 5.366 6 C 0.105 3.895 7 C 0.103 3.897 8 C -0.261 4.261 9 C 0.225 3.775 10 N -0.745 5.745 11 C 0.708 3.292 12 O -0.597 6.597 13 N -0.627 5.627 14 C 0.135 3.865 15 C 0.050 3.950 16 N -0.526 5.526 17 C 0.163 3.837 18 C -0.510 4.510 19 H 0.082 0.918 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C 0.038 3.962 27 C 0.121 3.879 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.185 0.815 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.394 0.606 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.025 0.975 41 H 0.102 0.898 42 H -0.012 1.012 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.028 0.972 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 25.245 16.046 31.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.187 6.187 3 C 0.074 3.926 4 N -0.186 5.186 5 N -0.150 5.150 6 C -0.036 4.036 7 C -0.045 4.045 8 C -0.274 4.274 9 C 0.100 3.900 10 N -0.403 5.403 11 C 0.410 3.590 12 O -0.476 6.476 13 N -0.364 5.364 14 C 0.012 3.988 15 C -0.079 4.079 16 N -0.250 5.250 17 C 0.037 3.963 18 C -0.548 4.548 19 H 0.100 0.900 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.193 1.193 26 C -0.092 4.092 27 C -0.003 4.003 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.202 0.798 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.230 0.770 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.043 0.957 41 H 0.120 0.880 42 H 0.006 0.994 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.707 25.415 16.318 31.725 hybrid contribution -1.557 -0.686 -0.278 1.723 sum -11.264 24.729 16.041 31.555 Atomic orbital electron populations 1.22991 0.77448 1.03787 1.01956 1.86381 1.22178 1.21126 1.89017 1.20486 0.91063 0.85212 0.95815 1.77469 1.13255 0.95009 1.32901 1.47838 1.03136 1.06089 1.57960 1.21899 1.04379 0.73738 1.03561 1.22398 0.91244 0.92148 0.98725 1.19464 0.91809 0.94003 1.22111 1.19115 0.94694 0.93107 0.83042 1.45387 1.42247 1.41853 1.10788 1.15822 0.80892 0.79622 0.82713 1.90883 1.46207 1.65960 1.44589 1.47405 1.45225 1.36183 1.07579 1.21805 0.91465 0.85094 1.00470 1.22500 0.98318 0.96531 0.90574 1.61894 1.29522 1.14190 1.19423 1.20171 0.95015 0.88997 0.92158 1.21018 0.94595 1.08731 1.30483 0.89988 1.24901 0.97058 0.95856 0.95507 1.69891 1.32577 1.16596 1.34715 0.86868 0.86231 0.77586 0.79093 1.20178 1.21208 1.19341 1.22427 0.94016 0.93750 0.98969 1.21705 0.94157 0.95873 0.88596 0.92564 0.92456 0.88053 0.90585 0.89074 0.89191 0.79840 0.91005 0.90985 0.77015 0.91065 0.89197 0.95655 0.87982 0.99393 0.95741 0.92643 0.95426 0.90272 0.91260 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.70 101.05 1.08 1.36 16 2 O -0.28 -3.32 10.57 -19.69 -0.21 -3.53 16 3 C 0.28 3.15 7.84 -17.09 -0.13 3.02 16 4 N -0.35 -3.68 11.97 30.56 0.37 -3.32 16 5 N -0.37 -2.75 4.01 -68.17 -0.27 -3.02 16 6 C 0.11 0.32 11.47 59.85 0.69 1.01 16 7 C 0.10 0.72 11.39 -17.24 -0.20 0.53 16 8 C -0.26 -2.56 5.48 -104.90 -0.58 -3.14 16 9 C 0.23 2.53 6.16 -5.19 -0.03 2.49 16 10 N -0.74 -9.33 5.46 -66.41 -0.36 -9.70 16 11 C 0.71 11.38 8.31 -86.92 -0.72 10.66 16 12 O -0.60 -11.56 15.83 5.29 0.08 -11.48 16 13 N -0.63 -9.87 3.00 -177.91 -0.53 -10.40 16 14 C 0.13 2.29 6.61 -3.37 -0.02 2.27 16 15 C 0.05 0.97 5.47 -3.46 -0.02 0.95 16 16 N -0.53 -10.76 4.62 -235.46 -1.09 -11.85 16 17 C 0.16 3.89 3.79 -4.98 -0.02 3.88 16 18 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 19 H 0.08 2.48 7.37 -52.49 -0.39 2.10 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 22 Si 0.87 21.38 27.47 -169.99 -4.67 16.71 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 26 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 27 C 0.12 1.64 6.59 -3.60 -0.02 1.62 16 28 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.18 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.39 4.37 5.96 -40.82 -0.24 4.12 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.56 7.09 -51.93 -0.37 1.19 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 2.18 6.67 -51.93 -0.35 1.83 16 42 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 43 H 0.02 0.58 7.40 -51.93 -0.38 0.20 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.08 1.20 7.99 -51.93 -0.41 0.79 16 47 H 0.07 0.75 5.63 -51.93 -0.29 0.46 16 48 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -36.36 390.87 -7.90 -44.26 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -7.47 Total: 0.46 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: -0.40 Total: 12.54 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -1.12 Total: -64.86 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.12 Total: -15.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.36 -7.90 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898540563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.691 kcal (2) G-P(sol) polarization free energy of solvation -36.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds