Wall clock time and date at job start Tue Mar 31 2020 20:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35983 * 117.00127 * 2 1 4 4 N 1.31112 * 125.95832 * 0.02562 * 3 2 1 5 5 N 1.40075 * 108.18656 * 179.97438 * 4 3 2 6 6 C 1.46497 * 125.98995 * 179.97438 * 5 4 3 7 7 C 1.34950 * 108.02208 * 0.24844 * 5 4 3 8 8 C 1.35273 * 107.83039 * 359.60288 * 7 5 4 9 9 C 1.50708 * 126.06561 * 180.12638 * 8 7 5 10 10 N 1.46504 * 109.47103 * 260.31580 * 9 8 7 11 11 C 1.34768 * 119.99697 * 179.97438 * 10 9 8 12 12 O 1.21588 * 120.00686 * 354.91695 * 11 10 9 13 13 N 1.34785 * 119.99823 * 174.91594 * 11 10 9 14 14 C 1.47080 * 120.87998 * 184.71502 * 13 11 10 15 15 C 1.53691 * 108.27303 * 128.75759 * 14 13 11 16 16 N 1.46902 * 109.26002 * 54.08545 * 15 14 13 17 17 C 1.46894 * 111.00213 * 172.60931 * 16 15 14 18 18 C 1.50701 * 109.46895 * 294.29736 * 17 16 15 19 19 H 1.07991 * 120.00132 * 0.02562 * 18 17 16 20 20 C 1.37881 * 119.99731 * 180.02562 * 18 17 16 21 21 N 1.31521 * 119.99829 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00290 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.46870 * 90.00144 * 22 20 18 24 24 H 1.48500 * 109.47217 * 210.00167 * 22 20 18 25 25 H 1.48499 * 109.47195 * 330.00303 * 22 20 18 26 26 C 1.46902 * 111.26494 * 296.75477 * 16 15 14 27 27 C 1.47076 * 120.87825 * 4.99933 * 13 11 10 28 28 H 1.09007 * 109.47020 * 300.00496 * 1 2 3 29 29 H 1.09000 * 109.46849 * 59.99768 * 1 2 3 30 30 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47636 * 90.02482 * 6 5 4 32 32 H 1.09004 * 109.47450 * 210.02980 * 6 5 4 33 33 H 1.09004 * 109.46984 * 330.02608 * 6 5 4 34 34 H 1.08003 * 126.08151 * 179.75662 * 7 5 4 35 35 H 1.09001 * 109.46647 * 20.31242 * 9 8 7 36 36 H 1.08994 * 109.46897 * 140.31724 * 9 8 7 37 37 H 0.96996 * 119.99504 * 359.97438 * 10 9 8 38 38 H 1.09004 * 109.62844 * 248.52436 * 14 13 11 39 39 H 1.08998 * 109.62746 * 9.10335 * 14 13 11 40 40 H 1.09002 * 109.65391 * 294.07632 * 15 14 13 41 41 H 1.09006 * 109.42187 * 173.95034 * 15 14 13 42 42 H 1.09003 * 109.47555 * 54.29444 * 17 16 15 43 43 H 1.08997 * 109.47448 * 174.30004 * 17 16 15 44 44 H 0.96997 * 120.00386 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.49407 * 303.14494 * 26 16 15 46 46 H 1.08996 * 109.49432 * 183.06440 * 26 16 15 47 47 H 1.09003 * 109.63301 * 350.89001 * 27 13 11 48 48 H 1.09000 * 109.63322 * 111.47812 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 7 1.4503 2.3794 0.0005 5 7 2.4369 3.3738 0.0009 6 6 2.2017 4.8198 0.0009 7 6 3.6419 2.7664 -0.0049 8 6 3.4322 1.4300 0.0000 9 6 4.4981 0.3646 -0.0010 10 7 4.6738 -0.1491 -1.3617 11 6 5.5811 -1.1155 -1.6052 12 8 6.3177 -1.4959 -0.7158 13 7 5.6719 -1.6603 -2.8347 14 6 6.5821 -2.7855 -3.0963 15 6 5.7839 -3.8992 -3.7926 16 7 5.1200 -3.3486 -4.9818 17 6 4.4900 -4.4135 -5.7734 18 6 5.5555 -5.3188 -6.3356 19 1 6.5965 -5.1230 -6.1254 20 6 5.2013 -6.3972 -7.1183 21 7 6.1312 -7.1871 -7.6094 22 14 3.4006 -6.7365 -7.4813 23 1 3.0025 -6.0224 -8.7210 24 1 3.1990 -8.1963 -7.6645 25 1 2.5687 -6.2604 -6.3470 26 6 4.1416 -2.3158 -4.6155 27 6 4.8680 -1.1412 -3.9515 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 2.1435 5.1785 1.0286 32 1 3.0217 5.3213 -0.5131 33 1 1.2648 5.0355 -0.5128 34 1 4.6028 3.2595 -0.0099 35 1 5.4378 0.7906 0.3507 36 1 4.1986 -0.4495 0.6589 37 1 4.1371 0.2063 -2.0873 38 1 7.3960 -2.4556 -3.7421 39 1 6.9858 -3.1566 -2.1543 40 1 5.0339 -4.2955 -3.1081 41 1 6.4621 -4.6984 -4.0919 42 1 3.8205 -4.9920 -5.1368 43 1 3.9212 -3.9705 -6.5910 44 1 5.8821 -7.9460 -8.1597 45 1 3.4145 -2.7341 -3.9195 46 1 3.6287 -1.9666 -5.5116 47 1 4.1377 -0.4247 -3.5752 48 1 5.5202 -0.6563 -4.6779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898540563.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:47 Heat of formation + Delta-G solvation = 17.381572 kcal Electronic energy + Delta-G solvation = -29435.127454 eV Core-core repulsion = 25334.408714 eV Total energy + Delta-G solvation = -4100.718740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.45702 -41.32457 -39.23100 -39.13102 -36.12960 -35.95187 -34.40050 -33.61270 -32.24176 -31.54451 -30.37977 -28.87867 -27.98467 -27.04384 -25.57862 -24.49515 -23.51752 -22.12481 -22.05008 -21.63577 -20.50381 -19.34182 -18.89629 -18.36511 -17.49382 -17.07858 -16.97358 -16.68705 -16.50050 -16.03200 -16.02408 -15.88725 -15.77899 -15.31452 -15.18069 -15.03282 -14.85474 -14.45075 -14.25193 -13.99680 -13.62909 -13.52733 -13.34500 -13.17133 -13.13205 -12.83349 -12.80120 -12.48377 -12.30557 -12.21434 -12.11536 -11.93136 -11.85524 -11.61995 -11.44923 -11.19559 -10.76408 -10.18561 -10.09538 -9.54887 -9.36375 -9.03623 -8.26609 -6.29914 0.79677 1.35386 1.36447 1.37414 1.42208 1.47441 1.91913 2.17250 2.35363 2.38779 3.03144 3.05743 3.16842 3.51575 3.90400 3.96345 4.06680 4.10950 4.22653 4.26712 4.28226 4.32501 4.40012 4.43437 4.51145 4.54961 4.59209 4.69733 4.72023 4.72929 4.78019 4.83824 4.86824 4.95870 4.98941 5.02995 5.05360 5.13206 5.46411 5.53123 5.55028 5.89029 6.03747 6.05218 6.24487 6.29082 6.62563 6.62907 6.76577 6.99686 7.33417 7.57088 8.89690 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016491 B = 0.002428 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.528101 B =11527.669118 C =12404.605127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.308 6.308 3 C 0.260 3.740 4 N -0.373 5.373 5 N -0.362 5.362 6 C 0.095 3.905 7 C 0.126 3.874 8 C -0.286 4.286 9 C 0.232 3.768 10 N -0.728 5.728 11 C 0.705 3.295 12 O -0.634 6.634 13 N -0.629 5.629 14 C 0.147 3.853 15 C 0.057 3.943 16 N -0.536 5.536 17 C 0.172 3.828 18 C -0.515 4.515 19 H 0.042 0.958 20 C 0.007 3.993 21 N -0.947 5.947 22 Si 0.947 3.053 23 H -0.262 1.262 24 H -0.284 1.284 25 H -0.255 1.255 26 C 0.036 3.964 27 C 0.127 3.873 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.226 0.774 35 H 0.081 0.919 36 H 0.048 0.952 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.017 0.983 41 H 0.072 0.928 42 H -0.018 1.018 43 H 0.036 0.964 44 H 0.266 0.734 45 H 0.024 0.976 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 28.465 16.166 34.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.212 6.212 3 C 0.056 3.944 4 N -0.213 5.213 5 N -0.145 5.145 6 C -0.044 4.044 7 C -0.024 4.024 8 C -0.298 4.298 9 C 0.107 3.893 10 N -0.385 5.385 11 C 0.407 3.593 12 O -0.516 6.516 13 N -0.366 5.366 14 C 0.023 3.977 15 C -0.072 4.072 16 N -0.261 5.261 17 C 0.045 3.955 18 C -0.553 4.553 19 H 0.060 0.940 20 C -0.190 4.190 21 N -0.588 5.588 22 Si 0.770 3.230 23 H -0.187 1.187 24 H -0.210 1.210 25 H -0.179 1.179 26 C -0.093 4.093 27 C 0.004 3.996 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.107 0.893 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.242 0.758 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.241 0.759 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.035 0.965 41 H 0.091 0.909 42 H 0.000 1.000 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.521 28.709 16.443 35.033 hybrid contribution -0.961 -1.566 -0.254 1.855 sum -12.483 27.143 16.189 33.980 Atomic orbital electron populations 1.23108 0.76312 1.04774 1.02042 1.86327 1.23545 1.22092 1.89244 1.20745 0.91756 0.85233 0.96685 1.77407 1.14789 0.95469 1.33642 1.48261 1.02799 1.07111 1.56366 1.22303 1.05786 0.71364 1.04954 1.22944 0.92449 0.91205 0.95762 1.19397 0.90751 0.94832 1.24838 1.19041 0.95645 0.92874 0.81705 1.45334 1.40903 1.40551 1.11756 1.15963 0.81114 0.80047 0.82176 1.90857 1.47803 1.67258 1.45672 1.47397 1.45217 1.35732 1.08270 1.21526 0.91357 0.84969 0.99843 1.22351 0.97702 0.96856 0.90273 1.61811 1.30718 1.13806 1.19750 1.19940 0.93566 0.89313 0.92658 1.21251 0.93993 1.09734 1.30371 0.94004 1.25837 1.02207 0.95584 0.95360 1.70048 1.35245 1.17484 1.35973 0.85722 0.80012 0.77533 0.79687 1.18651 1.21025 1.17862 1.22584 0.93430 0.93221 1.00053 1.21817 0.94626 0.95132 0.88047 0.92400 0.92402 0.86643 0.89271 0.85852 0.89281 0.75799 0.90038 0.93371 0.75943 0.90691 0.89724 0.96516 0.90929 1.00015 0.94604 0.92471 0.95785 0.88363 0.87849 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.70 113.37 1.21 1.75 16 2 O -0.31 -7.14 10.57 -93.36 -0.99 -8.13 16 3 C 0.26 5.62 7.84 85.30 0.67 6.28 16 4 N -0.37 -7.37 11.97 -170.49 -2.04 -9.41 16 5 N -0.36 -4.37 4.01 -369.59 -1.48 -5.85 16 6 C 0.09 0.25 11.47 127.77 1.47 1.71 16 7 C 0.13 1.34 11.39 83.53 0.95 2.29 16 8 C -0.29 -5.08 5.48 -20.05 -0.11 -5.19 16 9 C 0.23 4.91 6.16 85.63 0.53 5.44 16 10 N -0.73 -16.92 5.46 -482.29 -2.63 -19.55 16 11 C 0.71 21.86 8.31 179.05 1.49 23.35 16 12 O -0.63 -24.41 15.83 -3.99 -0.06 -24.47 16 13 N -0.63 -18.98 3.00 -835.04 -2.51 -21.49 16 14 C 0.15 5.03 6.61 86.50 0.57 5.60 16 15 C 0.06 2.30 5.47 86.54 0.47 2.77 16 16 N -0.54 -21.71 4.62 -898.87 -4.15 -25.86 16 17 C 0.17 8.16 3.79 85.56 0.32 8.48 16 18 C -0.52 -29.56 8.96 25.60 0.23 -29.33 16 19 H 0.04 2.67 7.37 -2.92 -0.02 2.65 16 20 C 0.01 0.43 5.47 84.65 0.46 0.90 16 21 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 22 Si 0.95 43.93 27.47 68.60 1.88 45.81 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 26 C 0.04 1.10 5.62 86.38 0.49 1.59 16 27 C 0.13 3.10 6.59 86.35 0.57 3.67 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.12 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.23 0.36 8.06 -2.91 -0.02 0.34 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.40 7.82 5.96 -92.71 -0.55 7.26 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.08 3.00 7.09 -2.39 -0.02 2.98 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 3.30 6.67 -2.38 -0.02 3.28 16 42 H -0.02 -0.86 7.18 -2.39 -0.02 -0.88 16 43 H 0.04 1.63 7.40 -2.39 -0.02 1.61 16 44 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.10 2.66 7.99 -2.39 -0.02 2.64 16 47 H 0.10 1.85 5.63 -2.39 -0.01 1.84 16 48 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -81.93 390.87 -2.00 -83.93 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.36 Total: 14.57 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 9.32 Total: 29.32 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -12.52 Total: -141.03 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -1.05 Total: -32.60 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Total: -81.93 -2.00 -83.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898540563.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.309 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds