Wall clock time and date at job start Tue Mar 31 2020 20:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21309 * 119.99689 * 2 1 4 4 C 1.46778 * 120.00056 * 179.97438 * 2 1 3 5 5 C 1.37981 * 125.91301 * 180.32269 * 4 2 1 6 6 N 1.34709 * 106.64749 * 180.11751 * 5 4 2 7 7 C 1.46505 * 126.52258 * 179.85487 * 6 5 4 8 8 C 1.53509 * 114.17202 * 84.71383 * 7 6 5 9 9 N 1.47481 * 87.93317 * 220.14264 * 8 7 6 10 10 C 1.46900 * 111.00060 * 138.70577 * 9 8 7 11 11 C 1.53002 * 109.47026 * 169.99899 * 10 9 8 12 12 H 1.08996 * 109.47106 * 305.00005 * 11 10 9 13 13 O 1.42905 * 109.46960 * 64.99562 * 11 10 9 14 14 C 1.52991 * 109.47188 * 184.99596 * 11 10 9 15 15 N 1.46897 * 109.47242 * 178.50793 * 14 11 10 16 16 C 1.46898 * 110.99859 * 164.01078 * 15 14 11 17 17 C 1.46900 * 111.00151 * 287.96426 * 15 14 11 18 18 C 1.50696 * 109.47210 * 169.99801 * 17 15 14 19 19 H 1.08000 * 120.00013 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00016 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47012 * 59.99572 * 22 20 18 24 24 H 1.48493 * 109.47308 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47177 * 299.99959 * 22 20 18 26 26 C 1.47480 * 87.83725 * 27.00929 * 9 8 7 27 27 N 1.40157 * 106.95853 * 359.59132 * 6 5 4 28 28 N 1.28714 * 108.67831 * 0.26452 * 27 6 5 29 29 H 1.08997 * 109.47279 * 270.00092 * 1 2 3 30 30 H 1.09001 * 109.47325 * 30.00281 * 1 2 3 31 31 H 1.09005 * 109.46980 * 149.99925 * 1 2 3 32 32 H 1.07999 * 126.67984 * 359.97251 * 5 4 2 33 33 H 1.09004 * 113.25731 * 217.66651 * 7 6 5 34 34 H 1.08994 * 113.47594 * 105.37206 * 8 7 6 35 35 H 1.09003 * 113.52802 * 334.91445 * 8 7 6 36 36 H 1.09001 * 109.46696 * 289.99781 * 10 9 8 37 37 H 1.08992 * 109.47375 * 49.99529 * 10 9 8 38 38 H 0.96699 * 114.00032 * 60.00095 * 13 11 10 39 39 H 1.09004 * 109.47384 * 298.50764 * 14 11 10 40 40 H 1.09006 * 109.47216 * 58.50943 * 14 11 10 41 41 H 1.09000 * 109.47169 * 65.49157 * 16 15 14 42 42 H 1.09011 * 109.47207 * 185.48251 * 16 15 14 43 43 H 1.08995 * 109.47496 * 305.48252 * 16 15 14 44 44 H 1.09000 * 109.47392 * 290.00277 * 17 15 14 45 45 H 1.09004 * 109.46823 * 49.99797 * 17 15 14 46 46 H 0.96997 * 119.99771 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.47447 * 87.75921 * 26 9 8 48 48 H 1.08997 * 113.47806 * 218.22653 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 3.6133 -1.4133 0.0069 6 7 3.8643 -2.7368 0.0024 7 6 5.1834 -3.3741 0.0033 8 6 5.8019 -3.5369 1.3988 9 7 7.1005 -3.1626 0.8084 10 6 7.8418 -2.2579 1.6972 11 6 9.2712 -2.0906 1.1778 12 1 9.7356 -3.0708 1.0700 13 8 9.2431 -1.4347 -0.0914 14 6 10.0787 -1.2499 2.1686 15 7 11.4606 -1.1193 1.6877 16 6 12.1602 -0.0322 2.3852 17 6 12.1884 -2.3878 1.8261 18 6 13.5084 -2.2909 1.1058 19 1 13.7799 -1.3780 0.5965 20 6 14.3697 -3.3675 1.0970 21 7 14.0390 -4.4793 1.7168 22 14 16.0064 -3.2470 0.2047 23 1 16.8121 -2.1478 0.7946 24 1 16.7420 -4.5294 0.3446 25 1 15.7665 -2.9678 -1.2340 26 6 6.3544 -2.4053 -0.2137 27 7 2.6233 -3.3882 0.0027 28 7 1.6916 -2.5001 0.0016 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 4.3442 -0.6182 0.0120 33 1 5.2277 -4.2727 -0.6121 34 1 5.7727 -4.5613 1.7699 35 1 5.4312 -2.8144 2.1260 36 1 7.3478 -1.2865 1.7209 37 1 7.8674 -2.6770 2.7030 38 1 8.8423 -0.5549 -0.0707 39 1 9.6296 -0.2606 2.2564 40 1 10.0780 -1.7371 3.1438 41 1 12.2666 -0.2864 3.4398 42 1 13.1472 0.1069 1.9438 43 1 11.5863 0.8895 2.2897 44 1 12.3648 -2.5921 2.8822 45 1 11.5970 -3.1950 1.3938 46 1 14.6451 -5.2365 1.7110 47 1 6.1307 -1.3805 0.0824 48 1 6.7933 -2.4709 -1.2093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899912053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:59 Heat of formation + Delta-G solvation = 63.980222 kcal Electronic energy + Delta-G solvation = -28741.820834 eV Core-core repulsion = 24643.122763 eV Total energy + Delta-G solvation = -4098.698071 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.70609 -40.70406 -39.33991 -37.81153 -35.54947 -34.30343 -32.51271 -31.76720 -31.31629 -30.02571 -28.36024 -27.29328 -26.67810 -25.52130 -23.97631 -23.75348 -22.78665 -21.67138 -20.58834 -20.24736 -20.02025 -18.09292 -16.85996 -16.55715 -16.42673 -16.22386 -15.85495 -15.70297 -15.63949 -15.12839 -14.92543 -14.75997 -14.57831 -14.31446 -13.83959 -13.66856 -13.39483 -13.25098 -12.84042 -12.73912 -12.58058 -12.48349 -12.46801 -11.98782 -11.94972 -11.61488 -11.44502 -11.40112 -11.20754 -10.96195 -10.82635 -10.68126 -10.66723 -10.39634 -10.37735 -9.84971 -9.73045 -9.68894 -9.34053 -9.17520 -8.42541 -7.26480 -6.02690 -4.03317 0.54717 1.03414 1.49348 2.53332 3.24987 3.33844 3.37761 3.40288 3.41343 3.57014 3.82119 4.03327 4.22654 4.32064 4.43361 4.47226 4.62342 4.66611 4.74524 4.79783 4.88261 4.95062 5.06122 5.11376 5.11844 5.26119 5.29473 5.33254 5.37167 5.41892 5.51163 5.63846 5.66470 5.78022 5.90434 5.94336 6.03245 6.28211 6.31607 6.53765 6.67653 6.97181 7.24274 7.27883 7.57003 7.77454 7.97985 8.06815 8.17107 8.52951 9.03269 9.60501 11.08342 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.001938 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.009919 B =14447.206749 C =15073.605236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.444 3.556 3 O -0.461 6.461 4 C -0.140 4.140 5 C 0.093 3.907 6 N -0.342 5.342 7 C 0.112 3.888 8 C -0.009 4.009 9 N -0.444 5.444 10 C -0.010 4.010 11 C 0.123 3.877 12 H 0.114 0.886 13 O -0.535 6.535 14 C 0.025 3.975 15 N -0.530 5.530 16 C 0.040 3.960 17 C 0.193 3.807 18 C -0.505 4.505 19 H 0.062 0.938 20 C 0.055 3.945 21 N -0.900 5.900 22 Si 0.898 3.102 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.276 1.276 26 C 0.002 3.998 27 N -0.060 5.060 28 N -0.194 5.194 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.202 0.798 33 H 0.151 0.849 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.087 0.913 38 H 0.357 0.643 39 H 0.059 0.941 40 H 0.031 0.969 41 H 0.010 0.990 42 H 0.074 0.926 43 H 0.042 0.958 44 H -0.012 1.012 45 H 0.033 0.967 46 H 0.261 0.739 47 H 0.079 0.921 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.084 6.461 -0.735 25.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.320 3.680 3 O -0.334 6.334 4 C -0.277 4.277 5 C -0.065 4.065 6 N -0.125 5.125 7 C 0.010 3.990 8 C -0.139 4.139 9 N -0.166 5.166 10 C -0.140 4.140 11 C 0.063 3.937 12 H 0.132 0.868 13 O -0.337 6.337 14 C -0.105 4.105 15 N -0.255 5.255 16 C -0.109 4.109 17 C 0.068 3.932 18 C -0.544 4.544 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.726 3.274 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.128 4.128 27 N -0.040 5.040 28 N -0.068 5.068 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.218 0.782 33 H 0.169 0.831 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.201 0.799 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.006 0.994 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -24.550 4.505 -1.557 25.009 hybrid contribution 0.856 1.622 1.132 2.155 sum -23.695 6.127 -0.425 24.478 Atomic orbital electron populations 1.22101 0.92298 1.05231 1.05041 1.21340 0.91701 0.84743 0.70174 1.90600 1.72326 1.33011 1.37466 1.22450 0.91265 0.95077 1.18934 1.23880 0.98079 0.87733 0.96841 1.50589 1.08973 1.05153 1.47807 1.23645 0.75079 0.99390 1.00910 1.24400 0.90128 1.04628 0.94751 1.69006 1.10639 1.28661 1.08305 1.23536 0.97582 0.95165 0.97668 1.21897 0.90392 0.97825 0.83605 0.86825 1.86739 1.84174 1.32840 1.29989 1.22674 0.92983 0.98694 0.96105 1.62045 0.99837 1.08512 1.55060 1.22198 0.99897 0.93206 0.95568 1.19780 0.93348 0.85094 0.94995 1.21099 1.01133 0.99460 1.32714 0.91965 1.24984 0.98616 0.95293 0.95756 1.69941 1.37060 1.03469 1.43450 0.86555 0.83393 0.77067 0.80355 1.20360 1.21382 1.20114 1.24426 0.90652 0.95989 1.01743 1.82027 0.83304 1.16566 1.22135 1.74681 1.24305 0.98577 1.09223 0.88263 0.89266 0.88897 0.78174 0.83117 0.87449 0.90464 0.93263 0.89449 0.79882 0.92295 0.95111 0.97136 0.90718 0.93918 0.99430 0.94942 0.92903 0.90261 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 10.14 36.00 0.37 -0.68 16 2 C 0.44 3.78 7.24 -30.86 -0.22 3.56 16 3 O -0.46 -5.06 17.62 5.53 0.10 -4.96 16 4 C -0.14 -1.28 6.95 -83.29 -0.58 -1.86 16 5 C 0.09 0.73 10.57 -16.38 -0.17 0.56 16 6 N -0.34 -2.87 3.84 -53.95 -0.21 -3.08 16 7 C 0.11 0.80 5.41 -67.71 -0.37 0.43 16 8 C -0.01 -0.07 7.49 -7.54 -0.06 -0.13 16 9 N -0.44 -4.31 6.31 -244.64 -1.54 -5.85 16 10 C -0.01 -0.10 4.53 -3.82 -0.02 -0.12 16 11 C 0.12 1.80 3.23 -26.73 -0.09 1.72 16 12 H 0.11 2.12 6.55 -51.93 -0.34 1.78 16 13 O -0.54 -7.98 12.57 -35.23 -0.44 -8.43 16 14 C 0.03 0.41 4.63 -3.83 -0.02 0.39 16 15 N -0.53 -11.02 4.60 -244.37 -1.12 -12.15 16 16 C 0.04 0.75 9.32 60.06 0.56 1.31 16 17 C 0.19 4.94 4.57 -4.98 -0.02 4.91 16 18 C -0.51 -14.21 8.54 -34.44 -0.29 -14.50 16 19 H 0.06 1.74 7.10 -52.49 -0.37 1.37 16 20 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.00 0.01 6.45 -7.54 -0.05 -0.04 16 27 N -0.06 -0.64 13.76 60.35 0.83 0.19 16 28 N -0.19 -2.02 12.04 32.97 0.40 -1.62 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.48 7.91 -51.93 -0.41 0.07 16 32 H 0.20 1.09 6.83 -52.49 -0.36 0.73 16 33 H 0.15 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.55 7.91 -51.93 -0.41 0.14 16 36 H 0.05 0.40 7.30 -51.93 -0.38 0.02 16 37 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.36 3.86 9.05 45.56 0.41 4.27 16 39 H 0.06 0.79 7.88 -51.93 -0.41 0.38 16 40 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 41 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 42 H 0.07 1.52 6.90 -51.92 -0.36 1.16 16 43 H 0.04 0.67 7.97 -51.93 -0.41 0.25 16 44 H -0.01 -0.33 8.11 -51.93 -0.42 -0.75 16 45 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.08 0.46 5.73 -51.93 -0.30 0.16 16 48 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 398.31 15.07 6.00 6.00 Total: -1.00 -34.15 398.31 -7.93 -42.08 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.60 Total: 0.01 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -1.06 Total: -2.99 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.91 Total: -48.43 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.35 Total: -13.39 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.15 -7.93 -42.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899912053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.059 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds