Wall clock time and date at job start Tue Mar 31 2020 20:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21309 * 119.99689 * 2 1 4 4 C 1.46778 * 120.00056 * 179.97438 * 2 1 3 5 5 C 1.37981 * 125.91301 * 180.32269 * 4 2 1 6 6 N 1.34709 * 106.64749 * 180.11751 * 5 4 2 7 7 C 1.46505 * 126.52258 * 179.85487 * 6 5 4 8 8 C 1.53509 * 114.17202 * 84.71383 * 7 6 5 9 9 N 1.47481 * 87.93317 * 220.14264 * 8 7 6 10 10 C 1.46900 * 111.00060 * 138.70577 * 9 8 7 11 11 C 1.53002 * 109.47026 * 169.99899 * 10 9 8 12 12 H 1.08996 * 109.47106 * 305.00005 * 11 10 9 13 13 O 1.42905 * 109.46960 * 64.99562 * 11 10 9 14 14 C 1.52991 * 109.47188 * 184.99596 * 11 10 9 15 15 N 1.46897 * 109.47242 * 178.50793 * 14 11 10 16 16 C 1.46898 * 110.99859 * 164.01078 * 15 14 11 17 17 C 1.46900 * 111.00151 * 287.96426 * 15 14 11 18 18 C 1.50696 * 109.47210 * 169.99801 * 17 15 14 19 19 H 1.08000 * 120.00013 * 0.02562 * 18 17 15 20 20 C 1.37877 * 120.00016 * 180.02562 * 18 17 15 21 21 N 1.31515 * 119.99956 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47012 * 59.99572 * 22 20 18 24 24 H 1.48493 * 109.47308 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47177 * 299.99959 * 22 20 18 26 26 C 1.47480 * 87.83725 * 27.00929 * 9 8 7 27 27 N 1.40157 * 106.95853 * 359.59132 * 6 5 4 28 28 N 1.28714 * 108.67831 * 0.26452 * 27 6 5 29 29 H 1.08997 * 109.47279 * 270.00092 * 1 2 3 30 30 H 1.09001 * 109.47325 * 30.00281 * 1 2 3 31 31 H 1.09005 * 109.46980 * 149.99925 * 1 2 3 32 32 H 1.07999 * 126.67984 * 359.97251 * 5 4 2 33 33 H 1.09004 * 113.25731 * 217.66651 * 7 6 5 34 34 H 1.08994 * 113.47594 * 105.37206 * 8 7 6 35 35 H 1.09003 * 113.52802 * 334.91445 * 8 7 6 36 36 H 1.09001 * 109.46696 * 289.99781 * 10 9 8 37 37 H 1.08992 * 109.47375 * 49.99529 * 10 9 8 38 38 H 0.96699 * 114.00032 * 60.00095 * 13 11 10 39 39 H 1.09004 * 109.47384 * 298.50764 * 14 11 10 40 40 H 1.09006 * 109.47216 * 58.50943 * 14 11 10 41 41 H 1.09000 * 109.47169 * 65.49157 * 16 15 14 42 42 H 1.09011 * 109.47207 * 185.48251 * 16 15 14 43 43 H 1.08995 * 109.47496 * 305.48252 * 16 15 14 44 44 H 1.09000 * 109.47392 * 290.00277 * 17 15 14 45 45 H 1.09004 * 109.46823 * 49.99797 * 17 15 14 46 46 H 0.96997 * 119.99771 * 180.02562 * 21 20 18 47 47 H 1.08998 * 113.47447 * 87.75921 * 26 9 8 48 48 H 1.08997 * 113.47806 * 218.22653 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2711 0.0006 5 6 3.6133 -1.4133 0.0069 6 7 3.8643 -2.7368 0.0024 7 6 5.1834 -3.3741 0.0033 8 6 5.8019 -3.5369 1.3988 9 7 7.1005 -3.1626 0.8084 10 6 7.8418 -2.2579 1.6972 11 6 9.2712 -2.0906 1.1778 12 1 9.7356 -3.0708 1.0700 13 8 9.2431 -1.4347 -0.0914 14 6 10.0787 -1.2499 2.1686 15 7 11.4606 -1.1193 1.6877 16 6 12.1602 -0.0322 2.3852 17 6 12.1884 -2.3878 1.8261 18 6 13.5084 -2.2909 1.1058 19 1 13.7799 -1.3780 0.5965 20 6 14.3697 -3.3675 1.0970 21 7 14.0390 -4.4793 1.7168 22 14 16.0064 -3.2470 0.2047 23 1 16.8121 -2.1478 0.7946 24 1 16.7420 -4.5294 0.3446 25 1 15.7665 -2.9678 -1.2340 26 6 6.3544 -2.4053 -0.2137 27 7 2.6233 -3.3882 0.0027 28 7 1.6916 -2.5001 0.0016 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 4.3442 -0.6182 0.0120 33 1 5.2277 -4.2727 -0.6121 34 1 5.7727 -4.5613 1.7699 35 1 5.4312 -2.8144 2.1260 36 1 7.3478 -1.2865 1.7209 37 1 7.8674 -2.6770 2.7030 38 1 8.8423 -0.5549 -0.0707 39 1 9.6296 -0.2606 2.2564 40 1 10.0780 -1.7371 3.1438 41 1 12.2666 -0.2864 3.4398 42 1 13.1472 0.1069 1.9438 43 1 11.5863 0.8895 2.2897 44 1 12.3648 -2.5921 2.8822 45 1 11.5970 -3.1950 1.3938 46 1 14.6451 -5.2365 1.7110 47 1 6.1307 -1.3805 0.0824 48 1 6.7933 -2.4709 -1.2093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899912053.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:58 Heat of formation + Delta-G solvation = 34.125131 kcal Electronic energy + Delta-G solvation = -28743.115448 eV Core-core repulsion = 24643.122763 eV Total energy + Delta-G solvation = -4099.992685 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.37433 -41.40066 -40.03027 -39.11723 -36.99510 -35.03585 -34.60313 -32.41333 -32.26390 -30.64159 -29.64564 -29.01865 -27.27172 -26.66381 -25.36420 -24.55285 -23.85871 -22.71115 -21.73100 -21.19952 -20.78664 -18.78653 -18.57637 -17.49428 -17.40814 -17.03120 -16.80570 -16.72644 -16.44705 -16.31769 -16.07328 -15.79020 -15.55560 -15.36490 -15.26789 -14.81260 -14.44106 -14.07251 -13.93101 -13.88233 -13.49676 -13.34991 -13.11247 -13.06809 -13.01213 -12.88563 -12.67383 -12.59531 -12.52900 -12.37995 -12.23367 -12.14755 -12.07805 -11.51238 -11.33492 -11.31731 -11.03516 -10.75580 -10.59772 -10.37849 -10.05726 -8.95486 -8.20207 -6.29443 -0.07287 0.32981 0.86569 1.39886 1.43408 1.51086 1.88226 2.40146 2.61609 2.74680 2.97254 3.12054 3.21360 3.22592 3.48782 3.62953 3.70132 3.78825 3.90322 4.02339 4.06191 4.14493 4.15994 4.32870 4.37850 4.43919 4.49332 4.54559 4.58348 4.65329 4.68378 4.72209 4.76457 4.77979 4.80756 5.03485 5.09074 5.15241 5.21859 5.25527 5.30684 5.32192 5.64499 5.77131 6.07264 6.34426 6.34504 6.65496 6.86277 6.87967 7.08272 7.39795 8.90579 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.001938 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.009919 B =14447.206749 C =15073.605236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.447 3.553 3 O -0.490 6.490 4 C -0.154 4.154 5 C 0.100 3.900 6 N -0.337 5.337 7 C 0.117 3.883 8 C -0.002 4.002 9 N -0.473 5.473 10 C 0.003 3.997 11 C 0.132 3.868 12 H 0.062 0.938 13 O -0.554 6.554 14 C 0.024 3.976 15 N -0.541 5.541 16 C 0.041 3.959 17 C 0.211 3.789 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.008 3.992 27 N -0.089 5.089 28 N -0.205 5.205 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.228 0.772 33 H 0.153 0.847 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.377 0.623 39 H 0.099 0.901 40 H 0.026 0.974 41 H 0.007 0.993 42 H 0.053 0.947 43 H 0.084 0.916 44 H -0.043 1.043 45 H 0.006 0.994 46 H 0.264 0.736 47 H 0.103 0.897 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.950 8.402 -0.993 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.326 3.674 3 O -0.364 6.364 4 C -0.291 4.291 5 C -0.058 4.058 6 N -0.120 5.120 7 C 0.016 3.984 8 C -0.132 4.132 9 N -0.196 5.196 10 C -0.126 4.126 11 C 0.071 3.929 12 H 0.080 0.920 13 O -0.359 6.359 14 C -0.105 4.105 15 N -0.265 5.265 16 C -0.107 4.107 17 C 0.084 3.916 18 C -0.562 4.562 19 H 0.079 0.921 20 C -0.198 4.198 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.208 1.208 25 H -0.195 1.195 26 C -0.122 4.122 27 N -0.069 5.069 28 N -0.078 5.078 29 H 0.132 0.868 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.170 0.830 34 H 0.124 0.876 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.117 0.883 40 H 0.044 0.956 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.102 0.898 44 H -0.025 1.025 45 H 0.024 0.976 46 H 0.072 0.928 47 H 0.121 0.879 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.447 6.452 -1.813 26.315 hybrid contribution 1.078 1.050 1.207 1.929 sum -24.369 7.502 -0.606 25.505 Atomic orbital electron populations 1.22132 0.90141 1.05884 1.06137 1.21706 0.92829 0.84007 0.68907 1.90589 1.73045 1.33692 1.39120 1.22728 0.92031 0.95037 1.19336 1.24334 0.98247 0.87915 0.95348 1.50619 1.08706 1.05356 1.47273 1.23612 0.74544 0.99491 1.00787 1.24375 0.88869 1.04906 0.95038 1.68946 1.11939 1.29492 1.09220 1.23318 0.94920 0.97046 0.97330 1.21586 0.92728 0.95120 0.83443 0.92006 1.86690 1.84774 1.34399 1.30047 1.22831 0.90460 1.01156 0.96022 1.61938 1.01777 1.06509 1.56305 1.22217 0.99550 0.94113 0.94825 1.19366 0.92829 0.87006 0.92378 1.21458 1.02393 0.99476 1.32857 0.92134 1.25911 1.02526 0.94870 0.96504 1.70073 1.38480 1.04206 1.44716 0.85463 0.78750 0.77452 0.79117 1.19146 1.20831 1.19513 1.24458 0.89869 0.96972 1.00889 1.81996 0.84125 1.17196 1.23545 1.74654 1.24683 0.99079 1.09432 0.86790 0.88230 0.88581 0.75593 0.82977 0.87571 0.89346 0.89968 0.89410 0.77554 0.88293 0.95585 0.97464 0.92848 0.89769 1.02545 0.97625 0.92768 0.87923 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.74 10.14 71.24 0.72 -1.02 16 2 C 0.45 6.96 7.24 27.92 0.20 7.16 16 3 O -0.49 -10.01 17.62 -3.12 -0.05 -10.07 16 4 C -0.15 -2.58 6.95 40.89 0.28 -2.30 16 5 C 0.10 1.35 10.57 84.19 0.89 2.24 16 6 N -0.34 -5.07 3.84 -324.59 -1.25 -6.32 16 7 C 0.12 1.49 5.41 45.45 0.25 1.74 16 8 C 0.00 -0.03 7.49 83.58 0.63 0.59 16 9 N -0.47 -8.54 6.31 -927.92 -5.85 -14.39 16 10 C 0.00 0.06 4.53 86.30 0.39 0.45 16 11 C 0.13 3.80 3.23 30.59 0.10 3.89 16 12 H 0.06 2.44 6.55 -2.39 -0.02 2.43 16 13 O -0.55 -15.78 12.57 -148.98 -1.87 -17.66 16 14 C 0.02 0.75 4.63 86.30 0.40 1.15 16 15 N -0.54 -22.43 4.60 -927.06 -4.27 -26.69 16 16 C 0.04 1.51 9.32 127.69 1.19 2.70 16 17 C 0.21 11.21 4.57 85.56 0.39 11.60 16 18 C -0.52 -30.10 8.54 25.60 0.22 -29.88 16 19 H 0.06 3.42 7.10 -2.91 -0.02 3.40 16 20 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 21 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 22 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.01 0.10 6.45 83.58 0.54 0.64 16 27 N -0.09 -1.82 13.76 37.02 0.51 -1.31 16 28 N -0.20 -4.09 12.04 -49.61 -0.60 -4.68 16 29 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.85 7.91 -2.38 -0.02 0.83 16 32 H 0.23 1.67 6.83 -2.91 -0.02 1.65 16 33 H 0.15 1.90 8.14 -2.38 -0.02 1.88 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.01 7.91 -2.39 -0.02 0.99 16 36 H 0.08 0.99 7.30 -2.39 -0.02 0.97 16 37 H 0.09 1.63 8.08 -2.39 -0.02 1.61 16 38 H 0.38 7.02 9.05 -74.06 -0.67 6.35 16 39 H 0.10 2.26 7.88 -2.38 -0.02 2.24 16 40 H 0.03 0.83 8.05 -2.38 -0.02 0.81 16 41 H 0.01 0.25 8.13 -2.39 -0.02 0.23 16 42 H 0.05 2.15 6.90 -2.38 -0.02 2.14 16 43 H 0.08 2.37 7.97 -2.39 -0.02 2.35 16 44 H -0.04 -2.50 8.11 -2.39 -0.02 -2.52 16 45 H 0.01 0.33 6.38 -2.38 -0.02 0.32 16 46 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 47 H 0.10 0.79 5.73 -2.39 -0.01 0.78 16 48 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -76.71 398.31 -4.10 -80.81 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.31 Total: 10.56 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 6.66 Total: -0.60 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -11.17 Total: -109.95 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -1.93 Total: -27.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -76.71 -4.10 -80.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899912053.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.931 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds