Wall clock time and date at job start Tue Mar 31 2020 20:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47055 * 125.40886 * 2 1 4 4 C 1.54101 * 103.86181 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.54398 * 241.25589 * 4 3 2 6 6 C 1.50695 * 110.55289 * 118.59108 * 4 3 2 7 7 O 1.21276 * 119.99989 * 261.99715 * 6 4 3 8 8 N 1.34779 * 119.99833 * 81.99879 * 6 4 3 9 9 C 1.47079 * 120.88384 * 359.71767 * 8 6 4 10 10 C 1.53242 * 108.51876 * 129.08866 * 9 8 6 11 11 N 1.46905 * 109.34006 * 53.83419 * 10 9 8 12 12 C 1.46896 * 110.99865 * 172.74299 * 11 10 9 13 13 C 1.53941 * 113.74305 * 43.04397 * 12 11 10 14 14 N 1.47808 * 86.03611 * 222.08192 * 13 12 11 15 15 C 1.36945 * 134.45590 * 204.64350 * 14 13 12 16 16 H 1.08001 * 119.99627 * 173.35050 * 15 14 13 17 17 C 1.38808 * 119.99975 * 353.34812 * 15 14 13 18 18 N 1.31620 * 120.00027 * 5.06170 * 17 15 14 19 19 Si 1.86800 * 120.00133 * 185.06480 * 17 15 14 20 20 H 1.48497 * 109.47258 * 94.98291 * 19 17 15 21 21 H 1.48498 * 109.47075 * 214.98713 * 19 17 15 22 22 H 1.48504 * 109.46682 * 334.98486 * 19 17 15 23 23 C 1.47582 * 91.05267 * 24.54885 * 14 13 12 24 24 C 1.46902 * 111.26573 * 296.89568 * 11 10 9 25 25 C 1.47087 * 120.87816 * 180.02562 * 8 6 4 26 26 N 1.47050 * 103.99314 * 359.91939 * 4 3 2 27 27 C 1.33948 * 125.41149 * 179.97438 * 2 1 3 28 28 O 1.21586 * 123.03991 * 0.02562 * 27 2 1 29 29 H 1.08994 * 109.47335 * 90.00499 * 1 2 3 30 30 H 1.08998 * 109.46672 * 210.00661 * 1 2 3 31 31 H 1.09001 * 109.47227 * 330.00241 * 1 2 3 32 32 H 1.08996 * 110.55333 * 61.40283 * 3 2 1 33 33 H 1.09007 * 110.66764 * 298.64793 * 3 2 1 34 34 H 1.09002 * 109.62880 * 248.79940 * 9 8 6 35 35 H 1.08998 * 109.62342 * 9.38469 * 9 8 6 36 36 H 1.08999 * 109.49260 * 293.87311 * 10 9 8 37 37 H 1.08996 * 109.48964 * 173.78816 * 10 9 8 38 38 H 1.09001 * 112.93888 * 174.63391 * 12 11 10 39 39 H 1.09006 * 113.76847 * 336.34719 * 13 12 11 40 40 H 1.09006 * 113.77191 * 107.74375 * 13 12 11 41 41 H 0.97001 * 119.99882 * 179.97438 * 18 17 15 42 42 H 1.08991 * 113.76791 * 221.15385 * 23 14 13 43 43 H 1.08997 * 113.76778 * 89.75454 * 23 14 13 44 44 H 1.08998 * 109.48982 * 303.14136 * 24 11 10 45 45 H 1.08999 * 109.49122 * 183.06599 * 24 11 10 46 46 H 1.09006 * 109.62776 * 350.61586 * 25 8 6 47 47 H 1.08995 * 109.63119 * 111.19695 * 25 8 6 48 48 H 0.96999 * 125.41249 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9484 0.8942 6 6 4.4900 1.0667 -1.2398 7 8 4.5704 0.3189 -2.1912 8 7 5.0622 2.2859 -1.2906 9 6 4.9715 3.2106 -0.1505 10 6 6.3812 3.7084 0.1858 11 7 6.9997 4.2707 -1.0222 12 6 8.2822 4.9136 -0.7065 13 6 9.1596 4.1028 0.2644 14 7 9.4506 5.3956 0.9191 15 6 10.4798 5.8717 1.6869 16 1 10.5078 6.9148 1.9657 17 6 11.4870 5.0137 2.1067 18 7 11.5072 3.7668 1.6857 19 14 12.8136 5.6287 3.2691 20 1 12.4373 5.3005 4.6676 21 1 14.1047 4.9744 2.9373 22 1 12.9533 7.1003 3.1265 23 6 8.1884 5.9678 0.4115 24 6 7.1661 3.2462 -2.0618 25 6 5.7882 2.7296 -2.4904 26 7 3.5571 -0.8251 0.0010 27 6 2.2412 -1.0917 0.0005 28 8 1.7946 -2.2226 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 2.1406 1.7935 0.8961 33 1 2.1414 1.7954 -0.8951 34 1 4.3376 4.0570 -0.4150 35 1 4.5519 2.6902 0.7104 36 1 6.9838 2.8760 0.5492 37 1 6.3212 4.4779 0.9555 38 1 8.8134 5.2601 -1.5930 39 1 8.5973 3.4100 0.8905 40 1 10.0278 3.6428 -0.2076 41 1 12.2113 3.1674 1.9788 42 1 8.2827 6.9940 0.0566 43 1 7.3404 5.8240 1.0809 44 1 7.7578 2.4203 -1.6670 45 1 7.6754 3.6804 -2.9221 46 1 5.9086 1.8912 -3.1766 47 1 5.2328 3.5298 -2.9795 48 1 4.2669 -1.4863 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941515634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:05 Heat of formation + Delta-G solvation = 47.653289 kcal Electronic energy + Delta-G solvation = -30173.300333 eV Core-core repulsion = 26073.894274 eV Total energy + Delta-G solvation = -4099.406060 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70987 -40.13372 -38.91681 -36.81001 -36.43582 -34.41796 -33.94122 -32.05075 -31.34297 -29.80725 -28.22615 -27.49527 -26.28505 -24.98360 -24.29633 -23.77882 -22.65743 -21.36107 -20.86783 -19.65211 -18.68666 -18.08612 -17.57871 -16.92825 -16.65748 -16.46848 -15.65647 -15.46410 -15.39802 -15.07439 -14.91234 -14.58655 -14.51817 -14.20315 -14.05080 -13.78049 -13.76275 -13.36347 -12.89486 -12.76364 -12.51582 -12.39968 -12.27641 -12.13758 -11.94754 -11.71663 -11.30021 -11.08628 -10.93057 -10.80162 -10.63334 -10.55702 -10.39172 -10.24686 -9.97570 -9.57202 -9.49704 -8.94929 -8.93724 -8.83674 -7.94532 -6.93150 -5.85979 -3.18060 2.05840 2.34823 2.52075 2.95052 3.33386 3.38671 3.41019 3.51304 3.85301 3.96396 4.02132 4.36358 4.42376 4.56891 4.77167 4.85291 4.89103 4.93344 5.07812 5.13564 5.17359 5.21037 5.27178 5.33418 5.38793 5.41803 5.54385 5.55562 5.60747 5.73793 5.88232 5.99214 6.04263 6.21393 6.24484 6.29220 6.46003 6.54375 6.78758 6.88270 7.08996 7.10550 7.14407 7.26541 7.43181 7.52096 7.82558 7.89358 8.30026 8.95900 9.62666 10.50989 11.31179 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002421 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.417851 B =11561.927221 C =12039.554970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.102 3.898 5 H 0.119 0.881 6 C 0.505 3.495 7 O -0.527 6.527 8 N -0.605 5.605 9 C 0.107 3.893 10 C 0.032 3.968 11 N -0.528 5.528 12 C 0.034 3.966 13 C 0.136 3.864 14 N -0.609 5.609 15 C -0.224 4.224 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.125 3.875 24 C 0.042 3.958 25 C 0.118 3.882 26 N -0.715 5.715 27 C 0.705 3.295 28 O -0.582 6.582 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.254 0.746 42 H 0.046 0.954 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.076 0.924 48 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.119 -1.289 -4.578 20.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.377 5.377 3 C -0.016 4.016 4 C -0.009 4.009 5 H 0.136 0.864 6 C 0.290 3.710 7 O -0.402 6.402 8 N -0.339 5.339 9 C -0.016 4.016 10 C -0.096 4.096 11 N -0.253 5.253 12 C -0.074 4.074 13 C 0.009 3.991 14 N -0.336 5.336 15 C -0.352 4.352 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.002 4.002 24 C -0.087 4.087 25 C -0.004 4.004 26 N -0.377 5.377 27 C 0.406 3.594 28 O -0.459 6.459 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.094 0.906 48 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.506 -1.932 -5.109 21.221 hybrid contribution 1.861 -0.374 1.126 2.207 sum -18.645 -2.306 -3.983 19.205 Atomic orbital electron populations 1.21405 0.75240 1.03303 1.02039 1.46994 1.06456 1.05518 1.78733 1.22269 0.86137 0.89100 1.04116 1.21888 0.97219 0.83495 0.98258 0.86377 1.20667 0.79677 0.81565 0.89124 1.90741 1.59636 1.52507 1.37322 1.48222 1.53441 1.14832 1.17390 1.22070 0.98540 0.93035 0.87909 1.22619 0.93415 0.99847 0.93764 1.62032 1.25389 1.29046 1.08818 1.24321 0.87650 0.97366 0.98095 1.22854 0.95739 0.89831 0.90658 1.45802 1.16891 1.10150 1.60729 1.19007 0.98538 0.93653 1.23970 0.90114 1.24827 0.99317 0.95677 1.00509 1.69836 1.34768 1.04904 1.47109 0.86130 0.81057 0.77901 0.80889 1.21595 1.21687 1.20476 1.22694 0.89557 0.95975 0.91944 1.22402 0.95674 0.94308 0.96302 1.21794 0.92039 0.99869 0.86703 1.44926 1.06962 1.06095 1.79726 1.15869 0.81623 0.84612 0.77333 1.90964 1.75813 1.20908 1.58237 0.92595 0.90265 0.90715 0.88574 0.89574 0.89949 0.89797 0.93287 0.88571 0.88146 0.95211 0.91721 0.93631 0.93626 0.94513 0.94026 0.89513 0.88946 0.90583 0.72224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.81 11.03 59.85 0.66 1.46 16 2 N -0.64 -5.96 3.36 -186.64 -0.63 -6.58 16 3 C 0.11 0.71 7.11 -3.16 -0.02 0.68 16 4 C 0.10 0.85 3.17 -68.21 -0.22 0.64 16 5 H 0.12 0.72 6.62 -51.93 -0.34 0.38 16 6 C 0.50 5.57 6.82 -10.99 -0.07 5.49 16 7 O -0.53 -7.95 16.03 5.56 0.09 -7.86 16 8 N -0.60 -5.97 3.01 -172.44 -0.52 -6.49 16 9 C 0.11 0.86 6.42 -3.60 -0.02 0.84 16 10 C 0.03 0.38 4.63 -3.70 -0.02 0.36 16 11 N -0.53 -6.96 4.77 -228.23 -1.09 -8.05 16 12 C 0.03 0.58 4.05 -69.93 -0.28 0.30 16 13 C 0.14 2.97 6.72 -2.84 -0.02 2.95 16 14 N -0.61 -14.79 3.70 -177.90 -0.66 -15.45 16 15 C -0.22 -6.07 10.70 -15.06 -0.16 -6.24 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.70 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.67 11.51 55.49 0.64 -26.03 16 19 Si 0.91 21.61 29.56 -169.99 -5.02 16.59 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C 0.12 2.33 8.41 -2.97 -0.02 2.30 16 24 C 0.04 0.51 5.55 -3.68 -0.02 0.49 16 25 C 0.12 1.24 6.60 -3.58 -0.02 1.22 16 26 N -0.72 -7.80 5.64 -59.25 -0.33 -8.13 16 27 C 0.71 9.09 8.61 -88.12 -0.76 8.33 16 28 O -0.58 -9.78 17.53 5.29 0.09 -9.69 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.59 7.91 -51.93 -0.41 0.18 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.53 7.72 -51.93 -0.40 0.13 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.45 5.52 -51.93 -0.29 0.16 16 36 H 0.05 0.69 6.38 -51.93 -0.33 0.36 16 37 H 0.10 1.18 5.81 -51.93 -0.30 0.88 16 38 H 0.10 1.72 8.11 -51.93 -0.42 1.30 16 39 H 0.03 0.67 5.76 -51.93 -0.30 0.37 16 40 H 0.06 1.62 7.37 -51.93 -0.38 1.24 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.65 5.93 -51.93 -0.31 0.34 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 46 H 0.09 1.06 7.06 -51.93 -0.37 0.69 16 47 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.43 4.54 8.96 -40.82 -0.37 4.17 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -36.56 376.12 -9.99 -46.55 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.14 Total: 0.92 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: -1.08 Total: 18.56 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: -2.59 Total: -70.73 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.18 Total: -17.55 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.56 -9.99 -46.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941515634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.200 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds