Wall clock time and date at job start Tue Mar 31 2020 20:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47055 * 125.40886 * 2 1 4 4 C 1.54101 * 103.86181 * 180.02562 * 3 2 1 5 5 H 1.09005 * 110.54398 * 241.25589 * 4 3 2 6 6 C 1.50695 * 110.55289 * 118.59108 * 4 3 2 7 7 O 1.21276 * 119.99989 * 261.99715 * 6 4 3 8 8 N 1.34779 * 119.99833 * 81.99879 * 6 4 3 9 9 C 1.47079 * 120.88384 * 359.71767 * 8 6 4 10 10 C 1.53242 * 108.51876 * 129.08866 * 9 8 6 11 11 N 1.46905 * 109.34006 * 53.83419 * 10 9 8 12 12 C 1.46896 * 110.99865 * 172.74299 * 11 10 9 13 13 C 1.53941 * 113.74305 * 43.04397 * 12 11 10 14 14 N 1.47808 * 86.03611 * 222.08192 * 13 12 11 15 15 C 1.36945 * 134.45590 * 204.64350 * 14 13 12 16 16 H 1.08001 * 119.99627 * 173.35050 * 15 14 13 17 17 C 1.38808 * 119.99975 * 353.34812 * 15 14 13 18 18 N 1.31620 * 120.00027 * 5.06170 * 17 15 14 19 19 Si 1.86800 * 120.00133 * 185.06480 * 17 15 14 20 20 H 1.48497 * 109.47258 * 94.98291 * 19 17 15 21 21 H 1.48498 * 109.47075 * 214.98713 * 19 17 15 22 22 H 1.48504 * 109.46682 * 334.98486 * 19 17 15 23 23 C 1.47582 * 91.05267 * 24.54885 * 14 13 12 24 24 C 1.46902 * 111.26573 * 296.89568 * 11 10 9 25 25 C 1.47087 * 120.87816 * 180.02562 * 8 6 4 26 26 N 1.47050 * 103.99314 * 359.91939 * 4 3 2 27 27 C 1.33948 * 125.41149 * 179.97438 * 2 1 3 28 28 O 1.21586 * 123.03991 * 0.02562 * 27 2 1 29 29 H 1.08994 * 109.47335 * 90.00499 * 1 2 3 30 30 H 1.08998 * 109.46672 * 210.00661 * 1 2 3 31 31 H 1.09001 * 109.47227 * 330.00241 * 1 2 3 32 32 H 1.08996 * 110.55333 * 61.40283 * 3 2 1 33 33 H 1.09007 * 110.66764 * 298.64793 * 3 2 1 34 34 H 1.09002 * 109.62880 * 248.79940 * 9 8 6 35 35 H 1.08998 * 109.62342 * 9.38469 * 9 8 6 36 36 H 1.08999 * 109.49260 * 293.87311 * 10 9 8 37 37 H 1.08996 * 109.48964 * 173.78816 * 10 9 8 38 38 H 1.09001 * 112.93888 * 174.63391 * 12 11 10 39 39 H 1.09006 * 113.76847 * 336.34719 * 13 12 11 40 40 H 1.09006 * 113.77191 * 107.74375 * 13 12 11 41 41 H 0.97001 * 119.99882 * 179.97438 * 18 17 15 42 42 H 1.08991 * 113.76791 * 221.15385 * 23 14 13 43 43 H 1.08997 * 113.76778 * 89.75454 * 23 14 13 44 44 H 1.08998 * 109.48982 * 303.14136 * 24 11 10 45 45 H 1.08999 * 109.49122 * 183.06599 * 24 11 10 46 46 H 1.09006 * 109.62776 * 350.61586 * 25 8 6 47 47 H 1.08995 * 109.63119 * 111.19695 * 25 8 6 48 48 H 0.96999 * 125.41249 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3171 1.1986 0.0000 4 6 3.7504 0.6326 -0.0007 5 1 4.2868 0.9484 0.8942 6 6 4.4900 1.0667 -1.2398 7 8 4.5704 0.3189 -2.1912 8 7 5.0622 2.2859 -1.2906 9 6 4.9715 3.2106 -0.1505 10 6 6.3812 3.7084 0.1858 11 7 6.9997 4.2707 -1.0222 12 6 8.2822 4.9136 -0.7065 13 6 9.1596 4.1028 0.2644 14 7 9.4506 5.3956 0.9191 15 6 10.4798 5.8717 1.6869 16 1 10.5078 6.9148 1.9657 17 6 11.4870 5.0137 2.1067 18 7 11.5072 3.7668 1.6857 19 14 12.8136 5.6287 3.2691 20 1 12.4373 5.3005 4.6676 21 1 14.1047 4.9744 2.9373 22 1 12.9533 7.1003 3.1265 23 6 8.1884 5.9678 0.4115 24 6 7.1661 3.2462 -2.0618 25 6 5.7882 2.7296 -2.4904 26 7 3.5571 -0.8251 0.0010 27 6 2.2412 -1.0917 0.0005 28 8 1.7946 -2.2226 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3632 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 2.1406 1.7935 0.8961 33 1 2.1414 1.7954 -0.8951 34 1 4.3376 4.0570 -0.4150 35 1 4.5519 2.6902 0.7104 36 1 6.9838 2.8760 0.5492 37 1 6.3212 4.4779 0.9555 38 1 8.8134 5.2601 -1.5930 39 1 8.5973 3.4100 0.8905 40 1 10.0278 3.6428 -0.2076 41 1 12.2113 3.1674 1.9788 42 1 8.2827 6.9940 0.0566 43 1 7.3404 5.8240 1.0809 44 1 7.7578 2.4203 -1.6670 45 1 7.6754 3.6804 -2.9221 46 1 5.9086 1.8912 -3.1766 47 1 5.2328 3.5298 -2.9795 48 1 4.2669 -1.4863 0.0015 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941515634.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:04 Heat of formation + Delta-G solvation = 17.640376 kcal Electronic energy + Delta-G solvation = -30174.601791 eV Core-core repulsion = 26073.894274 eV Total energy + Delta-G solvation = -4100.707517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.50413 -41.17141 -40.14998 -37.99450 -37.39849 -35.22858 -35.11711 -33.82592 -32.31080 -30.61184 -29.62246 -28.33817 -27.49561 -26.61328 -25.13340 -24.73061 -24.16945 -22.41284 -21.64898 -20.77053 -19.84228 -18.88927 -18.72464 -18.47367 -17.52701 -17.40344 -16.92997 -16.69853 -16.41027 -16.27929 -16.07654 -15.66453 -15.53061 -15.23795 -15.18509 -14.79050 -14.52472 -14.40248 -13.92986 -13.80442 -13.51386 -13.39044 -13.32907 -13.21784 -13.12753 -12.94852 -12.79720 -12.65383 -12.23752 -12.15486 -12.05481 -11.82709 -11.73666 -11.55324 -11.33640 -11.31458 -10.85132 -10.39578 -9.82176 -9.59457 -9.22178 -8.83610 -7.92750 -5.25206 1.27696 1.44850 1.45756 1.54962 1.57801 1.74216 2.06400 2.44931 2.83688 2.87866 3.23123 3.27377 3.28294 3.50554 3.80510 3.87422 3.90328 4.03580 4.08322 4.18777 4.30203 4.40060 4.46948 4.50222 4.53039 4.56305 4.68411 4.72147 4.76599 4.82343 4.88095 4.93063 4.97875 5.00192 5.05804 5.15812 5.23624 5.40380 5.41572 5.50491 5.60952 5.90634 5.96721 6.08135 6.16340 6.29543 6.36721 6.90246 6.99522 7.40790 7.60263 8.55794 9.23898 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.019090 B = 0.002421 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.417851 B =11561.927221 C =12039.554970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.635 5.635 3 C 0.108 3.892 4 C 0.102 3.898 5 H 0.150 0.850 6 C 0.504 3.496 7 O -0.575 6.575 8 N -0.602 5.602 9 C 0.114 3.886 10 C 0.028 3.972 11 N -0.512 5.512 12 C 0.064 3.936 13 C 0.137 3.863 14 N -0.642 5.642 15 C -0.229 4.229 16 H 0.087 0.913 17 C -0.069 4.069 18 N -0.955 5.955 19 Si 0.975 3.025 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.130 3.870 24 C 0.044 3.956 25 C 0.125 3.875 26 N -0.720 5.720 27 C 0.691 3.309 28 O -0.635 6.635 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.022 0.978 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.023 0.977 40 H 0.020 0.980 41 H 0.246 0.754 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.015 0.985 45 H 0.095 0.905 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 1.501 -3.878 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.374 5.374 3 C -0.015 4.015 4 C -0.007 4.007 5 H 0.167 0.833 6 C 0.291 3.709 7 O -0.454 6.454 8 N -0.335 5.335 9 C -0.008 4.008 10 C -0.100 4.100 11 N -0.236 5.236 12 C -0.045 4.045 13 C 0.009 3.991 14 N -0.369 5.369 15 C -0.357 4.357 16 H 0.104 0.896 17 C -0.262 4.262 18 N -0.604 5.604 19 Si 0.803 3.197 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.189 1.189 23 C 0.005 3.995 24 C -0.084 4.084 25 C 0.002 3.998 26 N -0.380 5.380 27 C 0.392 3.608 28 O -0.517 6.517 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.040 0.960 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.033 0.967 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.115 0.885 48 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -22.858 0.959 -4.406 23.299 hybrid contribution 2.559 -1.196 0.857 2.951 sum -20.300 -0.237 -3.549 20.609 Atomic orbital electron populations 1.21627 0.73834 1.04512 1.02535 1.47203 1.07396 1.05402 1.77374 1.22625 0.83823 0.88140 1.06872 1.22172 0.98790 0.81994 0.97752 0.83325 1.21154 0.79300 0.81134 0.89334 1.90730 1.61579 1.53808 1.39276 1.48299 1.52638 1.14869 1.17645 1.22256 0.96179 0.93909 0.88463 1.22710 0.95297 0.98913 0.93085 1.62098 1.22465 1.29450 1.09586 1.23842 0.88363 0.95519 0.96801 1.22777 0.95044 0.89496 0.91752 1.46190 1.18474 1.11602 1.60623 1.19419 0.99234 0.94020 1.23067 0.89551 1.25638 1.01928 0.96034 1.02584 1.70034 1.35505 1.06094 1.48749 0.85106 0.77951 0.77996 0.78622 1.21484 1.22552 1.18875 1.22856 0.87785 0.96709 0.92160 1.22427 0.96772 0.93145 0.96091 1.21687 0.91176 0.99915 0.86993 1.45009 1.06423 1.07487 1.79041 1.16248 0.82391 0.84819 0.77381 1.90909 1.76816 1.23223 1.60712 0.92493 0.91769 0.86784 0.83953 0.88557 0.87067 0.86312 0.96019 0.88400 0.88164 0.95941 0.96132 0.94518 0.92438 0.92182 0.96702 0.88650 0.90197 0.88458 0.72607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.27 11.03 127.77 1.41 2.68 16 2 N -0.64 -10.37 3.36 -863.13 -2.90 -13.27 16 3 C 0.11 0.94 7.11 86.65 0.62 1.55 16 4 C 0.10 1.42 3.17 44.51 0.14 1.56 16 5 H 0.15 1.16 6.62 -2.38 -0.02 1.14 16 6 C 0.50 10.11 6.82 87.66 0.60 10.71 16 7 O -0.57 -17.20 16.03 -3.02 -0.05 -17.25 16 8 N -0.60 -10.15 3.01 -817.86 -2.46 -12.61 16 9 C 0.11 1.30 6.42 86.35 0.55 1.85 16 10 C 0.03 0.60 4.63 86.38 0.40 1.00 16 11 N -0.51 -12.37 4.77 -875.97 -4.18 -16.55 16 12 C 0.06 2.11 4.05 46.67 0.19 2.30 16 13 C 0.14 6.10 6.72 86.44 0.58 6.68 16 14 N -0.64 -31.11 3.70 -716.75 -2.65 -33.76 16 15 C -0.23 -12.40 10.70 84.03 0.90 -11.51 16 16 H 0.09 4.45 7.83 -2.91 -0.02 4.42 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 18 N -0.95 -57.24 11.51 21.65 0.25 -57.00 16 19 Si 0.97 44.90 29.56 68.60 2.03 46.93 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.13 4.57 8.41 86.48 0.73 5.29 16 24 C 0.04 1.03 5.55 86.39 0.48 1.51 16 25 C 0.13 2.38 6.60 86.36 0.57 2.95 16 26 N -0.72 -15.19 5.64 -459.91 -2.59 -17.79 16 27 C 0.69 17.54 8.61 179.47 1.55 19.08 16 28 O -0.63 -22.07 17.53 -3.99 -0.07 -22.14 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.91 7.91 -2.39 -0.02 0.89 16 31 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.10 0.72 7.72 -2.38 -0.02 0.70 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 0.57 5.52 -2.39 -0.01 0.56 16 36 H 0.02 0.59 6.38 -2.39 -0.02 0.57 16 37 H 0.10 2.06 5.81 -2.39 -0.01 2.05 16 38 H 0.10 3.33 8.11 -2.39 -0.02 3.31 16 39 H 0.02 1.04 5.76 -2.38 -0.01 1.03 16 40 H 0.02 1.08 7.37 -2.38 -0.02 1.06 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.89 5.93 -2.39 -0.01 1.88 16 44 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.10 2.04 8.08 -2.39 -0.02 2.02 16 46 H 0.08 1.78 7.06 -2.38 -0.02 1.77 16 47 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 48 H 0.43 9.23 8.96 -92.71 -0.83 8.40 16 Total: -1.00 -85.28 376.12 -3.29 -88.56 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.16 Total: 12.63 kcal Atomic # 6 Polarization: 33.07 SS G_CDS: 9.17 Total: 42.24 kcal Atomic # 7 Polarization: -136.44 SS G_CDS: -14.53 Total: -150.97 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.12 Total: -39.39 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -85.28 -3.29 -88.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941515634.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.203 kcal (2) G-P(sol) polarization free energy of solvation -85.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds